RPSBLAST alignment for GI: 254780871 and conserved domain: TIGR02203
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. Length = 571
Score = 76.3 bits (188), Expect = 6e-15
Identities = 64/222 (28%), Positives = 111/222 (50%), Gaps = 17/222 (7%)
Query: 10 QNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVII 69
+NV Y G+ P L+++ L ++ GE VALV SG+GKST++++ PD G +++
Sbjct: 334 RNVTFRYP--GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILL 391
Query: 70 ANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQII----AGINHKTAYQ 125
+ L+D + LR ++ V Q +L + ++ NI + + A I A
Sbjct: 392 DG---HDLADYTLASLR-RQVALVSQ-DVVLFNDTIANNIAYGRTEQADRAEIERALAAA 446
Query: 126 RAMDLLSYMD--MSQYANRRSSDISGGEQQRVAICRAI-ANKPLIILADEPTGNLDLKTA 182
A D + + + +SGG++QR+AI RA+ + P++IL DE T LD ++
Sbjct: 447 YAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILIL-DEATSALDNESE 505
Query: 183 QQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
+ V + L+ L+ G L+ H + DR + + DG I
Sbjct: 506 RLVQAALERLM--QGRTTLVIAHRLSTIEKADRIVVMDDGRI 545