HHsearch alignment for GI: 254780870 and conserved domain: cd02426
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=99.89 E-value=5.9e-23 Score=164.55 Aligned_cols=108 Identities=15% Similarity=0.327 Sum_probs=97.7
Q ss_pred CCCCCHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEE---EECCCCCHHHHHHHHHHCCCCEEEEECCCHHHC
Q ss_conf 11136332032110242178879999999999999998698799---975897970867878748998899986240235
Q gi|254780870|r 337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF---WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD 413 (449)
Q Consensus 337 g~~wP~~iaP~~v~Iipi~~~~~~~~~~A~~i~~~Lr~~Gi~v~---~D~r~~~iGkK~~~Ad~~gip~~iiiG~~el~~ 413 (449)
T Consensus 18 vL~Lhp~LAP~Kvai~~~~~~~~eL~~~a~~l~~~L~~~gi~v~~~~~~d~~~sIGkrY~r~DeiGtP~citvD~~TLed 97 (128)
T cd02426 18 VLKLHPCLAPYKVAIDCGKGDTAELRDLCQGLKNELREAGLSVWPGYLETQHSSLEQLLDKYDEMGVLFTLLISEQTLEN 97 (128)
T ss_pred EEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 98448874771799970368818889999999999987399435463545434788988776642884799977874347
Q ss_pred CEEEEEECCCCCEEEEEHHHHHHHHHHHHHH
Q ss_conf 7189999899978786199999999999872
Q gi|254780870|r 414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN 444 (449)
Q Consensus 414 ~~Vtir~r~tg~q~~v~l~eli~~i~~~l~~ 444 (449)
T Consensus 98 gtVtlR~RDT~~QerI~I~dl~~yl~~~i~~ 128 (128)
T cd02426 98 GLLQLRSRDTTLKETIHISDLPDYLLRYIAA 128 (128)
T ss_pred CCEEEEECCCCHHEEEEHHHHHHHHHHHHCC
T ss_conf 9589885476021357699989999998639