RPSBLAST alignment for GI: 254780871 and conserved domain: TIGR01842

>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544

 Score = 75.5 bits (186), Expect = 1e-14
 Identities = 64/228 (28%), Positives = 111/228 (48%), Gaps = 17/228 (7%)

Query: 6   VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65
            L ++NV  +    G   P L  +   L+ GE +A++ PSG+GKST+  +   +  P  G
Sbjct: 316 HLSVENV--TIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG 373

Query: 66  NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENII-F------PQIIAGI 118
           +V +      +   D+++F +   IG++ Q+  L    +V ENI  F       +II   
Sbjct: 374 SVRLDGADLKQW--DRETFGK--HIGYLPQDVEL-FPGTVAENIARFGENADPEKIIEAA 428

Query: 119 NHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLD 178
             K A    + L              + +SGG++QR+A+ RA+   P +++ DEP  NLD
Sbjct: 429 --KLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLD 486

Query: 179 LKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
            +  Q + + +K L  R G+  ++ TH   L   +D+ + ++DG IA 
Sbjct: 487 EEGEQALANAIKALKAR-GITVVVITHRPSLLGCVDKILVLQDGRIAR 533