HHsearch alignment for GI: 254780870 and conserved domain: pfam00587
>pfam00587 tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T). Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases.
Probab=100.00 E-value=5.5e-41 Score=278.52 Aligned_cols=161 Identities=35% Similarity=0.539 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCHHHHHHHCCHHHCCCCCCEECCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 99999999999998669889735751246898771973112222104021378620003455543101100001342013
Q gi|254780870|r 49 ALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKSYRNL 128 (449)
Q Consensus 49 i~~~le~~~r~~~~~~G~~ei~tP~l~~~eL~~~SGh~d~~~~em~~~~d~~~~~~~LrP~~~e~~~~i~~~~~~SYr~L 128 (449)
T Consensus 1 l~~~l~~~~~~~~~~~G~~~i~tP~l~~~~~~~~sg~~~~~~~~my~~~d~~~~~l~Lrp~~~~~~~~~~~~~~~~~~~l 80 (170)
T pfam00587 1 LRNALENFIRDLFKRYGYQEVDTPILEPKELWEGSGHWDDYFDEMYRFKDRGGEELYLRPTAEVGITRLFKNEILSYRDL 80 (170)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECCEEEEHHHHHHCCCCCCCHHHEEEEECCCCCEEEEECCCCHHHHHHHHHHCCCCCCC
T ss_conf 97999999999999859989999917567898344776557531256735899768873257458889988620032358
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHCCCCHHH
Q ss_conf 40264146533456676754345316687404221188688799999999987411110062012233110010131133
Q gi|254780870|r 129 PFTFYQIQLKFRDELRPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGPIGGDLSH 208 (449)
Q Consensus 129 Plr~y~ig~~fR~E~rp~~GL~R~ReF~q~D~~~F~~~~e~~~~e~~~~~~~~~~i~~~lgl~~~~v~~~~~~ig~~~s~ 208 (449)
T Consensus 81 P~r~~~~~~~fR~E~~~~~Gl~R~reF~q~d~~~~~~-~e~s~~~~~e~~~~~~~~~~~lgl~~~i~~~~~g~l~~~~~~ 159 (170)
T pfam00587 81 PLKLYQIGPCFRYEARPRRGLGRVREFTQVDAEIFGT-PEQSEEEDEELLKLAEEILQDLGLPYRVVLNTRGDLGGYASK 159 (170)
T ss_pred CCEEECCCCCCCCCCCCCCCCCEEEEEEEECEEEEEC-CCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHH
T ss_conf 6013306530067777666774367889804799967-004299999999999999998799679997267778986786
Q ss_pred HH
Q ss_conf 43
Q gi|254780870|r 209 EF 210 (449)
Q Consensus 209 e~ 210 (449)
T Consensus 160 ~~ 161 (170)
T pfam00587 160 TG 161 (170)
T ss_pred CC
T ss_conf 07