RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system
ATP-binding protein lolD [Candidatus Liberibacter asiaticus str.
psy62]
(227 letters)
>gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796
ATP-binding cassette, macrolide-specific ABC-type efflux
carrier (MacAB), and proteins involved in cell division
(FtsE), and release of liporoteins from the cytoplasmic
membrane (LolCDE). They are clustered together
phylogenetically. MacAB is an exporter that confers
resistance to macrolides, while the LolCDE system is not
a transporter at all. An FtsE null mutants showed
filamentous growth and appeared viable on high salt
medium only, indicating a role for FtsE in cell division
and/or salt transport. The LolCDE complex catalyses the
release of lipoproteins from the cytoplasmic membrane
prior to their targeting to the outer membrane..
Length = 218
Score = 240 bits (615), Expect = 2e-64
Identities = 94/218 (43%), Positives = 138/218 (63%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
+ L+N+ +Y G+ L+ V LS++KGE VA+V PSG+GKST+L+I G L+ P G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
V + +KLS+ + + R IGFV+Q LL D + +EN+ P ++AG+ K +R
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
A +LL + + N S++SGG+QQRVAI RA+AN P IILADEPTGNLD +T ++V
Sbjct: 121 AEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVM 180
Query: 187 SILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
+L+ L +G ++ TH+ +LA DR I +RDG I
Sbjct: 181 ELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
>gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 229 bits (586), Expect = 5e-61
Identities = 94/222 (42%), Positives = 142/222 (63%), Gaps = 1/222 (0%)
Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65
++ L+NV Y G+ L++V+L ++ GE VA+V PSG+GKST+L++ G L+ P G
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
V+I + KLS+ + + LR KIGFV+Q LL D +V+EN+ P +IAG + +
Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR 120
Query: 126 RAMDLLSYMDMS-QYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQ 184
A +LL + + + ++ S++SGG+QQRVAI RA+ N P IILADEPTGNLD KTA++
Sbjct: 121 AAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKE 180
Query: 185 VFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
V +L+ L G ++ TH+ +LA DR I ++DG I +
Sbjct: 181 VLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
>gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 183 bits (466), Expect = 3e-47
Identities = 78/216 (36%), Positives = 121/216 (56%), Gaps = 7/216 (3%)
Query: 16 YRQVGKPFP----VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIAN 71
+ V K +P L +V + KGE V L PSG GKST+L + E P +G +++
Sbjct: 4 FENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNG 63
Query: 72 QLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLL 131
++L + FLR +IG V+Q+ RLL D +V EN+ P + G + +R ++L
Sbjct: 64 HDLSRLKGREIPFLR-RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVL 122
Query: 132 SYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKY 191
+ + A S +SGGEQQRVAI RAI N+P ++LADEPTGNLD + ++ + +
Sbjct: 123 DLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE 182
Query: 192 LVVRSGLAALIATHNHDLASQMD-RQITIRDGMIAD 226
+ R G L+ATH+ +L ++M R + + DG +
Sbjct: 183 I-NRLGTTVLMATHDLELVNRMRHRVLALEDGRLVR 217
>gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 175 bits (446), Expect = 6e-45
Identities = 76/224 (33%), Positives = 127/224 (56%)
Query: 1 MDSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE 60
M + ++ + ++ + Q +L+ V L +K+GE VA+V PSG+GKST+L + L+
Sbjct: 1 MPAENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD 60
Query: 61 VPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINH 120
P G V + Q +KL +D ++ LR +GFV+Q L+ + + +EN+ P + G +
Sbjct: 61 DPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESS 120
Query: 121 KTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
+ A LL + + + + +SGGEQQRVA+ RA A +P ++ ADEPTGNLD
Sbjct: 121 ADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180
Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
T ++ +L L G ++ TH+ LA++ DRQ+ +R G +
Sbjct: 181 TGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRL 224
>gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate
transport system. Phosphonates are a class of
organophosphorus compounds characterized by a chemically
stable carbon-to-phosphorus (C-P) bond. Phosphonates
are widespread among naturally occurring compounds in
all kingdoms of wildlife, but only procaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 241
Score = 161 bits (410), Expect = 1e-40
Identities = 81/229 (35%), Positives = 130/229 (56%), Gaps = 15/229 (6%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQG 65
+ ++N+ +Y L++V LS+ GE VAL+ PSG GKST+L + GL+E P G
Sbjct: 1 IEVENLSKTY---PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE-PTSG 56
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFP--------QIIAG 117
+V+I NKL LR +IG ++Q+ L+ SV+EN++ + + G
Sbjct: 57 SVLIDGTDINKLKGKALRQLR-RQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFG 115
Query: 118 INHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNL 177
+ K QRA+ L + + A +R+ +SGG+QQRVAI RA+ +P +ILADEP +L
Sbjct: 116 LFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASL 175
Query: 178 DLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQ-MDRQITIRDGMIA 225
D +++QV +LK + G+ +++ H DLA + DR + ++DG I
Sbjct: 176 DPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224
>gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring..
Length = 214
Score = 161 bits (408), Expect = 2e-40
Identities = 78/214 (36%), Positives = 119/214 (55%), Gaps = 7/214 (3%)
Query: 16 YRQVGKPFP----VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIAN 71
+ V K +P L+ +++S+ GE V LV PSG GKST+L + E+P G + +
Sbjct: 3 FINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNG 62
Query: 72 QLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLL 131
Q + L +LR KIG V+Q+ RLL D +V EN+ F + G+ + +R L
Sbjct: 63 QDVSDLRGRAIPYLR-RKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAAL 121
Query: 132 SYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKY 191
+ +S +++SGGEQQRVAI RAI N P I++ADEPTGNLD T ++ ++LK
Sbjct: 122 ELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKK 181
Query: 192 LVVRSGLAALIATHNHDLASQMD-RQITIRDGMI 224
+ ++G ++ATH +L R I + G +
Sbjct: 182 -INKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
>gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the
ATP-binding subunits of the bacterial ABC-type nitrate
and sulfonate transport systems, respectively. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 220
Score = 158 bits (402), Expect = 1e-39
Identities = 73/210 (34%), Positives = 112/210 (53%), Gaps = 10/210 (4%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
L ++NV +Y G LE++ LS+++GE VALV PSG GKST+L I LE P G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
V++ + D G+V+Q+ LL +V++N+ + G+ A +R
Sbjct: 61 VLVDGEPVTGPGPD---------RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARER 111
Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
A +LL + +S + N +SGG +QRVA+ RA+A P ++L DEP LD T +Q+
Sbjct: 112 AEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQ 171
Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DR 215
L + +G L+ TH+ D A + DR
Sbjct: 172 EELLDIWRETGKTVLLVTHDIDEAVFLADR 201
>gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 155 bits (393), Expect = 1e-38
Identities = 71/220 (32%), Positives = 122/220 (55%), Gaps = 10/220 (4%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
++N+ S+ VL+ + LS++KGE+V ++ PSG+GKST+L LE PD G++
Sbjct: 5 IKNLSKSFGD----KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIA-GINHKTAYQRA 127
+ + + D K K+G V+Q+ L +V+EN+ + ++ A ++A
Sbjct: 61 VDGE---DVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKA 117
Query: 128 MDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS 187
++LL + ++ A+ + +SGG+QQRVAI RA+A P ++L DEPT LD + +V
Sbjct: 118 LELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD 177
Query: 188 ILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIAD 226
++K L G+ +I TH A ++ DR I + G I +
Sbjct: 178 VMKDL-AEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIE 216
>gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 154 bits (391), Expect = 2e-38
Identities = 75/225 (33%), Positives = 127/225 (56%), Gaps = 18/225 (8%)
Query: 15 SYRQVGKPFP----VLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNVII 69
+ + K +P L++V+L + +GE+VA++ PSG GKST+L + GL++ P G ++
Sbjct: 5 EVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD-PTSGEILF 63
Query: 70 AN-QLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFP--------QIIAGINH 120
Q+ + + R IG ++Q+ L+ SV+EN++ + + G+
Sbjct: 64 NGVQITKLKGKELRKLRR--DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121
Query: 121 KTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
K +A+D L + + A +R+S +SGG+QQRVAI RA+ +P IILADEP +LD +
Sbjct: 122 KEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPE 181
Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
+A++V ILK + G+ ++ H DLA + DR I ++ G I
Sbjct: 182 SAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRI 226
>gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC)
is an ABC-type transporter encoded by metN of the metNPQ
operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate
binding protein. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 233
Score = 152 bits (386), Expect = 6e-38
Identities = 70/220 (31%), Positives = 117/220 (53%), Gaps = 2/220 (0%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
L+NV + G L++V LS+ KGEI ++ SG GKST++ LE P G+V+
Sbjct: 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL 63
Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128
+ LS + R +IG ++Q LL +V EN+ P IAG+ +R +
Sbjct: 64 VDGTDLTLLSGKELRKAR-RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVL 122
Query: 129 DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSI 188
+LL + + A+ + +SGG++QRV I RA+AN P ++L DE T LD +T Q + ++
Sbjct: 123 ELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILAL 182
Query: 189 LKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIADL 227
L+ + GL ++ TH ++ ++ DR + G + +
Sbjct: 183 LRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE 222
>gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 152 bits (385), Expect = 9e-38
Identities = 81/218 (37%), Positives = 123/218 (56%), Gaps = 3/218 (1%)
Query: 9 LQNVKHSYRQVG-KPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNV 67
L+NV ++ Q G L++V L + KGEI ++ SG GKST+L + LLE P G+V
Sbjct: 4 LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63
Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRA 127
+ Q LS+ + LR KIG ++Q LL +V EN+ FP +AG+ QR
Sbjct: 64 FVDGQDLTALSEAELRQLR-QKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRV 122
Query: 128 MDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS 187
+LL + +S A+R + +SGG++QRVAI RA+AN P I+L DE T LD +T Q +
Sbjct: 123 AELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE 182
Query: 188 ILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
+LK + GL ++ TH ++ ++ DR + G +
Sbjct: 183 LLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRL 220
>gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding
components of the bacterial periplasmic histidine and
glutamine permeases, repectively. Histidine permease is
a multisubunit complex containing the HisQ and HisM
integral membrane subunits and two copies of HisP. HisP
has properties intermediate between those of integral
and peripheral membrane proteins and is accessible from
both sides of the membrane, presumably by its
interaction with HisQ and HisM. The two HisP subunits
form a homodimer within the complex. The domain
structure of the amino acid uptake systems is typical
for prokaryote extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein..
Length = 213
Score = 151 bits (384), Expect = 1e-37
Identities = 83/219 (37%), Positives = 129/219 (58%), Gaps = 11/219 (5%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
++N+ S+ F VL+ + L++KKGE+V ++ PSG+GKST+L LLE PD G +I
Sbjct: 3 IKNLHKSF----GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 69 IANQLCNKLSDDKKSFLRC-SKIGFVYQEHRLLMDFSVIENIIFPQIIA-GINHKTAYQR 126
I KL+DDKK+ K+G V+Q+ L +V+ENI I G++ A +R
Sbjct: 59 IDGL---KLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER 115
Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
A++LL + ++ A+ + +SGG+QQRVAI RA+A P ++L DEPT LD + +V
Sbjct: 116 ALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVL 175
Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
++K L G+ ++ TH A ++ DR I + DG I
Sbjct: 176 DVMKDL-AEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
>gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 151 bits (382), Expect = 2e-37
Identities = 68/223 (30%), Positives = 114/223 (51%), Gaps = 12/223 (5%)
Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65
L ++NV S+ F ++++ L +KKGE V L+ PSG GK+T+L + E P G
Sbjct: 5 ALEIRNVSKSFGD----FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFP-QIIAGINHKTAY 124
+++ + + +K+ IG V+Q + L +V EN+ F ++ +
Sbjct: 61 EILLDGEDITDVPPEKR------PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIK 114
Query: 125 QRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQ 184
R + L + + +A+R+ +SGG+QQRVA+ RA+ +P ++L DEP LD K +Q
Sbjct: 115 ARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQ 174
Query: 185 VFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIAD 226
+ LK L G+ + TH+ + A M DR + DG I
Sbjct: 175 MRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQ 217
>gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute
Transporters-like subgroup. This family is comprised of
proteins involved in the transport of apparently
unrelated solutes and proteins specific for di- and
oligosaccharides and polyols. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 213
Score = 151 bits (382), Expect = 2e-37
Identities = 72/221 (32%), Positives = 119/221 (53%), Gaps = 13/221 (5%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65
L L+ + +Y V L+++ L+++ GE +AL+ PSG GK+T+L IAGL E PD G
Sbjct: 1 LELKGLSKTYGSV----RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL-ERPDSG 55
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
++I + + +++ IG V+Q++ L +V ENI F + G+
Sbjct: 56 EILIDGRDVTGVPPERR------NIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRA 109
Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
R +LL + + NR ++SGG+QQRVA+ RA+A +P ++L DEP LD K +++
Sbjct: 110 RVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL 169
Query: 186 FSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225
LK L G+ + TH+ + A + DR + +G I
Sbjct: 170 REELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210
>gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 149 bits (378), Expect = 6e-37
Identities = 70/216 (32%), Positives = 118/216 (54%), Gaps = 13/216 (6%)
Query: 4 AEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD 63
+L ++ V S+ V VLE+++LS++KGE VA++ PSG GKST+L + LE P
Sbjct: 1 MALLEIEGVSKSFGGV----EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT 56
Query: 64 QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTA 123
G V++ + D IG+V+QE LL +V++N+ + G + A
Sbjct: 57 SGEVLLDGRPVTGPGPD---------IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEA 107
Query: 124 YQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183
+RA +LL + ++ + ++ +SGG +QRVAI RA+A +P ++L DEP G LD T +
Sbjct: 108 RERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTRE 167
Query: 184 QVFSILKYLVVRSGLAALIATHNHDLASQMDRQITI 219
++ L L + L+ TH+ D A + ++ +
Sbjct: 168 ELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVV 203
>gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. This ABC transport system of the CbiMNQO family
is involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most of
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 211
Score = 146 bits (370), Expect = 6e-36
Identities = 71/218 (32%), Positives = 113/218 (51%), Gaps = 13/218 (5%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNV 67
L+N+ SY +P L+++ L++KKGE V +V P+G+GKST+L + GLL P G V
Sbjct: 2 LKNLSFSYPDGARP--ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG-PTSGEV 58
Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQ--EHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
++ + KLS + K+G V+Q + + +V E + F G+ + +
Sbjct: 59 LVDGKDLTKLSLKELR----RKVGLVFQNPDDQFFGP-TVEEEVAFGLENLGLPEEEIEE 113
Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
R + L + + +R +SGG++QRVAI +A P I+L DEPT LD +++
Sbjct: 114 RVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173
Query: 186 FSILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDG 222
+LK L G +I TH+ L DR I + DG
Sbjct: 174 LELLKKL-KAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
>gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 145 bits (367), Expect = 1e-35
Identities = 68/222 (30%), Positives = 124/222 (55%), Gaps = 11/222 (4%)
Query: 5 EVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPD 63
EV+ ++N+ Y G L+ V ++ GEI L+ P+G GK+T+L +AGLL+ P
Sbjct: 3 EVIEVRNLTKKY---GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-PT 58
Query: 64 QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTA 123
G +++ + + R +IG+V QE L + +V EN+ F + G++ + A
Sbjct: 59 SGEILVLGY---DVVKEPAKVRR--RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEA 113
Query: 124 YQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183
+R +LL + AN++ +SGG +QR++I A+ + P +++ DEPT LD ++ +
Sbjct: 114 EERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRR 173
Query: 184 QVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
+++ +L+ L G+ L++TH + A ++ DR I + DG I
Sbjct: 174 EIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKI 215
>gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 144 bits (364), Expect = 2e-35
Identities = 73/217 (33%), Positives = 113/217 (52%), Gaps = 12/217 (5%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65
L L+NV+ S+ F VL++V+L ++ GE V L+ PSG GKST+L IAGL E P G
Sbjct: 4 LELKNVRKSF----GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE-PTSG 58
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
++I + L +K+ I V+Q + L +V ENI F + G+ +
Sbjct: 59 EILIDGRDVTDLPPEKR------GIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDK 112
Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
R ++ + + NR+ +SGG++QRVA+ RA+ KP + L DEP NLD K +
Sbjct: 113 RVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLM 172
Query: 186 FSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG 222
S +K L R G + TH+ A + +I + +
Sbjct: 173 RSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMND 209
>gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily
specific for the transport of dipeptides, oligopeptides
(OppD), and nickel (NikDE). The NikABCDE system of E.
coli belongs to this family and is composed of the
periplasmic binding protein NikA, two integral membrane
components (NikB and NikC), and two ATPase (NikD and
NikE). The NikABCDE transporter is synthesized under
anaerobic conditions to meet the increased demand for
nickel resulting from hydrogenase synthesis. The
molecular mechanism of nickel uptake in many bacteria
and most archaea is not known. Many other members of
this ABC family are also involved in the uptake of
dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF..
