RPSBLAST alignment for GI: 254780871 and conserved domain: TIGR03375
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694
Score = 85.7 bits (213), Expect = 9e-18
Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 47/226 (20%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVII----ANQLCNKLS 78
P L+NV L+++ GE VA++ G+GKST+L + GL + P +G+V++ Q+
Sbjct: 479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ-PTEGSVLLDGVDIRQI----- 532
Query: 79 DDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF--PQI----------IAGIN-----HK 121
+ LR IG+V Q+ RL ++ +NI P +AG+ H
Sbjct: 533 --DPADLR-RNIGYVPQDPRLFYG-TLRDNIALGAPYADDEEILRAAELAGVTEFVRRHP 588
Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
DM Q R S +SGG++Q VA+ RA+ P I+L DEPT +D ++
Sbjct: 589 DGL----------DM-QIGERGRS-LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636
Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG-MIAD 226
++ LK + +G ++ TH L +DR I + +G ++AD
Sbjct: 637 EERFKDRLKRWL--AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVAD 680