RPSBLAST alignment for GI: 254780871 and conserved domain: cd03263

>gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.. Length = 220

 Score =  114 bits (286), Expect = 3e-26
 Identities = 54/213 (25%), Positives = 105/213 (49%), Gaps = 9/213 (4%)

Query: 7   LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
           L ++N+  +Y+      P ++++ L++ KGEI  L+  +G GK+T L +      P  G 
Sbjct: 1   LQIRNLTKTYK--KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGT 58

Query: 67  VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
             I     N  S           +G+  Q   L  + +V E++ F   + G+      + 
Sbjct: 59  AYI-----NGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEE 113

Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
              LL  + ++  AN+R+  +SGG ++++++  A+   P ++L DEPT  LD  + + ++
Sbjct: 114 VELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW 173

Query: 187 SILKYLVVRSGLAALIATHNHDLASQMDRQITI 219
            ++  L VR G + ++ TH+ D A  +  +I I
Sbjct: 174 DLI--LEVRKGRSIILTTHSMDEAEALCDRIAI 204