Length = 228
Score = 143 bits (362), Expect = 4e-35
Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 7/225 (3%)
Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65
+L ++N+ S+ G L++V S+KKGE + LV SG+GKST+ L P G
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMD--FSVIENIIFPQIIAGINHKTA 123
++I + KLS + R +I V+Q+ ++ ++ E I P I G K
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRR-KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKE 119
Query: 124 YQRAMDLLSYMDM---SQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
++ LL + + + NR ++SGG++QRVAI RA+A P +++ADEPT LD+
Sbjct: 120 ARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVS 179
Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
Q+ +LK L GL L TH+ + +++ DR + G I
Sbjct: 180 VQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
>gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 140 bits (355), Expect = 3e-34
Identities = 68/232 (29%), Positives = 117/232 (50%), Gaps = 10/232 (4%)
Query: 3 SAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLE- 60
+ +L ++N+ + G P + +V ++ GEI+ +V SG+GKST+ + GLL
Sbjct: 2 MSPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPE 61
Query: 61 --VPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEH-RLLMDFSVIENIIF--PQII 115
G VI+ + LS+ + LR +I ++Q+ L I + I ++
Sbjct: 62 GGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLH 121
Query: 116 AGINHKTAYQRAMDLLSYMDMSQYANRRS--SDISGGEQQRVAICRAIANKPLIILADEP 173
+ A +RA++LL + + R +SGG +QRV I A+A KP +++ADEP
Sbjct: 122 GKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEP 181
Query: 174 TGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
T LD+ T Q+ +LK L G+A L TH+ + +++ DR + + G I
Sbjct: 182 TTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233
Score = 134 bits (340), Expect = 1e-32
Identities = 61/215 (28%), Positives = 106/215 (49%), Gaps = 3/215 (1%)
Query: 13 KHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQ 72
K + + +++V L++GE + LV SG+GKST+ I L P G++I Q
Sbjct: 294 KGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQ 353
Query: 73 LCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFP-QIIAGINHKTAYQRAMDLL 131
+ + + R ++ F L +V + + P +I G + R +LL
Sbjct: 354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELL 413
Query: 132 SYMDMS-QYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILK 190
+ + ++ +R ++SGG++QRVAI RA+A +P +++ DEP LD+ QV ++LK
Sbjct: 414 ELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLK 473
Query: 191 YLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
L GL L +H+ + + DR + DG I
Sbjct: 474 DLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRI 508
>gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase
component of the spermidine/putrescine-preferential
uptake system consisting of PotA, -B, -C, and -D. PotA
has two domains with the N-terminal domain containing
the ATPase activity and the residues required for
homodimerization with PotA and heterdimerization with
PotB. ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 232
Score = 139 bits (351), Expect = 7e-34
Identities = 73/217 (33%), Positives = 110/217 (50%), Gaps = 11/217 (5%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
L+NV Y F L+ V L +K+GE L+ PSG GK+T+L + E P G ++
Sbjct: 3 LENVSKFYGG----FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128
+ + L K+ + V+Q + L +V ENI F + + +R
Sbjct: 59 LDGKDITNLPPHKR------PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVA 112
Query: 129 DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSI 188
+ L + + YANR+ S +SGG+QQRVAI RA+ N+P ++L DEP G LDLK + +
Sbjct: 113 EALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLE 172
Query: 189 LKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
LK L G+ + TH+ + A M DR + G I
Sbjct: 173 LKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKI 209
>gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding
Protein Dependent) systems that are largely represented
in archaea and eubacteria and are primarily involved in
scavenging solutes from the environment. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 178
Score = 136 bits (345), Expect = 4e-33
Identities = 76/217 (35%), Positives = 114/217 (52%), Gaps = 41/217 (18%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
L L+NV Y Q VL +V L+++ GEIVAL+ PSG+GKST+L LE PD G+
Sbjct: 1 LELKNVSKRYGQK----TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGS 56
Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
++I + L D+ R +IG V+Q+ L +V+ENI
Sbjct: 57 ILIDGEDLTDLEDELPPLRR--RIGMVFQDFALFPHLTVLENIALG-------------- 100
Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
+SGG+QQRVA+ RA+A P ++L DEPT LD T ++V
Sbjct: 101 --------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140
Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDG 222
++LK L + G+ ++ TH+ D A+++ DR + +RDG
Sbjct: 141 ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
>gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 133 bits (337), Expect = 3e-32
Identities = 74/220 (33%), Positives = 120/220 (54%), Gaps = 10/220 (4%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
+ NVK + F L+++ L +K GE+VAL+ PSG GKST+L I LE PD G +
Sbjct: 5 INNVKKRFGA----FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60
Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGI--NHKTAYQR 126
+ ++ L D +R K+GFV+Q + L +V +NI F + + R
Sbjct: 61 LNGRV---LFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR 117
Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
+LL + + A+R + +SGG++QRVA+ RA+A +P ++L DEP G LD K +++
Sbjct: 118 VEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELR 177
Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225
L+ L R G+ + TH+ + A ++ DR + + G I
Sbjct: 178 RWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIE 217
>gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 133 bits (337), Expect = 3e-32
Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 15/225 (6%)
Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQ 64
+L ++N+ Y P+L+++ S+ KGEI ++ P+G+GKST+L +AGLL+ P
Sbjct: 2 MLEVENLSFGYGGK----PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK-PKS 56
Query: 65 GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENII---FP-QIIAGINH 120
G V++ + LS K + K+ +V Q +V E ++ +P + G
Sbjct: 57 GEVLLDGKDIASLS--PKELAK--KLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPS 112
Query: 121 KTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
K + + L + + A+R ++SGGE+QRV I RA+A + I+L DEPT +LD+
Sbjct: 113 KEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIA 172
Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
+V +L+ L GL ++ H+ +LA++ D I ++DG I
Sbjct: 173 HQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKI 217
>gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 133 bits (336), Expect = 4e-32
Identities = 70/193 (36%), Positives = 107/193 (55%), Gaps = 6/193 (3%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQ---LCNKLSDDK 81
L ++ L +GE + L+ PSG GKS++L + LLE+P G + IA SD
Sbjct: 17 ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76
Query: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENII-FPQIIAGINHKTAYQRAMDLLSYMDMSQYA 140
LR +G V+Q++ L +V EN+I P + G++ A RA LL + + YA
Sbjct: 77 IRDLR-RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYA 135
Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200
+R +SGG+QQRVAI RA+ +P ++L DEPT LD + Q+ SI+K L +G+
Sbjct: 136 DRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKEL-AETGITQ 194
Query: 201 LIATHNHDLASQM 213
+I TH ++A +
Sbjct: 195 VIVTHEVEVARKT 207
>gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 131 bits (331), Expect = 1e-31
Identities = 65/222 (29%), Positives = 113/222 (50%), Gaps = 10/222 (4%)
Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65
++ +N+ Y L++V L ++KGE V L+ P+G+GKST+L + L P G
Sbjct: 3 MIEAENLSFRY---PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSG 59
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQ--EHRLLMDFSVIENIIFPQIIAGINHKTA 123
V++ + L + K+G V+Q + +L +V + + F G+ +
Sbjct: 60 EVLV-DGLDTSSEKSLLELRQ--KVGLVFQNPDDQLFGP-TVEDEVAFGLENLGLPREEI 115
Query: 124 YQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183
+R + L + + + +R ++SGG++QRVAI +A P I+L DEPT LD K +
Sbjct: 116 EERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175
Query: 184 QVFSILKYLVVRSGLAALIATHNHDLASQ-MDRQITIRDGMI 224
++ +LK L G +I TH+ +L + DR + + DG I
Sbjct: 176 ELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKI 217
>gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 129 bits (326), Expect = 7e-31
Identities = 63/230 (27%), Positives = 115/230 (50%), Gaps = 13/230 (5%)
Query: 1 MDSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLE 60
M + +L L+ + S+ V L+ V L+++ GE+ AL+ +G GKST++ I +
Sbjct: 3 MSTPPLLELRGISKSFGGV----KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY 58
Query: 61 VPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAG--- 117
PD G ++I + S + I V+QE L+ + SV ENI +
Sbjct: 59 PPDSGEILIDGKPVAFSSPRDA---LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFG 115
Query: 118 -INHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGN 176
I+ K +RA +LL+ + + + D+S ++Q V I RA++ +++ DEPT
Sbjct: 116 LIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAA 175
Query: 177 LDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225
L +K +++F +++ L G+A + +H D ++ DR +RDG +
Sbjct: 176 LTVKETERLFDLIRRL-KAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224
Score = 76.7 bits (189), Expect = 5e-15
Identities = 42/213 (19%), Positives = 89/213 (41%), Gaps = 18/213 (8%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
+ +V +++ GEI+ + G G++ + G +++ + +S
Sbjct: 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGK-----PVRIRSP 328
Query: 85 LRCSKIGFVY-----QEHRLLMDFSVIENIIFPQIIA-----GINHKTAYQRAMDLLSYM 134
K G Y + L++D S+ ENI + I+ + A + +
Sbjct: 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRL 388
Query: 135 DMSQY-ANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193
+ + +SGG QQ+V + R +A P +++ DEPT +D+ +++ +++ L
Sbjct: 389 RIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL- 447
Query: 194 VRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225
G A L+ + + DR + +R+G I
Sbjct: 448 AAEGKAILMISSELPELLGLSDRILVMREGRIV 480
>gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The
complex is composed of two ATP-binding proteins (cysA),
two transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 239
Score = 128 bits (323), Expect = 1e-30
Identities = 62/207 (29%), Positives = 108/207 (52%), Gaps = 11/207 (5%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKK 82
F L++V L + GE+VAL+ PSG+GK+T+L + LE PD G ++ + D
Sbjct: 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGE------DATD 68
Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIF----PQIIAGINHKTAYQRAMDLLSYMDMSQ 138
++ +GFV+Q + L +V +N+ F + +LL + +
Sbjct: 69 VPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW 128
Query: 139 YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGL 198
A+R + +SGG++QRVA+ RA+A +P ++L DEP G LD K +++ L+ L +
Sbjct: 129 LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHV 188
Query: 199 AALIATHNHDLASQM-DRQITIRDGMI 224
+ TH+ + A ++ DR + + G I
Sbjct: 189 TTVFVTHDQEEALEVADRVVVMNKGRI 215
>gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 126 bits (319), Expect = 4e-30
Identities = 67/232 (28%), Positives = 118/232 (50%), Gaps = 13/232 (5%)
Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQ 64
+L ++N+ S+ ++ V LKKGEI+ +V SG+GKS + I GLL P+
Sbjct: 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60
Query: 65 ----GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMD-FSVIENIIFPQIIA--- 116
G ++ + LS+ + +R +I ++Q+ ++ I + I +
Sbjct: 61 RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGK 120
Query: 117 GINHKTAYQRAMDLLSYMDMSQYANRRSS---DISGGEQQRVAICRAIANKPLIILADEP 173
G++ K A +RA++LL + + R S ++SGG +QRV I A+A P +++ADEP
Sbjct: 121 GLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEP 180
Query: 174 TGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
T LD+ Q+ +LK L G A ++ TH+ + +++ DR + G I
Sbjct: 181 TTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRI 232
>gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed..
Length = 213
Score = 124 bits (313), Expect = 2e-29
Identities = 69/220 (31%), Positives = 106/220 (48%), Gaps = 13/220 (5%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65
+ L+NV + L++++L + GE V L+ PSG GK+T L IAGL E P G
Sbjct: 1 VELENVTKRF----GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL-EEPTSG 55
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
+ I + L + I V+Q + L +V +NI F + + +
Sbjct: 56 RIYIGGRDVTDLPPKDRD------IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE 109
Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
R ++ + + +R+ +SGG++QRVA+ RAI +P + L DEP NLD K Q+
Sbjct: 110 RVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQM 169
Query: 186 FSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
+ LK L R G + TH+ A M DR + DG I
Sbjct: 170 RAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
>gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette)
transport system involved in resistant to organic
solvents; ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 124 bits (312), Expect = 2e-29
Identities = 68/209 (32%), Positives = 115/209 (55%), Gaps = 15/209 (7%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNVIIANQLCNKLSDDKK 82
VL+ V L +++GEI+A++ PSG+GKST+L I GLL PD G V+I + + LS+ +
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-PDSGEVLIDGEDISGLSEAEL 72
Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAY------QRAMDLLSYMDM 136
LR ++G ++Q L +V EN+ FP + T + ++ L + +
Sbjct: 73 YRLRR-RMGMLFQSGALFDSLTVFENVAFP-----LREHTRLSEEEIREIVLEKLEAVGL 126
Query: 137 SQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRS 196
+ +++SGG ++RVA+ RA+A P ++L DEPT LD + + +++ L
Sbjct: 127 RGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKEL 186
Query: 197 GLAALIATHNHDLASQM-DRQITIRDGMI 224
GL +++ TH+ D A + DR + DG I
Sbjct: 187 GLTSIMVTHDLDTAFAIADRIAVLYDGKI 215
>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 124 bits (312), Expect = 3e-29
Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 9/225 (4%)
Query: 4 AEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD 63
+L ++N+ Y F L NV L +++GE + +V SG+GKST+ + LE P
Sbjct: 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS 60
Query: 64 QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQE-HRLLMDFSVIENIIF-PQIIAGINHK 121
G++++ + L+ K++ + V+Q+ + L + I+ P G+
Sbjct: 61 SGSILLDGK---PLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGL--S 115
Query: 122 TAYQRAMDLLSYMDMSQ-YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
+ QR +LL + + + +RR ++SGG++QR+AI RA+ +P +++ DEPT LD+
Sbjct: 116 KSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVS 175
Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
Q+ ++L L GL L +H+ L M DR + +G I
Sbjct: 176 VQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQI 220
>gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 122 bits (308), Expect = 6e-29
Identities = 74/219 (33%), Positives = 118/219 (53%), Gaps = 11/219 (5%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
+NV Y +++V+L++++GE + L+ PSG+GK+T L + L P G ++
Sbjct: 4 FENVSKRY----GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128
I + +SD LR KIG+V Q+ L +V ENI + G + + +RA
Sbjct: 60 IDGE---DISDLDPVELR-RKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRAD 115
Query: 129 DLLSYMDM--SQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
+LL + + S+YA+R ++SGG+QQRV + RA+A P I+L DEP G LD T +Q+
Sbjct: 116 ELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQ 175
Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
+K L G + TH+ D A ++ DR + G I
Sbjct: 176 EEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEI 214
>gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium..
