RPSBLAST alignment for GI: 254780871 and conserved domain: cd03245
>gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.. Length = 220
Score = 89.1 bits (221), Expect = 9e-19
Identities = 68/231 (29%), Positives = 116/231 (50%), Gaps = 29/231 (12%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNV 67
+NV SY + P L+NV L+++ GE VA++ G+GKST+L +AGL + P G+V
Sbjct: 5 FRNVSFSYP--NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK-PTSGSV 61
Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRA 127
++ +L + LR IG+V Q+ L ++ +NI +A +R
Sbjct: 62 LLDGTDIRQLD---PADLR-RNIGYVPQDVTLFYG-TLRDNITLGAPLA------DDERI 110
Query: 128 MDLLSYMDMSQYANR-----------RSSDISGGEQQRVAICRAIANKPLIILADEPTGN 176
+ ++ + N+ R +SGG++Q VA+ RA+ N P I+L DEPT
Sbjct: 111 LRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSA 170
Query: 177 LDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG-MIAD 226
+D+ + +++ L+ L+ +I TH L +DR I + G ++AD
Sbjct: 171 MDMNSEERLKERLRQLL--GDKTLIIITHRPSLLDLVDRIIVMDSGRIVAD 219