RPSBLAST alignment for GI: 254780871 and conserved domain: cd03224
>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.. Length = 222
Score = 105 bits (264), Expect = 9e-24
Identities = 58/223 (26%), Positives = 112/223 (50%), Gaps = 16/223 (7%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65
L ++N+ Y + +L V L++ +GEIVAL+ +G GK+T+L I GLL P G
Sbjct: 1 LEVENLNAGYGK----SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-PRSG 55
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
++ + L +++ IG+V + R+ + +V EN+ + A + +
Sbjct: 56 SIRFDGRDITGLPPHERARA---GIGYVPEGRRIFPELTVEENL---LLGAYARRRAKRK 109
Query: 126 RAMDLLSYM--DMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183
++ + + + + + + +SGGEQQ +AI RA+ ++P ++L DEP+ L K +
Sbjct: 110 ARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE 169
Query: 184 QVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225
++F ++ L G+ L+ N A ++ DR + G +
Sbjct: 170 EIFEAIREL-RDEGVTILLVEQNARFALEIADRAYVLERGRVV 211