Length = 232
Score = 122 bits (308), Expect = 7e-29
Identities = 72/219 (32%), Positives = 113/219 (51%), Gaps = 9/219 (4%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
L +N+ Y V+ V LS+K+GEIV L+ P+G GK+T ++ L PD G
Sbjct: 1 LRAENLSKRY----GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGK 56
Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
+++ Q KL K++ L IG++ QE + +V ENI+ I G++ K ++
Sbjct: 57 ILLDGQDITKLPMHKRARL---GIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEK 113
Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
+LL ++ ++S +SGGE++RV I RA+A P +L DEP +D Q +
Sbjct: 114 LEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ 173
Query: 187 SILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDGMI 224
I+K L R G+ LI HN + S DR I +G +
Sbjct: 174 KIIKILKDR-GIGVLITDHNVRETLSITDRAYIIYEGKV 211
>gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 121 bits (305), Expect = 1e-28
Identities = 64/207 (30%), Positives = 112/207 (54%), Gaps = 12/207 (5%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
+L+ V L + +GEI+A++ SG+GKST+L + L PD+G ++I + +LS+++
Sbjct: 23 ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82
Query: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQ------ 138
+R ++G ++Q+ L +V EN+ FP H + + L M +
Sbjct: 83 IR-KRMGVLFQQGALFSSLTVFENVAFPL----REHTKLPESLIRELVLMKLELVGLRGA 137
Query: 139 YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGL 198
A+ S++SGG ++RVA+ RAIA P ++ DEPT LD +A + +++ L GL
Sbjct: 138 AADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL 197
Query: 199 AALIATHNHD-LASQMDRQITIRDGMI 224
++ TH+ D L + DR + DG +
Sbjct: 198 TVIMVTHDLDSLLTIADRVAVLADGKV 224
>gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 120 bits (302), Expect = 4e-28
Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 11/218 (5%)
Query: 5 EVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQ 64
+L + ++ SY GKP LE+V L++ GE+V ++ PSG GK+T+L++ P +
Sbjct: 2 CMLNVSHLSLSYE--GKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR 59
Query: 65 GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAY 124
G++ + + ++ G V+Q LL +VI+N+ F + GI
Sbjct: 60 GSIQLNGRRIEGPGAER---------GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRR 110
Query: 125 QRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQ 184
+ A +L+ + + ++ +SGG +QRV I RA+A +P ++L DEP G LD T +Q
Sbjct: 111 EIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQ 170
Query: 185 VFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG 222
+ +L L +G L+ TH+ + A + ++ +
Sbjct: 171 MQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSP 208
>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system
belong to the larger ATP-Binding Cassette (ABC)
transporter superfamily. The characteristic feature of
these transporters is the obligatory coupling of ATP
hydrolysis to substrate translocation. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 269
Score = 119 bits (301), Expect = 5e-28
Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 3/206 (1%)
Query: 21 KPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNVIIANQLCNKLSD 79
+ +V L +++GEI ++ SG+GKST+L I L+E P G V+I Q +S
Sbjct: 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE-PTSGKVLIDGQDIAAMSR 93
Query: 80 DKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQY 139
+ LR KI V+Q LL +V+EN+ F + G+ +RA + L + + +
Sbjct: 94 KELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGW 153
Query: 140 ANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLA 199
++ ++SGG QQRV + RA+A P I+L DE LD +++ L L
Sbjct: 154 EHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKT 213
Query: 200 ALIATHNHDLASQM-DRQITIRDGMI 224
+ TH+ D A ++ DR ++DG +
Sbjct: 214 IVFITHDLDEALRLGDRIAIMKDGRL 239
>gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 119 bits (300), Expect = 7e-28
Identities = 68/229 (29%), Positives = 119/229 (51%), Gaps = 21/229 (9%)
Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQ 64
++ ++N+ SY PVLE++ LS++KGEI AL+ P+G GKST+L I GLL+ P
Sbjct: 4 MIEVENLTVSYGNR----PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK-PSS 58
Query: 65 GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDF--SVIENIIFPQIIA----GI 118
G + I + K + IG+V Q+ + F +V + ++ +
Sbjct: 59 GEIKIFGKPVRKRRKRLR-------IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRR 111
Query: 119 NHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLD 178
+K ++ + L + M +R+ ++SGG++QRV + RA+A P ++L DEP +D
Sbjct: 112 LNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVD 171
Query: 179 LKTAQQVFSILKYLVVRSGLAALIATHNHDLASQ-MDRQITIRDGMIAD 226
+ ++++ +LK L + G L+ TH+ L DR I + +IA
Sbjct: 172 VAGQKEIYDLLKEL-RQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIAS 219
>gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of
fundamental importance in the cell physiology of
bacteria because phosphate is required as a nutrient.
The Pst system of E. coli comprises four distinct
subunits encoded by the pstS, pstA, pstB, and pstC
genes. The PstS protein is a phosphate-binding protein
located in the periplasmic space. P stA and PstC are
hydrophobic and they form the transmembrane portion of
the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD)..
Length = 227
Score = 118 bits (297), Expect = 2e-27
Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 17/206 (8%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLL-----EVPD 63
L+++ Y L+++ L + KGEI AL+ PSG GKST+L + L PD
Sbjct: 3 LRDLNVYY----GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 64 QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGI-NHKT 122
+G V++ + L D R ++G V+Q S+ +N+ + + GI +
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRR--RVGMVFQ-KPNPFPGSIYDNVAYGLRLHGIKLKEE 115
Query: 123 AYQRAMDLLSYMDMSQYANRRSS--DISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
+R + L + R +SGG+QQR+ + RA+AN+P ++L DEPT LD
Sbjct: 116 LDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPI 175
Query: 181 TAQQVFSILKYLVVRSGLAALIATHN 206
+ ++ ++ L + +I THN
Sbjct: 176 STAKIEELIAEL--KKEYTIVIVTHN 199
>gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters,
involved in the uptake of siderophores, heme, and
vitamin B12, are widely conserved in bacteria and
archaea. Only very few species lack representatives of
the siderophore family transporters. The E. coli BtuCD
protein is an ABC transporter mediating vitamin B12
uptake. The two ATP-binding cassettes (BtuD) are in
close contact with each other, as are the two
membrane-spanning subunits (BtuC); this arrangement is
distinct from that observed for the E. coli lipid
flippase MsbA. The BtuC subunits provide 20
transmembrane helices grouped around a translocation
pathway that is closed to the cytoplasm by a gate
region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters..
Length = 180
Score = 117 bits (294), Expect = 3e-27
Identities = 64/218 (29%), Positives = 110/218 (50%), Gaps = 45/218 (20%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNV 67
++N+ Y VL+++ LS++ GEIV ++ P+G GKST+L +AGLL+ P G +
Sbjct: 2 VENLSVGYGGR----TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEI 56
Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRA 127
++ + LS + KI +V PQ
Sbjct: 57 LLDGKDLASLSPKE----LARKIAYV------------------PQA------------- 81
Query: 128 MDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS 187
L + ++ A+R +++SGGE+QRV + RA+A +P I+L DEPT +LD+ ++
Sbjct: 82 ---LELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE 138
Query: 188 ILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
+L+ L G ++ H+ +LA++ DR I ++DG I
Sbjct: 139 LLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRI 176
>gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 116 bits (293), Expect = 4e-27
Identities = 61/203 (30%), Positives = 107/203 (52%), Gaps = 11/203 (5%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSD----- 79
VL+ V L G++++++ SG+GKST L LE P G++ + + D
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 80 ---DKKSFLRC-SKIGFVYQEHRLLMDFSVIENII-FPQIIAGINHKTAYQRAMDLLSYM 134
DK+ R +++G V+Q L +V+EN+I P + G++ A +RA L+ +
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKV 140
Query: 135 DMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVV 194
+++ A+ + +SGG+QQRVAI RA+A +P ++L DEPT LD + +V +++ L
Sbjct: 141 GIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDL-A 199
Query: 195 RSGLAALIATHNHDLASQMDRQI 217
G ++ TH A + +
Sbjct: 200 EEGRTMVVVTHEMGFARDVSSHV 222
>gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of
a bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilus, NatAB is inducible by
agents such as ethanol and protonophores, which lower
the protonmotive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunomycin- and doxorubicin-efflux system.
Hence, the functional NatAB is presumably assembled
with two copies of a single ATP-binding protein and a
single intergral membrane protein..
Length = 218
Score = 116 bits (291), Expect = 7e-27
Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 7/222 (3%)
Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65
++ + +R V K ++ V ++K GE+ L+ P+G GK+T L + L PD G
Sbjct: 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
+ K + + ++GFV L + EN+ + + G+
Sbjct: 61 FATVDGFDVVKEPAEARR-----RLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA 115
Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
R +L + M + +RR S G +Q+VAI RA+ + P ++L DEPT LD+ + +
Sbjct: 116 RLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRAL 175
Query: 186 FSILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDGMIAD 226
++ L G L +TH ++ DR + + G +
Sbjct: 176 REFIRQL-RALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216
>gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC.
ModC is an ABC-type transporter and the ATPase component
of a molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 115 bits (290), Expect = 1e-26
Identities = 59/202 (29%), Positives = 109/202 (53%), Gaps = 9/202 (4%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
L+NV L +++G+ ++ P+G+GKS +L IAG ++ PD G +++ + L +K+
Sbjct: 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK-PDSGKILLNGKDITNLPPEKR- 71
Query: 84 FLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRR 143
I +V Q + L +V +NI + ++ K ++ +++ + + NR+
Sbjct: 72 -----DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRK 126
Query: 144 SSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIA 203
+SGGEQQRVAI RA+ P I+L DEP LD++T +++ LK + G+ L
Sbjct: 127 PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHV 186
Query: 204 THNHDLASQM-DRQITIRDGMI 224
TH+ + A + D+ + +G +
Sbjct: 187 THDFEEAWALADKVAIMLNGKL 208
>gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type
transporters. This family includes transporters
involved in the uptake of various metallic cations such
as iron, manganese, and zinc. The ATPases of this group
of transporters are very similar to members of
iron-siderophore uptake family suggesting that they
share a common ancestor. The best characterized
metal-type ABC transporters are the YfeABCD system of Y.
pestis, the SitABCD system of Salmonella enterica
serovar Typhimurium, and the SitABCD transporter of
Shigella flexneri. Moreover other uncharacterized
homologs of these metal-type transporters are mainly
found in pathogens like Haemophilus or enteroinvasive E.
coli isolates..
Length = 213
Score = 114 bits (287), Expect = 2e-26
Identities = 63/205 (30%), Positives = 107/205 (52%), Gaps = 22/205 (10%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNV 67
++++ SY PVLE+V +K GE +A+V P+G GKST+L I GLL+ P G++
Sbjct: 2 VEDLTVSYGGH----PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK-PTSGSI 56
Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDF--SVIENI---IFPQIIA-GINHK 121
+ K +IG+V Q + DF SV + + ++ K
Sbjct: 57 RV---------FGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSK 107
Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
+ + L + +S+ A+R+ ++SGG+QQRV + RA+ P ++L DEP +D KT
Sbjct: 108 ADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKT 167
Query: 182 AQQVFSILKYLVVRSGLAALIATHN 206
+ ++ +L+ L R G+ L+ TH+
Sbjct: 168 QEDIYELLREL-RREGMTILVVTHD 191
>gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding
component of a bacterial solute transporter that serves
a protective role to cells growing in a hyperosmolar
environment. ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 242
Score = 114 bits (286), Expect = 2e-26
Identities = 67/216 (31%), Positives = 109/216 (50%), Gaps = 9/216 (4%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
+NV Y G + N++L + KGE + L+ PSG+GK+T + + L P G +
Sbjct: 3 FENVTKRY---GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128
I + + + LR KIG+V Q+ L +V ENI + + +RA
Sbjct: 60 IDGEDIREQDPVE---LR-RKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERAD 115
Query: 129 DLLSYMDM--SQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
+LL+ + + +++A+R ++SGG+QQRV + RA+A P ++L DEP G LD T Q+
Sbjct: 116 ELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQ 175
Query: 187 SILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG 222
K L G + TH+ D A ++ +I I
Sbjct: 176 EEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKN 211
>gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport
of a variety of lipid compounds. Mutations of members
of ABCA subfamily are associated with human genetic
diseases, such as, familial high-density lipoprotein
(HDL) deficiency, neonatal surfactant deficiency,
degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR)
protein transports vitamin A derivatives in the outer
segments of photoreceptor cells, and therefore, performs
a crucial step in the visual cycle. The ABCA genes are
not present in yeast. However, evolutionary studies of
ABCA genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages..
