RPSBLAST alignment for GI: 254780871 and conserved domain: TIGR01184

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. Length = 230
 Score = 88.3 bits (219), Expect = 2e-18
 Identities = 59/200 (29%), Positives = 107/200 (53%), Gaps = 12/200 (6%)

Query: 26  LENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFL 85
           L+ V+L++++GE ++L+  SG GKST+L++   L  P  G VI+  +   +   D+    
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM--- 57

Query: 86  RCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM--DLLSYMDMSQYANRR 143
                  V+Q + LL   +V ENI         +   + +RA+  + ++ + +++ A++R
Sbjct: 58  ------VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKR 111

Query: 144 SSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIA 203
              +SGG +QRVAI RA++ +P ++L DEP G LD  T   +   L  +     +  L+ 
Sbjct: 112 PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV 171

Query: 204 THNHDLASQM-DRQITIRDG 222
           TH+ D A  + DR + + +G
Sbjct: 172 THDVDEALLLSDRVVMLTNG 191