HHsearch alignment for GI: 254780870 and conserved domain: cd02426

>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=99.89  E-value=5.9e-23  Score=164.55  Aligned_cols=108  Identities=15%  Similarity=0.327  Sum_probs=97.7

Q ss_pred             CCCCCHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEE---EECCCCCHHHHHHHHHHCCCCEEEEECCCHHHC
Q ss_conf             11136332032110242178879999999999999998698799---975897970867878748998899986240235
Q gi|254780870|r  337 GIIWPDSVAPFKISLINIKAHDQVCRDACEKIYARLSKVGCDVF---WDDMGEQIGSQFAVADLLGFPLQVIVGSKFVSD  413 (449)
Q Consensus       337 g~~wP~~iaP~~v~Iipi~~~~~~~~~~A~~i~~~Lr~~Gi~v~---~D~r~~~iGkK~~~Ad~~gip~~iiiG~~el~~  413 (449)
T Consensus        18 vL~Lhp~LAP~Kvai~~~~~~~~eL~~~a~~l~~~L~~~gi~v~~~~~~d~~~sIGkrY~r~DeiGtP~citvD~~TLed   97 (128)
T cd02426          18 VLKLHPCLAPYKVAIDCGKGDTAELRDLCQGLKNELREAGLSVWPGYLETQHSSLEQLLDKYDEMGVLFTLLISEQTLEN   97 (128)
T ss_pred             EEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf             98448874771799970368818889999999999987399435463545434788988776642884799977874347


Q ss_pred             CEEEEEECCCCCEEEEEHHHHHHHHHHHHHH
Q ss_conf             7189999899978786199999999999872
Q gi|254780870|r  414 SKVEIKHRLTGIREDMSLEEVINYASHRFSN  444 (449)
Q Consensus       414 ~~Vtir~r~tg~q~~v~l~eli~~i~~~l~~  444 (449)
T Consensus        98 gtVtlR~RDT~~QerI~I~dl~~yl~~~i~~  128 (128)
T cd02426          98 GLLQLRSRDTTLKETIHISDLPDYLLRYIAA  128 (128)
T ss_pred             CCEEEEECCCCHHEEEEHHHHHHHHHHHHCC
T ss_conf             9589885476021357699989999998639