Length = 220
Score = 114 bits (286), Expect = 3e-26
Identities = 54/213 (25%), Positives = 105/213 (49%), Gaps = 9/213 (4%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
L ++N+ +Y+ P ++++ L++ KGEI L+ +G GK+T L + P G
Sbjct: 1 LQIRNLTKTYK--KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGT 58
Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
I N S +G+ Q L + +V E++ F + G+ +
Sbjct: 59 AYI-----NGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEE 113
Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
LL + ++ AN+R+ +SGG ++++++ A+ P ++L DEPT LD + + ++
Sbjct: 114 VELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW 173
Query: 187 SILKYLVVRSGLAALIATHNHDLASQMDRQITI 219
++ L VR G + ++ TH+ D A + +I I
Sbjct: 174 DLI--LEVRKGRSIILTTHSMDEAEALCDRIAI 204
>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like
transporters are involved in drug, peptide, and lipid
export. They belong to the subfamily C of the
ATP-binding cassette (ABC) superfamily of transport
proteins. The ABCC subfamily contains transporters with
a diverse functional spectrum that includes ion
transport, cell surface receptor, and toxin secretion
activities. The MRP-like family, simlar to all ABC
proteins, have a common four-domain core structure
constituted by two membrane-spanning domains, each
composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 171
Score = 112 bits (283), Expect = 6e-26
Identities = 63/215 (29%), Positives = 94/215 (43%), Gaps = 48/215 (22%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNV 67
+NV SY G+P PVL++V L++K GE VA+V PSG+GKST+L + L + P G +
Sbjct: 3 FKNVSFSYP--GRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEI 59
Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRA 127
+I L + I +V Q+ L ++ ENI
Sbjct: 60 LIDGVDLRDLDLES----LRKNIAYVPQDP-FLFSGTIRENI------------------ 96
Query: 128 MDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS 187
+SGG++QR+AI RA+ P I++ DE T LD +T +
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 188 ILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG 222
L+ L G ++ H DR I + DG
Sbjct: 138 ALRAL--AKGKTVIVIAHRLSTIRDADRIIVLDDG 170
>gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 111 bits (280), Expect = 1e-25
Identities = 64/201 (31%), Positives = 110/201 (54%), Gaps = 3/201 (1%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
+ + L +++GEI ++ SG+GKST++ + L+E P +G +++ + KLS +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE-PTRGEILVDGKDIAKLSAAELRE 102
Query: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRS 144
LR KI V+Q LL +V+EN+ F + G+ +RA++ L + + YA++
Sbjct: 103 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP 162
Query: 145 SDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIAT 204
+++SGG QQRV + RA+AN P I+L DE LD ++ L L + + T
Sbjct: 163 NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFIT 222
Query: 205 HNHDLASQMDRQITI-RDGMI 224
H+ D A ++ +I I +DG I
Sbjct: 223 HDLDEALRIGDRIAIMKDGEI 243
>gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 111 bits (279), Expect = 1e-25
Identities = 69/238 (28%), Positives = 124/238 (52%), Gaps = 12/238 (5%)
Query: 1 MDSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKS-TILHIAGLL 59
M + +L ++N+ ++ Q G ++ + ++ GE +ALV SG+GKS T L I GLL
Sbjct: 1 MMTMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL 60
Query: 60 EVPD----QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMD-FSVIENIIFPQI 114
P G+++ + S+ + +R +KIG ++QE ++ I + +
Sbjct: 61 PSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVL 120
Query: 115 IA--GINHKTAYQRAMDLLSYMDMSQYANRRSS---DISGGEQQRVAICRAIANKPLIIL 169
G++ A RA++LL + + + R + ++SGG++QRV I A+AN+P +++
Sbjct: 121 RLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLI 180
Query: 170 ADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIAD 226
ADEPT LD+ Q+ +LK L G+A L TH+ + + DR ++ G I +
Sbjct: 181 ADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238
Score = 88.7 bits (220), Expect = 1e-18
Identities = 64/218 (29%), Positives = 110/218 (50%), Gaps = 14/218 (6%)
Query: 16 YRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTI-LHIAGLLEVPDQGNVIIANQLC 74
R+ ++ + L+L++G+ + LV SG+GKST+ L + L+ P QG + Q
Sbjct: 293 LRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI--PSQGEIRFDGQDI 350
Query: 75 NKLSDDKKSFLRCSKIGFVYQEH------RLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128
+ LS + LR ++ V+Q+ R+ + + E + + ++ QR +
Sbjct: 351 DGLSRKEMRPLR-RRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHE--PKLSAAERDQRVI 407
Query: 129 DLLSYMDMSQYA-NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS 187
+ L + + NR + SGG++QR+AI RA+ KP +IL DEPT LD QV
Sbjct: 408 EALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLD 467
Query: 188 ILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
+L+ L + GL+ L +H+ + + R I +RDG I
Sbjct: 468 LLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKI 505
>gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 111 bits (279), Expect = 1e-25
Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 11/223 (4%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
+LL+ + Y +L N+ LS++ GE +A+ PSG GKST+L I L P G
Sbjct: 2 MLLELKQVGYLAGDAK--ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGT 59
Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
++ + +S K R ++ + Q L D +V +N+IFP I N +
Sbjct: 60 LLFEGE---DVSTLKPEAYRQ-QVSYCAQTPALFGD-TVEDNLIFPWQIR--NRRPDRAA 112
Query: 127 AMDLLSYMDMSQYA-NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
A+DLL+ + + +++SGGE+QR+A+ R + P I+L DE T LD + +
Sbjct: 113 ALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172
Query: 186 FSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIADL 227
++ V +A L TH+ D A + D+ IT++ G ++
Sbjct: 173 EEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGEM 215
>gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 111 bits (278), Expect = 2e-25
Identities = 62/214 (28%), Positives = 109/214 (50%), Gaps = 7/214 (3%)
Query: 12 VKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIAN 71
V + G + +V ++GEI L+ +G GK+T+L + L +PD G V I
Sbjct: 4 VTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDG 63
Query: 72 QLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLL 131
+ + D SF+R KIG ++ E L + EN+ + + G++ K R +L
Sbjct: 64 --VDTVRD--PSFVR-RKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118
Query: 132 SYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKY 191
+ + +Y +RR + S G +Q+VAI RA+ + P I++ DEPT LD++T ++ +K
Sbjct: 119 KRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQ 178
Query: 192 LVVRSGLAALIATHN-HDLASQMDRQITIRDGMI 224
L G A + ++H ++ + DR I + G +
Sbjct: 179 L-KNEGRAVIFSSHIMQEVEALCDRVIVLHKGEV 211
>gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 109 bits (275), Expect = 5e-25
Identities = 60/227 (26%), Positives = 112/227 (49%), Gaps = 20/227 (8%)
Query: 17 RQVGKPF---PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQL 73
R + K F + +V L ++ GEIV L+ P+G GK+T+ ++ P G VI +
Sbjct: 8 RGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRD 67
Query: 74 CNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGI------------NHK 121
L + + L I +Q RL +V+EN+ +
Sbjct: 68 ITGLPPHRIARL---GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEER 124
Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
A +RA +LL ++ + + A+R + ++S G+Q+R+ I RA+A +P ++L DEP L+ +
Sbjct: 125 EARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEE 184
Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDG-MIAD 226
+++ +++ L R G+ L+ H+ L + DR + + G +IA+
Sbjct: 185 TEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE 231
>gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type
transporter and the ATPase component of a molybdate
transport system that also includes the periplasmic
binding protein ModA and the membrane protein ModB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 214
Score = 109 bits (274), Expect = 6e-25
Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 7/194 (3%)
Query: 35 KGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFL--RCSKIGF 92
E+ + SG GKST+L LE PD G +++ + KK L + KIG
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLF--DSRKKINLPPQQRKIGL 79
Query: 93 VYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQ 152
V+Q++ L +V EN+ F + ++ +LL + + NR + +SGGE+
Sbjct: 80 VFQQYALFPHLNVRENLAF--GLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEK 137
Query: 153 QRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQ 212
QRVA+ RA+A +P ++L DEP LD Q+ LK + + + TH+ A
Sbjct: 138 QRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEY 197
Query: 213 M-DRQITIRDGMIA 225
+ DR + + DG +
Sbjct: 198 LADRIVVMEDGRLQ 211
>gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins
belongs to a multisubunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea,
these transporters usually include an ATP-binding
protein and one or two integral membrane proteins.
Eukaryote systems of the ABCA subfamily display ABC
domains that are quite similar to this family. The
ATP-binding domain shows the highest similarity between
all members of the ABC transporter family. ABC
transporters are a subset of nucleotide hydrolases that
contain a signature motif, Q-loop, and H-loop/switch
region, in addition to, the Walker A motif/P-loop and
Walker B motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins..
Length = 173
Score = 109 bits (275), Expect = 6e-25
Identities = 54/220 (24%), Positives = 107/220 (48%), Gaps = 49/220 (22%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQG 65
+ ++N+ Y L+++ L+++KGEI L+ P+G GK+T++ I GLL+ PD G
Sbjct: 1 IEVRNLSKRY----GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK-PDSG 55
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
+ + + K ++ K +IG++ +E L + +V EN+
Sbjct: 56 EIKVLGKDIKKEPEEVKR-----RIGYLPEEPSLYENLTVRENLKL-------------- 96
Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
SGG +QR+A+ +A+ + P +++ DEPT LD ++ ++
Sbjct: 97 ----------------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREF 134
Query: 186 FSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
+ +L+ L + G L+++H + A ++ DR + +G I
Sbjct: 135 WELLREL-KKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
>gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 109 bits (273), Expect = 8e-25
Identities = 68/222 (30%), Positives = 112/222 (50%), Gaps = 11/222 (4%)
Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65
L+ +N+ SY++ V+ +V L + GEIV L+ P+G GK+T ++ L PD G
Sbjct: 4 TLVAENLAKSYKKR----KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG 59
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
+++ ++ KL K++ L IG++ QE + +V +NI+ I + K A +
Sbjct: 60 KILLDDEDITKLPMHKRARL---GIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAER 116
Query: 126 --RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183
LL ++ + ++ +SGGE++RV I RA+A P IL DEP +D
Sbjct: 117 KEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVI 176
Query: 184 QVFSILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDGMI 224
+ I+K+L R G+ LI HN + DR I DG +
Sbjct: 177 DIQRIIKHLKDR-GIGVLITDHNVRETLDICDRAYIISDGKV 217
>gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 108 bits (272), Expect = 1e-24
Identities = 65/226 (28%), Positives = 115/226 (50%), Gaps = 14/226 (6%)
Query: 4 AEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVP 62
A +L ++N+ Y L V L +++GEIVAL+ +G GK+T+L I GL+ P
Sbjct: 1 APMLEVENLSAGY----GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR-P 55
Query: 63 DQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKT 122
G +I + L +++ L I +V + R+ +V EN++ K
Sbjct: 56 RSGRIIFDGEDITGLPPHERARLG---IAYVPEGRRIFPRLTVEENLLLG--AYARRDKE 110
Query: 123 AYQRAMDLLSYM--DMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
A +R ++ + + + + N+R+ +SGGEQQ +AI RA+ ++P ++L DEP+ L K
Sbjct: 111 AQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPK 170
Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225
+++F +K L G+ L+ N A ++ DR + +G I
Sbjct: 171 IVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV 216
>gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins..
Length = 220
Score = 106 bits (266), Expect = 5e-24
Identities = 54/204 (26%), Positives = 100/204 (49%), Gaps = 6/204 (2%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKK 82
F + V +++GEI L+ P+G GK+T + + L P G +A + + +
Sbjct: 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVR 72
Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142
+IG V+Q+ + + + EN+ + G+ +R +LL ++ + + A+R
Sbjct: 73 R-----RIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADR 127
Query: 143 RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALI 202
SGG ++R+ I R++ ++P ++ DEPT LD +T V+ ++ L G+ L+
Sbjct: 128 LVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILL 187
Query: 203 ATHNHDLASQM-DRQITIRDGMIA 225
TH + A Q+ DR I G I
Sbjct: 188 TTHYMEEAEQLCDRVAIIDHGRII 211
>gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 106 bits (266), Expect = 6e-24
Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 18/224 (8%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
+NV Y P VLE++ L + GE VA+V SG+GKST+L + L P QG ++
Sbjct: 474 FENVSFRYGPDDPP--VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531
Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-------PQIIAGINHK 121
+ L+D + LR ++G+V Q+ L S+ ENI +II
Sbjct: 532 LDGV---DLNDIDLASLR-RQVGYVLQDP-FLFSGSIRENIALGNPEATDEEIIEAAQLA 586
Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
A++ +L M +++SGG++QR+A+ RA+ +KP I+L DE T LD +T
Sbjct: 587 GAHEFIENL--PMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPET 644
Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIA 225
+ L + G +I H DR I + G I
Sbjct: 645 EAIILQNLLQI--LQGRTVIIIAHRLSTIRSADRIIVLDQGKIV 686
>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the
LIV-I bacterial ABC-type two-component transport system
that imports neutral, branched-chain amino acids. The
E. coli branched-chain amino acid transporter comprises
a heterodimer of ABC transporters (LivF and LivG), a
heterodimer of six-helix TM domains (LivM and LivH), and
one of two alternative soluble periplasmic substrate
binding proteins (LivK or LivJ). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules..
Length = 222
Score = 105 bits (264), Expect = 9e-24
Identities = 58/223 (26%), Positives = 112/223 (50%), Gaps = 16/223 (7%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65
L ++N+ Y + +L V L++ +GEIVAL+ +G GK+T+L I GLL P G
Sbjct: 1 LEVENLNAGYGK----SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-PRSG 55
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
++ + L +++ IG+V + R+ + +V EN+ + A + +
Sbjct: 56 SIRFDGRDITGLPPHERARA---GIGYVPEGRRIFPELTVEENL---LLGAYARRRAKRK 109
Query: 126 RAMDLLSYM--DMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183
++ + + + + + + +SGGEQQ +AI RA+ ++P ++L DEP+ L K +
Sbjct: 110 ARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE 169
Query: 184 QVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225
++F ++ L G+ L+ N A ++ DR + G +
Sbjct: 170 EIFEAIREL-RDEGVTILLVEQNARFALEIADRAYVLERGRVV 211
>gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. The CbiMNQO family ABC transport system is
involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 205
Score = 103 bits (258), Expect = 5e-23
Identities = 56/218 (25%), Positives = 116/218 (53%), Gaps = 17/218 (7%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
++N+ SY++ + +L+++ L L GEI+AL +G GK+T+ I L G+++
Sbjct: 2 IENISFSYKKGTE---ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58
Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTA-YQRA 127
+ K+ R IG+V Q+ +D+ + + + +++ G+ A ++A
Sbjct: 59 LNG-------KPIKAKERRKSIGYVMQD----VDYQLFTDSVREELLLGLKELDAGNEQA 107
Query: 128 MDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS 187
+L +D+ R +SGG++QR+AI A+ + +++ DEPT LD K ++V
Sbjct: 108 ETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE 167
Query: 188 ILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
+++ L G A ++ TH+++ +++ DR + + +G I
Sbjct: 168 LIREL-AAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
>gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter
subfamily is involved in the transport of the
hydrophobic amino acids leucine, isoleucine and valine.
MJ1267 is a branched-chain amino acid transporter with
29% similarity to both the LivF and LivG components of
the E. coli branched-chain amino acid transporter.
MJ1267 contains an insertion from residues 114 to 123
characteristic of LivG (Leucine-Isoleucine-Valine)
homologs. The branched-chain amino acid transporter
from E. coli comprises a heterodimer of ABCs (LivF and
LivG), a heterodimer of six-helix TM domains (LivM and
LivH), and one of two alternative soluble periplasmic
substrate binding proteins (LivK or LivJ)..
