RPSBLAST alignment for GI: 254780871 and conserved domain: TIGR03375

>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694
 Score = 85.7 bits (213), Expect = 9e-18
 Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 47/226 (20%)

Query: 24  PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVII----ANQLCNKLS 78
           P L+NV L+++ GE VA++   G+GKST+L  + GL + P +G+V++      Q+     
Sbjct: 479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ-PTEGSVLLDGVDIRQI----- 532

Query: 79  DDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF--PQI----------IAGIN-----HK 121
               + LR   IG+V Q+ RL    ++ +NI    P            +AG+      H 
Sbjct: 533 --DPADLR-RNIGYVPQDPRLFYG-TLRDNIALGAPYADDEEILRAAELAGVTEFVRRHP 588

Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
                        DM Q   R  S +SGG++Q VA+ RA+   P I+L DEPT  +D ++
Sbjct: 589 DGL----------DM-QIGERGRS-LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636

Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG-MIAD 226
            ++    LK  +  +G   ++ TH   L   +DR I + +G ++AD
Sbjct: 637 EERFKDRLKRWL--AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVAD 680