RPSBLAST alignment for GI: 254780871 and conserved domain: TIGR01189
>gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. Length = 198
Score = 77.8 bits (192), Expect = 2e-15
Identities = 57/200 (28%), Positives = 96/200 (48%), Gaps = 19/200 (9%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGNVIIANQLCNKLSDDKK 82
+ E + +L GE + + P+G GK+T+L I AGLL PD G V + D+
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR-PDSGEVRWNGTALAEQRDEPH 72
Query: 83 SFLRCSKIGFVYQEHR--LLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYA 140
+ +Y H L + S +EN+ F I H A + D L+ + ++ +
Sbjct: 73 RNI-------LYLGHLPGLKPELSALENLHFWAAI----HGGAQRTIEDALAAVGLTGFE 121
Query: 141 NRRSSDISGGEQQRVAICRA-IANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLA 199
+ ++ +S G+Q+R+A+ R ++ PL IL DEPT LD + +L+ + R G
Sbjct: 122 DLPAAQLSAGQQRRLALARLWLSRAPLWIL-DEPTTALDKAGVALLAGLLRAHLARGG-I 179
Query: 200 ALIATHNHDLASQMDRQITI 219
L+ TH DL R++ +
Sbjct: 180 VLLTTH-QDLGLVEARELRL 198