Length = 236
Score = 102 bits (257), Expect = 7e-23
Identities = 59/217 (27%), Positives = 113/217 (52%), Gaps = 19/217 (8%)
Query: 17 RQVGKPF---PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQ 72
R + K F L++V S++ GEI L+ P+G GK+T+ + I+G L P G+V+ +
Sbjct: 4 RGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR-PTSGSVLFDGE 62
Query: 73 LCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENII----------FPQIIAGINHKT 122
L + + L IG +Q RL + +V+EN++ A +
Sbjct: 63 DITGLPPHEIARL---GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREERE 119
Query: 123 AYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTA 182
A +RA +LL + ++ A+R + ++S G+Q+R+ I RA+A P ++L DEP L+ +
Sbjct: 120 ARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEET 179
Query: 183 QQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITI 219
+++ +++ L G+ L+ H+ D+ + ++T+
Sbjct: 180 EELAELIREL-RERGITVLLVEHDMDVVMSLADRVTV 215
>gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 101 bits (253), Expect = 2e-22
Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 11/213 (5%)
Query: 17 RQVGKPFP---VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQL 73
R + K FP ++V LS+KKGEI AL+ +G GKST++ I L PD G + + +
Sbjct: 8 RGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGK- 66
Query: 74 CNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF---PQIIAGINHKTAYQRAMDL 130
++ IG V+Q L+ +V ENII P I+ + A R +L
Sbjct: 67 --EVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKEL 124
Query: 131 LSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILK 190
+ + + +D+S GEQQRV I +A+ +++ DEPT L + A ++F IL+
Sbjct: 125 SERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILR 184
Query: 191 YLVVRSGLAALIATHN-HDLASQMDRQITIRDG 222
L G + TH ++ + DR +R G
Sbjct: 185 RL-AAEGKTIIFITHKLKEVMAIADRVTVLRRG 216
Score = 76.7 bits (189), Expect = 5e-15
Identities = 50/228 (21%), Positives = 101/228 (44%), Gaps = 17/228 (7%)
Query: 12 VKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIAN 71
V+ + + +++V ++ GEIV + +G G+S ++ L P G +++
Sbjct: 260 VEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNG 319
Query: 72 QLCNKLSDDKKSFLRCSKIGFVYQE---HRLLMDFSVIENIIFPQIIAG-------INHK 121
+ L R + +V ++ H L++D S+ EN++ + ++ +
Sbjct: 320 --KDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRR 377
Query: 122 TAYQRAMDLLSYMDM---SQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLD 178
+ A +L+ D+ S A RS +SGG QQ++ + R +A +P +++A +PT LD
Sbjct: 378 AIRKFARELIEEFDVRAPSPDAPARS--LSGGNQQKLILARELARRPDLLIAAQPTRGLD 435
Query: 179 LKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
+ + + L L LI+ ++ DR I +G I
Sbjct: 436 VGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483
>gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC
superfamily [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 1228
Score = 101 bits (253), Expect = 2e-22
Identities = 66/225 (29%), Positives = 103/225 (45%), Gaps = 21/225 (9%)
Query: 9 LQNVKHSYRQVGKP-FPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGN 66
+NV SY +P +L+ V L + G+ VALV PSG+GKST++ +A + P G
Sbjct: 353 FRNVCFSY--PSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD-PTSGE 409
Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-------PQIIAGIN 119
V+I + + +LR S+IG V QE +L ++ ENI + +I
Sbjct: 410 VLIDG---EDIRNLNLKWLR-SQIGLVSQE-PVLFATTIRENIRYGKPDATREEIEEAAK 464
Query: 120 HKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDL 179
A+ + L D R +SGG++QR+AI RA+ P I+L DE T LD
Sbjct: 465 AANAHDFILKLPDGYDT--LVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDA 522
Query: 180 KTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
++ + V L G ++ H D+ + +G I
Sbjct: 523 ESERVVQEALDKA--SKGRTTIVVAHRLSTIRNADKIAVMEEGKI 565
Score = 94.9 bits (236), Expect = 2e-20
Identities = 70/229 (30%), Positives = 106/229 (46%), Gaps = 21/229 (9%)
Query: 7 LLLQNVKHSYRQVGKP-FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEV---P 62
+ +NV +Y +P PVL N+ LS++ G+ VALV PSG+GKST++ LLE P
Sbjct: 988 IEFRNVSFAYPT--RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVI---SLLERFYDP 1042
Query: 63 DQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQI---IAGIN 119
D G V I L+ +LR +IG V QE L + ++ ENI + I
Sbjct: 1043 DAGKVKIDGVDIKDLN---LKWLR-KQIGLVSQEPVLF-NGTIRENIAYGSEEVSEEEII 1097
Query: 120 HKTAYQRAMDLLSYMD--MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNL 177
A + +S + R +SGG++QR+AI RAI P I+L DE T L
Sbjct: 1098 EAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSAL 1157
Query: 178 DLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
D ++ + V L G ++ H D +++G + +
Sbjct: 1158 DSESERVVQEALDR--AMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVE 1204
>gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 100 bits (251), Expect = 3e-22
Identities = 59/207 (28%), Positives = 104/207 (50%), Gaps = 13/207 (6%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82
P L +++L++K G++ ALV SG GKST+L+ + G L P QG + + LS +
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA-PTQGEIRVNGIDLRDLSPEAW 393
Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYAN- 141
+I +V Q + L ++ ENI+ + A A LL ++ +
Sbjct: 394 R----KQISWVSQ-NPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDT 448
Query: 142 ---RRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGL 198
+ +SGG+ QR+A+ RA+ + ++L DEPT +LD +T Q + L+ L + +
Sbjct: 449 VIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTV 508
Query: 199 AALIATHNHDLASQMDRQITIRDGMIA 225
L+ TH + A+ DR + + +G +
Sbjct: 509 --LVITHRLEDAADADRIVVLDNGRLV 533
>gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea,
the typical organization consists of one ABC and one or
two IMs. Eukaryote systems of the ABCA subfamily
display ABC domains strongly similar to this family.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region in addition to the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 210
Score = 99.5 bits (248), Expect = 7e-22
Identities = 56/217 (25%), Positives = 115/217 (52%), Gaps = 14/217 (6%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
L ++NV + +V L+++ S++KGEI L+ P+G GK+T + + + +PD G
Sbjct: 1 LEVENVTKRFGRV----TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE 56
Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
V+ + ++IG++ +E L VI+ +++ + G+ + A +R
Sbjct: 57 VLFDGK--------PLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR 108
Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
+ L +++S+YAN+R ++S G QQ+V A+ + P +++ DEP LD + +
Sbjct: 109 IDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLK 168
Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDG 222
+++ L R+G +++TH +L ++ DR + + G
Sbjct: 169 DVIREL-ARAGKTVILSTHQMELVEELCDRVLLLNKG 204
>gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 98.4 bits (245), Expect = 1e-21
Identities = 67/223 (30%), Positives = 113/223 (50%), Gaps = 12/223 (5%)
Query: 7 LLLQNVKHSY---RQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD 63
L + NV ++ +Q G PVL NV LS+ GE V L PSG+GKST+L +PD
Sbjct: 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD 64
Query: 64 QGNVIIANQ-----LCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGI 118
+G +++ ++ L + +R + IG+V Q R++ S ++ + P + G+
Sbjct: 65 EGQILVRHEGEWVDLVT-AEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGV 123
Query: 119 NHKTAYQRAMDLLSYMDMSQYANRRS-SDISGGEQQRVAICRAIANKPLIILADEPTGNL 177
+ A +A DLL+ +++ + + + SGGEQQRV I R I+L DEPT +L
Sbjct: 124 PREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL 183
Query: 178 DLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITI 219
D V +++ R G A + H+ ++ + DR + +
Sbjct: 184 DATNRAVVVELIREAKAR-GAALVGIFHDEEVREAVADRLLDV 225
>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 157
Score = 96.9 bits (241), Expect = 4e-21
Identities = 62/215 (28%), Positives = 95/215 (44%), Gaps = 61/215 (28%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
++N+ Y L+NV L+LK GEIVALV P+G+GKST+L L P G ++
Sbjct: 2 IENLSFRYGGR----TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128
I + ++ LR +IG+V Q
Sbjct: 58 IDGK---DIAKLPLEELR-RRIGYVPQ--------------------------------- 80
Query: 129 DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSI 188
+SGG++QRVA+ RA+ P ++L DEPT LD + +++ +
Sbjct: 81 ------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 189 LKYLVVRSGLAALIATHNHDLASQM-DRQITIRDG 222
L+ L G +I TH+ +LA DR I ++DG
Sbjct: 123 LREL-AEEGRTVIIVTHDPELAELAADRVIVLKDG 156
>gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 96.7 bits (240), Expect = 5e-21
Identities = 70/228 (30%), Positives = 108/228 (47%), Gaps = 21/228 (9%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65
+ +NV SY PVL+++ S++ GE VA+V PSG+GKST++ + L + P G
Sbjct: 329 IEFENVSFSY---PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD-PTSG 384
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-------PQIIAGI 118
++I + D LR +IG V Q+ LL ++ ENI +I +
Sbjct: 385 EILIDGI---DIRDISLDSLR-KRIGIVSQDP-LLFSGTIRENIALGRPDATDEEIEEAL 439
Query: 119 NHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLD 178
A++ +L D R ++SGG++QR+AI RA+ P I++ DE T LD
Sbjct: 440 KLANAHEFIANLPDGYDT--IVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALD 497
Query: 179 LKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
+T + LK L G LI H DR I + +G I +
Sbjct: 498 TETEALIQDALKKL--LKGRTTLIIAHRLSTIKNADRIIVLDNGRIVE 543
>gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 95.3 bits (237), Expect = 1e-20
Identities = 64/227 (28%), Positives = 105/227 (46%), Gaps = 16/227 (7%)
Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65
L L+NV +Y G+ L+N +L+L +GE VA++ SG+GKST+L + P QG
Sbjct: 336 ALELRNVSFTYP--GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQG 393
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
++ + L + I + Q L ++ +N+ A A
Sbjct: 394 SITLNGVEIASLDEQALR----ETISVLTQRVHLFSG-TLRDNLRLANPDASDEELWAAL 448
Query: 126 RAMDLLSYM-DMSQYANRRSSD----ISGGEQQRVAICRA-IANKPLIILADEPTGNLDL 179
+ + L + N + +SGGE++R+A+ RA + + PL +L DEPT LD
Sbjct: 449 QQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLL-DEPTEGLDP 507
Query: 180 KTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
T +QV ++L G L+ TH +MDR I + +G I +
Sbjct: 508 ITERQVLALL--FEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIE 552
>gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the
ATPase component of a bacterial ABC-type Na+ transport
system called NatAB, which catalyzes ATP-dependent
electrogenic Na+ extrusion without mechanically coupled
to proton or K+ uptake. NatB possess six putative
membrane spanning regions at its C-terminus. In B.
subtilis, NatAB is inducible by agents such as ethanol
and protonophores, which lower the protonmotive force
across the membrane. The closest sequence similarity to
NatA is exhibited by DrrA of the two-component
daunomycin- and doxorubicin-efflux system. Hence, the
functional NatAB is presumably assembled with two copies
of the single ATP-binding protein and the single
intergral membrane protein..
Length = 236
Score = 94.9 bits (236), Expect = 2e-20
Identities = 60/220 (27%), Positives = 109/220 (49%), Gaps = 9/220 (4%)
Query: 8 LLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGN 66
L+ ++K +++ + L+ + +++KGEIV + P+G GK+T L I +GLL P G
Sbjct: 19 LIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL-QPTSGE 77
Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVY-QEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
V +A + +K FLR +IG V+ Q+ +L D VI++ I + +
Sbjct: 78 VRVAGLVP---WKRRKKFLR--RIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKK 132
Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
R +L +D+ + + +S G++ R I A+ ++P I+ DEPT LD+ + +
Sbjct: 133 RLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192
Query: 186 FSILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDGMI 224
+ LK G L+ +H D+ + R + I G +
Sbjct: 193 RNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232
>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely
related to eukaryotic MDR proteins. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 234
Score = 94.1 bits (234), Expect = 3e-20
Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 18/225 (8%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
+NV Y G PVL ++ L + GE VALV PSG+GKST++++ D G ++
Sbjct: 3 FKNVTFRYP--GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-------PQIIAGINHK 121
I + D + LR +IG V Q+ L D +V ENI + ++
Sbjct: 61 IDGH---DVRDYTLASLR-RQIGLVSQDVFLFND-TVAENIAYGRPGATREEVEEAARAA 115
Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
A++ M+L D R +SGG++QR+AI RA+ P I++ DE T LD ++
Sbjct: 116 NAHEFIMELPEGYD--TVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES 173
Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
+ V + L+ L+ + H DR + + DG I +
Sbjct: 174 ERLVQAALERLMK--NRTTFVIAHRLSTIENADRIVVLEDGKIVE 216
>gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 93.3 bits (232), Expect = 5e-20
Identities = 57/220 (25%), Positives = 107/220 (48%), Gaps = 13/220 (5%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
L L+N+ Y + + L+ V L+L G + L+ P+G GK+T++ I L P G
Sbjct: 1 LQLENLTKRYGK-KR---ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGT 55
Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
+ I Q + + R +IG++ QE + +F+V E + + + GI K R
Sbjct: 56 IRIDGQ---DVLKQPQKLRR--RIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKAR 110
Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
++L +++ A ++ +SGG ++RV I +A+ P I++ DEPT LD + +
Sbjct: 111 VDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFR 170
Query: 187 SILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDGMIA 225
++L L +++TH D+ S ++ + G +
Sbjct: 171 NLLSELG--EDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
>gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 93.0 bits (231), Expect = 6e-20
Identities = 56/191 (29%), Positives = 102/191 (53%), Gaps = 13/191 (6%)
Query: 38 IVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSD-DKKSFLRCSK--IGFVY 94
I AL PSG+GK++++++ L PD+G + + ++ L D +K FL K IG+V+
Sbjct: 26 ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRV---LVDAEKGIFLPPEKRRIGYVF 82
Query: 95 QEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQR 154
Q+ RL ++V N+ + K+ + L++ + + +R +SGGE+QR
Sbjct: 83 QDARLFPHYTVRGNLRYGM------WKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQR 136
Query: 155 VAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM- 213
VAI RA+ P ++L DEP +LDL +++ L+ L + L +H+ D ++
Sbjct: 137 VAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLA 196
Query: 214 DRQITIRDGMI 224
DR + + +G +
Sbjct: 197 DRVVVLENGKV 207
>gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 92.6 bits (230), Expect = 8e-20
Identities = 56/232 (24%), Positives = 101/232 (43%), Gaps = 48/232 (20%)
Query: 3 SAEVLLLQNVKHSYR-----QVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAG 57
+L ++N+K + + ++ V S+K+GE + LV SG GKST+ +
Sbjct: 1 MEPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLIL 60
Query: 58 LLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAG 117
LE P G ++ + KLS +++
Sbjct: 61 GLEEPTSGEILFEGKDITKLSKEER----------------------------------- 85
Query: 118 INHKTAYQRAMDLLSYMDMSQ-YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGN 176
+R ++LL + + + + R ++SGG++QR+ I RA+A P +I+ADEP
Sbjct: 86 ------RERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSA 139
Query: 177 LDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIADL 227
LD+ Q+ ++LK L GL L +H+ + + DR + G I ++
Sbjct: 140 LDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEI 191
>gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding
protein. In A. tumefaciens cyclic beta-1, 2-glucan must
be transported into the periplasmic space to exert its
action as a virluence factor. This subfamily belongs to
the MRP-like family and is involved in drug, peptide,
and lipid export. The MRP-like family, similar to all
ABC proteins, have a common four-domain core structure
constituted by two membrane-spanning domains each
composed of six transmembrane (TM) helices and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 229
Score = 92.6 bits (230), Expect = 9e-20
Identities = 62/220 (28%), Positives = 106/220 (48%), Gaps = 15/220 (6%)
Query: 10 QNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVII 69
+NV SY + PVL++++ S+K GE VA+V P+G GK+T++++ P +G ++I
Sbjct: 6 ENVNFSYD---EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62
Query: 70 ANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAG---INHKTAYQR 126
+ D + LR S IG V Q+ L +++ENI + A +
Sbjct: 63 DGI---DIRDISRKSLR-SMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAG 117
Query: 127 AMDLLSYM--DMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQ 184
A D + + ++S GE+Q +AI RA+ P I++ DE T N+D +T +
Sbjct: 118 AHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKL 177
Query: 185 VFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
+ L+ L G ++I H D+ + + DG I
Sbjct: 178 IQEALEKL--MKGRTSIIIAHRLSTIKNADKILVLDDGKI 215
>gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is
expressed in the mitochondria. Although the specific
function of ATM1 is unknown, its disruption results in
the accumulation of excess mitochondrial iron, loss of
mitochondrial cytochromes, oxidative damage to
mitochondrial DNA, and decreased levels of cytosolic
heme proteins. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 236
Score = 92.2 bits (229), Expect = 1e-19
Identities = 69/223 (30%), Positives = 104/223 (46%), Gaps = 15/223 (6%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
+NV +Y PVL++V ++ G+ VA+V PSG+GKSTIL + G+++
Sbjct: 3 FENVTFAYDP---GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAG-INHKTAYQRA 127
I Q + + LR IG V Q+ L D ++ NI + + A A + A
Sbjct: 60 IDGQ---DIREVTLDSLR-RAIGVVPQDTVLFND-TIGYNIRYGRPDATDEEVIEAAKAA 114
Query: 128 MDLLSYMDMSQ-YANR---RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183
M Y R +SGGE+QRVAI RAI P I+L DE T LD T +
Sbjct: 115 QIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTER 174
Query: 184 QVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
++ + L+ V G ++ H D+ I ++DG I +
Sbjct: 175 EIQAALR--DVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVE 215
>gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 91.9 bits (228), Expect = 1e-19
Identities = 52/201 (25%), Positives = 98/201 (48%), Gaps = 17/201 (8%)
Query: 31 LSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKI 90
L++ GEIVA++ PSG GKST+L++ E P G ++I ++ +
Sbjct: 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERP------V 73
Query: 91 GFVYQEHRLLMDFSVIENIIFPQIIAGIN-----HKTAYQRAMDLLSYMDMSQYANRRSS 145
++QE+ L +V +NI G++ + ++ + + ++ + R
Sbjct: 74 SMLFQENNLFAHLTVAQNIGL-----GLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG 128
Query: 146 DISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATH 205
++SGG++QRVA+ R + + I+L DEP LD ++ +++ L + L+ TH
Sbjct: 129 ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTH 188
Query: 206 N-HDLASQMDRQITIRDGMIA 225
+ D A DR + + +G IA
Sbjct: 189 HPEDAARIADRVVFLDNGRIA 209
>gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC
superfamily [Inorganic ion transport and metabolism].
Length = 790
Score = 91.6 bits (227), Expect = 1e-19
Identities = 66/210 (31%), Positives = 101/210 (48%), Gaps = 16/210 (7%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
PVL ++ +++ G+ VALV PSG GKSTI+ + + G++ I Q + + +S
Sbjct: 552 PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQ---DIRNVTQS 608
Query: 84 FLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDL----LSYMDMSQY 139
LR S IG V Q+ L D +++ NI + + A A +A + L + + Y
Sbjct: 609 SLR-SSIGVVPQDTVLFND-TILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPE--GY 664
Query: 140 ANR---RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRS 196
R R +SGGE+QRVAI R I P IIL DE T LD T + + + L L +
Sbjct: 665 NTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLC--A 722
Query: 197 GLAALIATHNHDLASQMDRQITIRDGMIAD 226
++ H D + I +G I +
Sbjct: 723 NRTTIVVAHRLSTIVNADLILVISNGRIVE 752
>gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC
superfamily [Intracellular trafficking, secretion, and
vesicular transport].
Length = 591
Score = 91.8 bits (228), Expect = 1e-19
Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 19/210 (9%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82
VL+ V ++ KGE VA+V +G+GKSTIL + + G+++I Q + +
Sbjct: 366 KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSILIDGQ---DIKEVSL 420
Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM-----DLLSYMD-- 135
LR IG V Q+ +L + +++ NI + A + + D++S +
Sbjct: 421 ESLR-QSIGVVPQDS-VLFNDTILYNIKYGNPSAS--DEEVVEACKRAGLHDVISRLPDG 476
Query: 136 MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVR 195
R +SGGE+QRV++ RA I+L DE T LD +T +++ ++ ++
Sbjct: 477 YQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-- 534
Query: 196 SGLAALIATHNHDLASQMDRQITIRDGMIA 225
SG ++ H DL D+ I + +G +
Sbjct: 535 SGRTVIMIVHRLDLLKDFDKIIVLDNGTVK 564
>gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 716
Score = 91.6 bits (227), Expect = 2e-19
Identities = 66/226 (29%), Positives = 105/226 (46%), Gaps = 17/226 (7%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
++V +Y PVL+N+ +++ GE+VALV PSG+GKSTI + P G ++
Sbjct: 468 FEDVSFAYPT-RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL 526
Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINH-----KTA 123
+ +SD +LR KIG V QE +L S+ ENI + A K A
Sbjct: 527 LDGV---PISDINHKYLR-RKIGLVGQE-PVLFSGSIRENIAYGLDNATDEEIEAAAKMA 581
Query: 124 YQRAMDLLSYMDMSQYAN--RRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
A + ++ + S +SGG++QR+AI RA+ P +++ DE T LD ++
Sbjct: 582 N--AHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAES 639
Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIADL 227
V L L G L+ H D+ + I G + ++
Sbjct: 640 EYLVQEALDRL--MQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEM 683
>gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 90.3 bits (224), Expect = 3e-19
Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 54/243 (22%)
Query: 5 EVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQ 64
++ L+N+ +Y P+LENV L+L GE + LV +G GKST+L I PD
Sbjct: 2 SMITLENLSLAYGDR----PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS 57
Query: 65 GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENII-------------- 110
G V L ++G++ QE L + +V++ +I
Sbjct: 58 GEVTRPKGL---------------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELE 102
Query: 111 ----------------FPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQR 154
++ ++ T RA + L + +R S +SGG ++R
Sbjct: 103 EAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD-EDRPVSSLSGGWRRR 161
Query: 155 VAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMD 214
VA+ RA+ +P ++L DEPT +LDL++ + + YL G ++ +H+ +
Sbjct: 162 VALARALLEEPDLLLLDEPTNHLDLESIEWLED---YLKRYPG-TVIVVSHDRYFLDNVA 217
Query: 215 RQI 217
I
Sbjct: 218 THI 220
Score = 79.1 bits (195), Expect = 1e-15
Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 36/217 (16%)
Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQ 64
VL +NV Y +L+++ + +G+ +A+V P+G GKST+L +AG L P
Sbjct: 321 VLEFENVSKGY---DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG-PLS 376
Query: 65 GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEH-RLLMDFSVIENI--IFPQIIAGINHK 121
G V + + KIG+ Q L D +V+E + FP
Sbjct: 377 GTVKVGETV---------------KIGYFDQHRDELDPDKTVLEELSEGFPDGD------ 415
Query: 122 TAYQRAMDLLSYMDMSQ-YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
Q L + + +SGGE+ R+ + + + P ++L DEPT +LD++
Sbjct: 416 --EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIE 473
Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQI 217
+ + + + L+ G L+ +H+ ++ +I
Sbjct: 474 SLEA---LEEALLDFEG-TVLLVSHDRYFLDRVATRI 506
>gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 90.3 bits (224), Expect = 4e-19
Identities = 56/220 (25%), Positives = 104/220 (47%), Gaps = 11/220 (5%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
++NV SY VL++V L + KG I +++ P+G GKST+L + L D G +
Sbjct: 4 IENVSKSYGTK----VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM 128
I + + K+ + QE+ + +V + + F + T R +
Sbjct: 60 IDGLELTSTPSKELA----KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI 115
Query: 129 --DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
+ + Y+ + ++R ++SGG++QR I +A +L DEP NLD+K + Q+
Sbjct: 116 INEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIM 175
Query: 187 SILKYLVVRSGLAALIATHNHDLASQ-MDRQITIRDGMIA 225
IL+ L G ++ H+ + AS D + +++G +
Sbjct: 176 KILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVV 215
>gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a
mitochondrial ATP-binding cassette protein involved in
iron homeostasis and one of four ABC transporters
expressed in the mitochondrial inner membrane, the other
three being MDL1(ABC7), MDL2, and ATM1. In fact, the
yeast MDL1 (multidrug resistance-like protein 1) and
MDL2 (multidrug resistance-like protein 2) transporters
are also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another..
Length = 238
Score = 89.8 bits (223), Expect = 5e-19
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 19/226 (8%)
Query: 9 LQNVKHSYRQVGKP-FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNV 67
+NV Y +P P+L+ + L++ G+ VALV SG GKST++ + P G +
Sbjct: 3 FKNVSFRYPS--RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-------PQIIAGINH 120
++ L+ +LR S+IG V QE +L D ++ ENI + ++
Sbjct: 61 LLDGVDIRDLN---LRWLR-SQIGLVSQE-PVLFDGTIAENIRYGKPDATDEEVEEAAKK 115
Query: 121 KTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
+ M L D R S +SGG++QR+AI RA+ P I+L DE T LD +
Sbjct: 116 ANIHDFIMSLPDGYD--TLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAE 173
Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
+ + V L G ++ H D +++G + +
Sbjct: 174 SEKLVQEALDR--AMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVE 217
>gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents
ABC transporters involved in peptide antibiotic
resistance. Bacitracin is a dodecapeptide antibiotic
produced by B. licheniformis and B. subtilis. The
synthesis of bacitracin is non-ribosomally catalyzed by
a multienzyme complex BcrABC. Bacitracin has potent
antibiotic activity against gram-positive bacteria. The
inhibition of peptidoglycan biosynthesis is the best
characterized bacterial effect of bacitracin. The
bacitracin resistance of B. licheniformis is mediated by
the ABC transporter Bcr which is composed of two
identical BcrA ATP-binding subunits and one each of the
integral membrane proteins, BcrB and BcrC. B. subtilis
cells carrying bcr genes on high-copy number plasmids
develop collateral detergent sensitivity, a similar
phenomenon in human cells with overexpressed multi-drug
resistance P-glycoprotein..
Length = 208
Score = 89.5 bits (222), Expect = 6e-19
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 15/212 (7%)
Query: 17 RQVGKPF---PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQL 73
+ K + VL+++ L +KKGEI + P+G GK+T + I L PD G + +
Sbjct: 4 NDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKS 63
Query: 74 CNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSY 133
K + + +IG + + + + EN+ + GI K R ++L
Sbjct: 64 YQKNIEALR------RIGALIEAPGFYPNLTARENLRLLARLLGIRKK----RIDEVLDV 113
Query: 134 MDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193
+ + A ++ S G +QR+ I A+ P +++ DEPT LD +++ ++ L
Sbjct: 114 VGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSL- 172
Query: 194 VRSGLAALIATHN-HDLASQMDRQITIRDGMI 224
G+ LI++H ++ DR I G +
Sbjct: 173 RDQGITVLISSHLLSEIQKVADRIGIINKGKL 204
>gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin
exporters. Many non-lantibiotic bacteriocins of lactic
acid bacteria are produced as precursors which have
N-terminal leader peptides that share similarities in
amino acid sequence and contain a conserved processing
site of two glycine residues in positions -1 and -2. A
dedicated ATP-binding cassette (ABC) transporter is
responsible for the proteolytic cleavage of the leader
peptides and subsequent translocation of the
bacteriocins across the cytoplasmic membrane..
Length = 220
Score = 89.1 bits (221), Expect = 9e-19
Identities = 68/231 (29%), Positives = 116/231 (50%), Gaps = 29/231 (12%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNV 67
+NV SY + P L+NV L+++ GE VA++ G+GKST+L +AGL + P G+V
Sbjct: 5 FRNVSFSYP--NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK-PTSGSV 61
Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRA 127
++ +L + LR IG+V Q+ L ++ +NI +A +R
Sbjct: 62 LLDGTDIRQLD---PADLR-RNIGYVPQDVTLFYG-TLRDNITLGAPLA------DDERI 110
Query: 128 MDLLSYMDMSQYANR-----------RSSDISGGEQQRVAICRAIANKPLIILADEPTGN 176
+ ++ + N+ R +SGG++Q VA+ RA+ N P I+L DEPT
Sbjct: 111 LRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSA 170
Query: 177 LDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG-MIAD 226
+D+ + +++ L+ L+ +I TH L +DR I + G ++AD
Sbjct: 171 MDMNSEERLKERLRQLL--GDKTLIIITHRPSLLDLVDRIIVMDSGRIVAD 219
>gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 88.8 bits (220), Expect = 1e-18
Identities = 65/237 (27%), Positives = 107/237 (45%), Gaps = 16/237 (6%)
Query: 1 MDSAEVLLLQNVKHSY-RQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLL 59
M +L + + Y G +V L GE++ +V SG+GK+T+L
Sbjct: 1 MMDKPLLSVSGLSKLYGPGKG-----CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR 55
Query: 60 EVPDQGNVIIANQLCN-----KLSDDKKSFLRCSKIGFVYQEHR--LLMDFSVIENIIFP 112
PD G V + +S+ ++ L ++ GFV+Q R L M S NI
Sbjct: 56 LTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGER 115
Query: 113 QIIAGINH-KTAYQRAMDLLSYMDMSQ-YANRRSSDISGGEQQRVAICRAIANKPLIILA 170
+ G H A D L +++ + SGG QQR+ I R + +P ++
Sbjct: 116 LMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFM 175
Query: 171 DEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIAD 226
DEPTG LD+ ++ +L+ LV GLA +I TH+ +A + DR + ++ G + +
Sbjct: 176 DEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232
>gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC
transporters homologous to the Drosophila white gene,
which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners..
Length = 226
Score = 88.7 bits (220), Expect = 1e-18
Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 15/207 (7%)
Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPD- 63
VL +V + K +L +V L ++ G+++A++ SG+GK+T+L I+G +E
Sbjct: 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT 62
Query: 64 -QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKT 122
G ++ Q F +C + +V Q+ LL +V E + + I+ +
Sbjct: 63 TSGQILFNGQ-----PRKPDQFQKC--VAYVRQDDILLPGLTVRETLTYTAILRLPRKSS 115
Query: 123 AYQRAM----DLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLD 178
R LL + +++ ISGGE++RV+I + P +++ DEPT LD
Sbjct: 116 DAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175
Query: 179 LKTAQQVFSILKYLVVRSGLAALIATH 205
TA + S L L R ++ H
Sbjct: 176 SFTALNLVSTLSQL-ARRNRIVILTIH 201
>gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 88.4 bits (219), Expect = 1e-18
Identities = 65/221 (29%), Positives = 101/221 (45%), Gaps = 18/221 (8%)
Query: 15 SYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQGNVIIANQL 73
SY G+ +L+ V L L+ GE++A++ P+G GKST+L ++G L PD G V +
Sbjct: 8 SYSLAGRR--LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS-PDSGEVTLNGVP 64
Query: 74 CNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR--AMDLL 131
N ++ + R + Q L F+V E + +I + A L
Sbjct: 65 LNSWPPEELARHR----AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQAL 120
Query: 132 SYMDMSQYANRRSSDISGGEQQRVAICRAIAN------KPLIILADEPTGNLDLKTAQQV 185
+ D+S A R +SGGEQQRV + R +A + DEPT LD+
Sbjct: 121 AATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHT 180
Query: 186 FSILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225
+ + L R G A L H+ +LA+Q DR + + G +
Sbjct: 181 LRLARQL-AREGGAVLAVLHDLNLAAQYADRIVLLHQGRVI 220
>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They
export degradative enzymes by using a type I protein
secretion system and lack an N-terminal signal peptide,
but contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family
of ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA..
Length = 173
Score = 88.3 bits (219), Expect = 1e-18
Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 47/219 (21%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65
L ++NV S+R G PVL NV S++ GE +A++ PSG+GKST+ I GLL P G
Sbjct: 1 LEVENV--SFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR-PTSG 57
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
V + ++ D +G++ Q+ L S+ ENI
Sbjct: 58 RVRLDGADISQW--DPNELGDH--VGYLPQDDELF-SGSIAENI---------------- 96
Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
+SGG++QR+ + RA+ P I++ DEP +LD++ + +
Sbjct: 97 ---------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERAL 135
Query: 186 FSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
+ L G ++ H + + DR + + DG +
Sbjct: 136 NQAIAALKAA-GATRIVIAHRPETLASADRILVLEDGRV 173
>gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast
cancer resistance protein) [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 613
Score = 88.5 bits (219), Expect = 1e-18
Identities = 60/214 (28%), Positives = 110/214 (51%), Gaps = 21/214 (9%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLE--VPDQGNVIIANQLCNKLSDDK 81
+L+ V + K GE++A++ PSG+GK+T+L+ AG L + G +++ N D
Sbjct: 45 ILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILL-----NGRPRDS 99
Query: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM---DLLSYMDMSQ 138
+SF + S G+V Q+ LL +V E + F ++ + + ++ +++S + + +
Sbjct: 100 RSFRKIS--GYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEK 157
Query: 139 YANRRSSD-----ISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193
A+ + +SGGE++RV+I + P I+ DEPT LD +A QV +LK L
Sbjct: 158 CADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRL- 216
Query: 194 VRSGLAALIATHN--HDLASQMDRQITIRDGMIA 225
RSG + H +L D+ + + +G +
Sbjct: 217 ARSGRTVICTIHQPSSELFELFDKLLLLSEGEVV 250
>gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 88.3 bits (219), Expect = 2e-18
Identities = 51/215 (23%), Positives = 99/215 (46%), Gaps = 18/215 (8%)
Query: 1 MDSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLL- 59
+ ++++ Y L++++L + K ++ AL+ PSG GKST+L +
Sbjct: 2 TMKIPAIEVRDLNLYYGD----KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57
Query: 60 ----EVPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQII 115
+G V++ + D R ++G V+Q+ S+ +N+ + +
Sbjct: 58 DLIPGARVEGEVLLDGKNIYDPKVDVVELRR--RVGMVFQKPNPF-PMSIYDNVAYGLRL 114
Query: 116 AGINHKTAYQRAMDLLS----YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILAD 171
GI K + L + ++ ++ + +SGG+QQR+ I RA+A KP ++L D
Sbjct: 115 HGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMD 174
Query: 172 EPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHN 206
EPT LD + ++ ++ L + +I THN
Sbjct: 175 EPTSALDPISTLKIEELITEL--KKKYTIVIVTHN 207
>gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 86.9 bits (215), Expect = 4e-18
Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 14/188 (7%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD---QGNVIIANQLCNKLSDDK 81
+L NV+ ++ KGEIV L+ PSG GKST+L G + + Q + L +
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENIIF--PQIIAGINHKTAYQRAMDLLSYMDMSQY 139
+ +IG ++Q+ L SV +N++F P + G + A A L +
Sbjct: 77 R------QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNA---ANAALERSGLDGA 127
Query: 140 ANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLA 199
++ + +SGG++ RVA+ RA+ +P +L DEP LD+ Q + V +G+
Sbjct: 128 FHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIP 187
Query: 200 ALIATHNH 207
+ TH+
Sbjct: 188 TVQVTHDL 195
>gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of
the carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
Pentoses include xylose, arabinose, and ribose.
Important hexoses include glucose, galactose, and
fructose. In members of the Carb_monos family, the
single hydrophobic gene product forms a homodimer while
the ABC protein represents a fusion of two
nucleotide-binding domains. However, it is assumed that
two copies of the ABC domains are present in the
assembled transporter..
Length = 163
Score = 86.6 bits (215), Expect = 5e-18
Identities = 52/220 (23%), Positives = 89/220 (40%), Gaps = 60/220 (27%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
L L+ + + V L+ V LS+++GE+ AL+ +G GKST++ I L PD G
Sbjct: 1 LELRGITKRFGGV----KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE 56
Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
+++ + + S R + I VYQ
Sbjct: 57 ILVDGKEVSFASPRDA---RRAGIAMVYQ------------------------------- 82
Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
+S GE+Q V I RA+A +++ DEPT L +++F
Sbjct: 83 --------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF 122
Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDGMIA 225
+++ L G+A + +H D ++ DR +RDG +
Sbjct: 123 KVIRRL-RAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
>gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 86.1 bits (213), Expect = 7e-18
Identities = 54/215 (25%), Positives = 92/215 (42%), Gaps = 20/215 (9%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
+L ++ + GE A+V P+G GK+T+L + P G+V + + +
Sbjct: 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGR--RFGKGETIF 102
Query: 84 FLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIA-------GINH----KTAYQRAMDLLS 132
LR +IG V L F V E + ++ GI A LL
Sbjct: 103 ELR-KRIGLV--SSELHERFRVRETVR--DVVLSGFFASIGIYQEDLTAEDLAAAQWLLE 157
Query: 133 YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYL 192
+ A+R +S GEQ+RV I RA+ P +++ DEP LDL +Q+ + L+ L
Sbjct: 158 LLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEEL 217
Query: 193 VVR-SGLAALIATHN-HDLASQMDRQITIRDGMIA 225
A L TH+ ++ ++ +++G +
Sbjct: 218 AASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252
>gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy..
Length = 237
Score = 86.1 bits (213), Expect = 8e-18
Identities = 60/225 (26%), Positives = 110/225 (48%), Gaps = 18/225 (8%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
++V+ Y+ G +L+N+ L +K GE+V +V SG+GKST+ + VP+ G V+
Sbjct: 3 FEHVRFRYKPDGPV--ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFP-------QIIAGINHK 121
+ + L+ ++LR ++G V QE+ +L + S+ +NI ++I
Sbjct: 61 VDG---HDLALADPAWLR-RQVGVVLQEN-VLFNRSIRDNIALADPGMSMERVIEAAKLA 115
Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
A+ +L D + + +SGG++QR+AI RA+ + P I++ DE T LD ++
Sbjct: 116 GAHDFISELPEGYD--TIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173
Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
+ + + +G +I H DR I + G I +
Sbjct: 174 EHAIMRNMHDIC--AGRTVIIIAHRLSTVKNADRIIVMEKGRIVE 216
>gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 85.3 bits (211), Expect = 1e-17
Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 12/208 (5%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
P+L + ++ G+ VA+V SG GKSTIL + + G++ I Q + D +
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQ---DIRDVTQQ 333
Query: 84 FLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMD-----MSQ 138
LR IG V Q+ L D ++ NI + + A A A + ++
Sbjct: 334 SLR-RAIGIVPQDTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDT 391
Query: 139 YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGL 198
R +SGGE+QRVAI R I P I++ DE T LD T Q + + L+ V +G
Sbjct: 392 GVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALR--EVSAGR 449
Query: 199 AALIATHNHDLASQMDRQITIRDGMIAD 226
L+ H D I + +G I +
Sbjct: 450 TTLVIAHRLSTIIDADEIIVLDNGRIVE 477
>gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide or belong in different
polypeptide chains.
Length = 119
Score = 85.1 bits (211), Expect = 1e-17
Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 11/127 (8%)
Query: 50 STIL-HIAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIEN 108
ST+L I GLL+ P G +++ + LS K +IG V+Q+ +L + +V EN
Sbjct: 1 STLLKLITGLLQ-PTSGTILLDGEDGTDLSSRK---ALRKRIGVVFQDPQLFPELTVREN 56
Query: 109 IIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR-RSSDISGGEQQRVAICRAIANKPLI 167
+ F + RA + L + + + +R +SGG++QRVAI RA+ KP +
Sbjct: 57 LFFGLRDKEAD-----ARAEEALERVGLPDFLDRSPVGTLSGGQKQRVAIARALLKKPKL 111
Query: 168 ILADEPT 174
+L DEPT
Sbjct: 112 LLLDEPT 118
>gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related
proteins, ABC superfamily [Lipid transport and
metabolism, General function prediction only].
Length = 885
Score = 84.7 bits (209), Expect = 2e-17
Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 8/219 (3%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
L+L N+ Y G + + ++ GE L+ +G GK+T + P G
Sbjct: 565 LVLNNLSKVY---GGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGE 621
Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
+I +D ++ + +G+ Q L + + E++ F + G+
Sbjct: 622 ALIKGHDITVSTDFQQVRKQ---LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSA 678
Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
LL + + YAN++ SGG ++R++ A+ P +IL DEP+ LD K + ++
Sbjct: 679 IEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLW 738
Query: 187 SILKYLVVRSGLAALIATHNHDLASQMDRQITI-RDGMI 224
I+ L ++G A ++ +H+ + A + + I G +
Sbjct: 739 DIIARL-RKNGKAIILTSHSMEEAEALCTRTAIMVIGQL 776
>gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport
system; part of the binding-protein-dependent transport
system tbpA-thiPQ for thiamine and TPP. Probably
responsible for the translocation of thiamine across the
membrane. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 84.6 bits (209), Expect = 2e-17
Identities = 53/197 (26%), Positives = 99/197 (50%), Gaps = 9/197 (4%)
Query: 31 LSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKI 90
L+ +GEI A+V PSG+GKST+L++ E P G V+I D + +
Sbjct: 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGV------DVTAAPPADRPV 72
Query: 91 GFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMD-LLSYMDMSQYANRRSSDISG 149
++QE+ L +V +N+ + G+ ++A++ L+ + ++ R ++SG
Sbjct: 73 SMLFQENNLFAHLTVEQNVGL-GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSG 131
Query: 150 GEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDL 209
GE+QRVA+ R + ++L DEP LD ++ ++ L + + L+ TH +
Sbjct: 132 GERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPED 191
Query: 210 ASQM-DRQITIRDGMIA 225
A ++ R + + +G IA
Sbjct: 192 AKRLAQRVVFLDNGRIA 208
>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen
Processing; TAP is essential for peptide delivery from
the cytosol into the lumen of the endoplasmic reticulum
(ER), where these peptides are loaded on major
histocompatibility complex (MHC) I molecules. Loaded
MHC I leave the ER and display their antigenic cargo on
the cell surface to cytotoxic T cells. Subsequently,
virus-infected or malignantly transformed cells can be
eliminated. TAP belongs to the large family of
ATP-binding cassette (ABC) transporters, which
translocate a vast variety of solutes across membranes..
Length = 226
Score = 84.2 bits (208), Expect = 3e-17
Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 15/222 (6%)
Query: 9 LQNVKHSYRQVGKP-FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNV 67
QNV +Y +P VL++V +L GE+ ALV PSG+GKST++ + P G V
Sbjct: 14 FQNVTFAYPT--RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV 71
Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR- 126
++ + +S + +L SK+ V QE +L S+ +NI + +
Sbjct: 72 LLDGK---PISQYEHKYLH-SKVSLVGQE-PVLFARSLQDNIAYGLQSCSFECVKEAAQK 126
Query: 127 --AMDLLSYMDMSQY--ANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTA 182
A +S + + S +SGG++QRVAI RA+ P +++ DE T LD ++
Sbjct: 127 AHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE 186
Query: 183 QQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
QQV L R + L+ H + D+ + + G I
Sbjct: 187 QQVQQALYDWPERRTV--LVIAHRLSTVERADQILVLDGGRI 226
>gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 83.8 bits (207), Expect = 3e-17
Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 7/221 (3%)
Query: 8 LLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNV 67
L ++ H + + + ++++ + KGEIV + +G GKST L + L +P G V
Sbjct: 22 LKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV 81
Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVY-QEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
+ + ++ +LR IG V Q+ +L D ++++ ++I I +R
Sbjct: 82 RVNGKDP---FRRREEYLR--SIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAER 136
Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
L +D+ + +S G++ R + A+ + P ++ DEPT LD+ +
Sbjct: 137 LDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR 196
Query: 187 SILKYLVVRSGLAALIATHN-HDLASQMDRQITIRDGMIAD 226
LK L+ TH D+A+ DR + I G +
Sbjct: 197 EFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVF 237
>gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 83.0 bits (205), Expect = 6e-17
Identities = 42/205 (20%), Positives = 93/205 (45%), Gaps = 18/205 (8%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDK 81
++N+ + GEI L+ P+G GK+T I GLLE P +G + ++ ++
Sbjct: 15 KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE-PTEGEITWNGGPLSQEIKNR 73
Query: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYAN 141
IG++ +E L +V + + + + G+ ++ L +++
Sbjct: 74 --------IGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKT 125
Query: 142 RRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVR---SGL 198
++ ++S G QQ++ A+ ++P +++ DEP LD + +LK + G
Sbjct: 126 KKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVE----LLKDAIFELKEEGA 181
Query: 199 AALIATHNHDLASQM-DRQITIRDG 222
+ ++H + ++ DR + ++ G
Sbjct: 182 TIIFSSHRMEHVEELCDRLLMLKKG 206
>gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment
(EP) precursor transport, regulation of
lipid-trafficking mechanisms, and pleiotropic drug
resistance (DR). DR is a well-described phenomenon
occurring in fungi and shares several similarities with
processes in bacteria and higher eukaryotes. Compared
to other members of the ABC transporter subfamilies, the
ABCG transporter family is composed of proteins that
have an ATP-binding cassette domain at the N-terminus
and a TM (transmembrane) domain at the C-terminus..
Length = 194
Score = 79.0 bits (195), Expect = 9e-16
Identities = 57/185 (30%), Positives = 86/185 (46%), Gaps = 39/185 (21%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLEVP-DQGNVIIANQLCNKLSDD 80
+L+NV K GE+ A++ PSG GKST+L+ AG G V+I N D
Sbjct: 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLI-----NGRPLD 76
Query: 81 KKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYA 140
K+SF + IG+V Q+ L +V E ++F A
Sbjct: 77 KRSFRKI--IGYVPQDDILHPTLTVRETLMFA---------------------------A 107
Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200
R +SGGE++RV+I + + P ++ DEPT LD +A QV S+L+ L +G
Sbjct: 108 KLRG--LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRL-ADTGRTI 164
Query: 201 LIATH 205
+ + H
Sbjct: 165 ICSIH 169
>gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminas, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 204
Score = 78.6 bits (194), Expect = 1e-15
Identities = 49/209 (23%), Positives = 98/209 (46%), Gaps = 28/209 (13%)
Query: 21 KPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDD 80
+ L++++L + KGE+VA+V P G+GKS++L + L +L
Sbjct: 16 ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLL-----------------SALLGELEKL 58
Query: 81 KKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-----PQIIAGINHKTAYQRAMDLLSYMD 135
S I +V QE + + ++ ENI+F + + A + +++L D
Sbjct: 59 SGSVSVPGSIAYVSQE-PWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGD 117
Query: 136 MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS--ILKYLV 193
+++ + + +SGG++QR+++ RA+ + I L D+P +D + +F IL L
Sbjct: 118 LTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLL- 175
Query: 194 VRSGLAALIATHNHDLASQMDRQITIRDG 222
+ ++ TH L D+ + + +G
Sbjct: 176 -LNNKTRILVTHQLQLLPHADQIVVLDNG 203
>gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
In members of Carb_Monos family the single hydrophobic
gene product forms a homodimer, while the ABC protein
represents a fusion of two nucleotide-binding domains.
However, it is assumed that two copies of the ABC
domains are present in the assembled transporter..
Length = 182
Score = 78.2 bits (193), Expect = 2e-15
Identities = 42/204 (20%), Positives = 85/204 (41%), Gaps = 40/204 (19%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
+ +V ++ GEIV + G G++ + + GL P G + + + ++
Sbjct: 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-PASGEITLDGK---PVTRRSPR 70
Query: 84 FLRCSKIGFVYQEHR---LLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYA 140
+ I +V ++ + L++D SV ENI ++
Sbjct: 71 DAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLL------------------------- 105
Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200
SGG QQ+V + R +A P +++ DEPT +D+ +++ +++ L
Sbjct: 106 -------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158
Query: 201 LIATHNHDLASQMDRQITIRDGMI 224
LI++ +L DR + + +G I
Sbjct: 159 LISSELDELLGLCDRILVMYEGRI 182
>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
protein/mitoxantrone resistance protein, ABC superfamily
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 1381
Score = 76.5 bits (188), Expect = 6e-15
Identities = 53/211 (25%), Positives = 101/211 (47%), Gaps = 31/211 (14%)
Query: 22 PFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDD 80
P P L++++ +KKG++VA+V P G+GKS++L I G + G+V +
Sbjct: 533 PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP-KLSGSVAV----------- 580
Query: 81 KKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-----PQIIAGINHKTAYQRAMDLLSYMD 135
+ +V Q+ + +V ENI+F + + A ++ +++L + D
Sbjct: 581 ------NGSVAYVPQQPWIQNG-TVRENILFGSPYDEERYDKVIKACALKKDLEILPFGD 633
Query: 136 MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFS--ILKYLV 193
+++ R + +SGG++QR+++ RA+ I L D+P +D + +F I L
Sbjct: 634 LTEIGERGIN-LSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL- 691
Query: 194 VRSGLAALIATHNHDLASQMDRQITIRDGMI 224
G ++ TH D+ I ++DG I
Sbjct: 692 --RGKTVILVTHQLQFLPHADQIIVLKDGKI 720
Score = 47.6 bits (113), Expect = 3e-06
Identities = 38/185 (20%), Positives = 78/185 (42%), Gaps = 19/185 (10%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVI 68
+++ YR VL+ + ++K GE V +V +G GKS+++ L P +G ++
Sbjct: 1141 FEDLSLRYRPNLPL--VLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEIL 1198
Query: 69 IANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENI-IFPQI-------IAGINH 120
I +K+ LR S++ + Q+ L +V N+ F +
Sbjct: 1199 IDGVDISKIG---LHDLR-SRLSIIPQDPVLFSG-TVRFNLDPFDEYSDDEIWEALERCQ 1253
Query: 121 KTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
++ + + + S G++Q + + RA+ K I++ DE T ++D +
Sbjct: 1254 LKDVVSSLPG----GLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPE 1309
Query: 181 TAQQV 185
T +
Sbjct: 1310 TDALI 1314
>gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 76.1 bits (187), Expect = 7e-15
Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 19/214 (8%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82
L + L + +G+ V ++ +G GKST+L+ IAG L P G ++I K S K
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL-KPTSGQILIDGVDVTKKSVAK- 77
Query: 83 SFLRCSKIGFVYQ--EHRLLMDFSVIENIIFPQI---IAGINHKTAYQRA---MDLLSYM 134
R + + V+Q + ++ EN+ + G++ +R + L+ +
Sbjct: 78 ---RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARL 134
Query: 135 DMSQYANRRSSDI---SGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKY 191
+ NR S I SGG++Q +++ A + P I+L DE T LD KTA+ V +
Sbjct: 135 GLG-LENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAK 193
Query: 192 LVVRSGLAALIATHNHDLASQM-DRQITIRDGMI 224
+V L L+ THN + A +R I + G I
Sbjct: 194 IVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKI 227
>gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in
cytochrome bd biogenesis. The CydC and CydD proteins
are important for the formation of cytochrome bd
terminal oxidase of E. coli and it has been proposed
that they were necessary for biosynthesis of the
cytochrome bd quinol oxidase and for periplasmic c-type
cytochromes. CydCD were proposed to determine a
heterooligomeric complex important for heme export into
the periplasm or to be involved in the maintenance of
the proper redox state of the periplasmic space. In
Bacillus subtilius, the absence of CydCD does not affect
the presence of halo-cytochrome c in the membrane and
this observation suggests that CydCD proteins are not
involved in the export of heme in this organism..
Length = 178
Score = 74.5 bits (183), Expect = 2e-14
Identities = 62/219 (28%), Positives = 95/219 (43%), Gaps = 46/219 (21%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQG 65
L + NV SY + VL+N+ L LK+GE +AL+ SG+GKST+L + G L+ P QG
Sbjct: 1 LSINNVSFSYP--EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK-PQQG 57
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ 125
+ + + L S I + Q L D ++ N+
Sbjct: 58 EITLDGVPVSDLEK-----ALSSLISVLNQRPYLF-DTTLRNNL---------------- 95
Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
RR SGGE+QR+A+ R + I+L DEPT LD T +Q+
Sbjct: 96 ---------------GRR---FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQL 137
Query: 186 FSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMI 224
S++ V + TH+ MD+ + + +G I
Sbjct: 138 LSLI--FEVLKDKTLIWITHHLTGIEHMDKILFLENGKI 174
>gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 74.7 bits (183), Expect = 2e-14
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 25/218 (11%)
Query: 22 PFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQL------CN 75
++ V ++L +GEI LV SG+GKS I + V + A+++
Sbjct: 19 WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKA--ICGVNKDNWRVTADRMRFDDIDLL 76
Query: 76 KLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKT-----------AY 124
+LS ++ L + ++QE + +D S + Q+I I T
Sbjct: 77 RLSPRERRKLVGHNVSMIFQEPQSCLDPS---ERVGRQLIQNIPAWTYKGRWWQRFGWRK 133
Query: 125 QRAMDLLSYMDMSQYANRRSS---DISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
+RA++LL + + + + S +++ GE Q+V I A+AN+P +++ADEPT +++ T
Sbjct: 134 RRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTT 193
Query: 182 AQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITI 219
Q+F +L L S L+ +H+ + SQ +I +
Sbjct: 194 QAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINV 231
>gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 73.7 bits (181), Expect = 4e-14
Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 20/205 (9%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDK 81
F L+++ + KGE V ++ +G GKST+L IAG+ + P G V + ++ +
Sbjct: 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK-PTSGKVKVTGKVAPLIELG- 97
Query: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYAN 141
GF + + ENI +I G+ K ++ +++ + ++ + +
Sbjct: 98 --------AGFD-------PELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFID 142
Query: 142 RRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAAL 201
+ S G R+A A +P I+L DE D ++ L L V +
Sbjct: 143 QPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNEL-VEKNKTIV 201
Query: 202 IATHNHDLASQM-DRQITIRDGMIA 225
+ +H+ Q DR I + G I
Sbjct: 202 LVSHDLGAIKQYCDRAIWLEHGQIR 226
>gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt The KpsT/Wzt ABC transporter
subfamily is involved in extracellular polysaccharide
export. Among the variety of membrane-linked or
extracellular polysaccharides excreted by bacteria, only
capsular polysaccharides, lipopolysaccharides, and
teichoic acids have been shown to be exported by ABC
transporters. A typical system is made of a conserved
integral membrane and an ABC. In addition to these
proteins, capsular polysaccharide exporter systems
require two 'accessory' proteins to perform their
function: a periplasmic (E.coli) or a lipid-anchored
outer membrane protein called OMA (Neisseria
meningitidis and Haemophilus influenzae) and a
cytoplasmic membrane protein MPA2..
Length = 224
Score = 73.7 bits (181), Expect = 4e-14
Identities = 44/206 (21%), Positives = 90/206 (43%), Gaps = 18/206 (8%)
Query: 21 KPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDD 80
F L++V + +GE + L+ +G GKST+L + + PD G V + ++ + L
Sbjct: 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLG-- 90
Query: 81 KKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYA 140
GF + + ENI + G++ K ++ +++ + ++ +
Sbjct: 91 -------LGGGF-------NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI 136
Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200
+ S G + R+A A A +P I+L DE D ++ L+ L ++ G
Sbjct: 137 DLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLREL-LKQGKTV 195
Query: 201 LIATHNHDLASQM-DRQITIRDGMIA 225
++ +H+ ++ DR + + G I
Sbjct: 196 ILVSHDPSSIKRLCDRALVLEKGKIR 221
>gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 73.1 bits (179), Expect = 5e-14
Identities = 45/200 (22%), Positives = 91/200 (45%), Gaps = 18/200 (9%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAG-LLEVPDQGNVIIANQLCNKLSDDK 81
VL N++L +K G++VA+V SG GK+T+L I G ++ + ++ ++ +
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKV--EVPKNT 454
Query: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYAN 141
S L + + E I + + A ++ D Y
Sbjct: 455 VSALIPGEY-----------EPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLY-R 502
Query: 142 RRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAAL 201
R+ S++S G+++R + + +A +P ++L DE +LD TA +V + L +G+ +
Sbjct: 503 RKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562
Query: 202 IATHNHDLASQM--DRQITI 219
+ TH ++ + + D I +
Sbjct: 563 VVTHRPEVGNALRPDTLILV 582
>gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 72.2 bits (177), Expect = 1e-13
Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 17/187 (9%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGNVIIANQLCNKLSDDK 81
+ ++ +L GE + + P+G GK+T+L I AGLL PD G V + + + +
Sbjct: 15 RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR-PDAGEVYWQGE---PIQNVR 70
Query: 82 KSFLR-CSKIGFVYQEHRLLM--DFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQ 138
+S+ + +G H+ + + + +EN+ F Q G + A L+ + ++
Sbjct: 71 ESYHQALLYLG-----HQPGIKTELTALENLHFWQRFHGSGNAATIWEA---LAQVGLAG 122
Query: 139 YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGL 198
+ +S G+Q+RVA+ R + + + DEP LD K + + L G
Sbjct: 123 LEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALD-KEGVALLTALMAAHAAQGG 181
Query: 199 AALIATH 205
L+ TH
Sbjct: 182 IVLLTTH 188
>gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multiprotein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet..
Length = 200
Score = 69.7 bits (171), Expect = 6e-13
Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 39/205 (19%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEV-PDQGNVIIANQLCNKLSDDKK 82
+L+ V+L++KKGE+ AL+ P+G+GKST+ I G + +G ++ + L +++
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74
Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142
+ L I +Q P I G+ + D L Y++
Sbjct: 75 ARL---GIFLAFQY---------------PPEIPGV-------KNADFLRYVNEG----- 104
Query: 143 RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALI 202
SGGE++R I + + +P + + DEP LD+ + V ++ L G + LI
Sbjct: 105 ----FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKL-REEGKSVLI 159
Query: 203 ATHNHDLASQM--DRQITIRDGMIA 225
TH L + DR + DG I
Sbjct: 160 ITHYQRLLDYIKPDRVHVLYDGRIV 184
>gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 69.5 bits (170), Expect = 8e-13
Identities = 52/214 (24%), Positives = 101/214 (47%), Gaps = 15/214 (7%)
Query: 20 GKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSD 79
G+ P+L+ + +L+ GE + ++ PSG+GKST+ + + P G+V + +
Sbjct: 346 GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQW-- 403
Query: 80 DKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-------PQIIAGINHKTAYQRAMDLLS 132
D++ R IG++ Q+ L D ++ ENI ++I + A + L
Sbjct: 404 DREQLGR--HIGYLPQDVEL-FDGTIAENIARFGEEADPEKVIEAA--RLAGVHELILRL 458
Query: 133 YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYL 192
+ +SGG++QR+A+ RA+ P +++ DEP NLD + + + +
Sbjct: 459 PQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAA 518
Query: 193 VVRSGLAALIATHNHDLASQMDRQITIRDGMIAD 226
R G ++ H + +D+ + ++DG IA
Sbjct: 519 KAR-GGTVVVIAHRPSALASVDKILVLQDGRIAA 551
>gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster
assembly, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 251
Score = 67.5 bits (165), Expect = 3e-12
Identities = 55/230 (23%), Positives = 106/230 (46%), Gaps = 27/230 (11%)
Query: 12 VKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEV-PDQGNVII 69
+K + +V +L+ V+L++K+GE+ A++ P+G+GKST+ + I G + +G ++
Sbjct: 6 IKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILF 65
Query: 70 ANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAY----- 124
+ +LS D+++ I +Q ++ + N F + A +N +
Sbjct: 66 DGEDILELSPDERARA---GIFLAFQYP---VEIPGVTNSDF--LRAAMNARRGARGILP 117
Query: 125 ------QRAMDLLSYMDMSQYANRRSSD-ISGGEQQRVAICRAIANKPLIILADEPTGNL 177
+ +LL +D + R ++ SGGE++R I + + +P + + DEP L
Sbjct: 118 EFIKELKEKAELLG-LDEE-FLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGL 175
Query: 178 DLKTAQQVFSILKYLVVRSGLAALIATHNHDLA--SQMDRQITIRDGMIA 225
D+ + V + L G LI TH L + D+ + DG I
Sbjct: 176 DIDALKIVAEGINAL-REEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIV 224
>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
(PDR1-15), ABC superfamily [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 1391
Score = 67.2 bits (164), Expect = 4e-12
Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 18/209 (8%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
+L NV + K G + AL+ SG GK+T+L +AG G I + L + D+++
Sbjct: 806 LLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKT----GGYIEGDILISGFPKDQET 861
Query: 84 FLRCSKIGFVYQEHRLLMDFSVIENIIFP---QIIAGINHKTAYQRAMDLLSYMDMSQYA 140
F R G+V Q+ + +V E++ F ++ ++ + Y+ +++ +++ +YA
Sbjct: 862 FAR--VSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA 919
Query: 141 NR----RSSDISGGEQQRVAICRAIANKP-LIILADEPTGNLDLKTAQQVFSILKYLVVR 195
+ S +S +++R+ I + P I+ DEPT LD + A V L+ L
Sbjct: 920 DALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKL-AD 978
Query: 196 SGLAALIATH--NHDLASQMDRQITIRDG 222
+G L H + D+ D + ++ G
Sbjct: 979 TGQTILCTIHQPSIDIFEAFDELLLLKRG 1007
Score = 49.1 bits (117), Expect = 1e-06
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 19/199 (9%)
Query: 21 KPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSD 79
K +L+++ +K GE+ ++ P G+GK+T+L +AG L+ + + I
Sbjct: 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYN-----GH 180
Query: 80 DKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF------PQIIAGINHKTAYQRAM-DL-- 130
D K F+ + + ++ + +V E + F P + AM D
Sbjct: 181 DLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLL 240
Query: 131 ----LSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
L + + N +SGGE++RV+I + I+ DE T LD TA Q+
Sbjct: 241 KILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQII 300
Query: 187 SILKYLVVRSGLAALIATH 205
L+ L +G AL++
Sbjct: 301 KALRQLAHITGATALVSIL 319
>gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of
the bacterial CcmAB transporter. The CCM family is
involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperone
that binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE..
Length = 201
Score = 66.5 bits (162), Expect = 5e-12
Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 17/198 (8%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
+ + +L GE + + P+G+GK+T+L I L P G V++ + D
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIAR- 73
Query: 85 LRCSKIGFVYQEHRLLMD--FSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142
G +Y H + SV+EN+ F + + A+ + ++ + +R
Sbjct: 74 ------GLLYLGHAPGIKTTLSVLENLRF---WHADHSDEQVEEALA---RVGLNGFEDR 121
Query: 143 RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALI 202
+ +S G+Q+RVA+ R + + + + DEPT LD + + R G ++
Sbjct: 122 PVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGG-MVVL 180
Query: 203 ATHNHDLASQMDRQITIR 220
TH DL +
Sbjct: 181 TTH-QDLGLSEAGARELD 197
>gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily)
[General function prediction only].
Length = 614
Score = 65.4 bits (159), Expect = 1e-11
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 10/177 (5%)
Query: 15 SYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLC 74
S ++++V L L +G L+ P+G+GKST L EVP ++
Sbjct: 80 SLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSR 139
Query: 75 NKLSDDKKS----FLRCSK--IGFVYQEHRLLM---DFSVIENIIFPQIIAGINHKTAYQ 125
+K++ + Y L D E + + +++ T
Sbjct: 140 EIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEA 199
Query: 126 RAMDLLSYMD-MSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
+A +L + +S+ +++ D+SGG + R A+ RA+ KP ++L DEPT +LDL+
Sbjct: 200 KAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEA 256
Score = 58.0 bits (140), Expect = 2e-09
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 26/179 (14%)
Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQG 65
V+++QNV Y + + ++ + VALV P+G GKST+L + P G
Sbjct: 389 VIMVQNVSFGYS---DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIG 445
Query: 66 NVIIANQLCNKLSDDKKSFLRCSKIGFVYQEH---RLLMDFSVIENIIFPQIIAGINHKT 122
V + K+ Y +H +L +D S +E ++
Sbjct: 446 MVSRHSHN---------------KLP-RYNQHLAEQLDLDKSSLEFMM--PKFPDEKELE 487
Query: 123 AYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
+ + +Q S +S G+++RV R +P ++L DEPT +LD++T
Sbjct: 488 EMRSILGRFGLTGDAQ--VVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIET 544
>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity of more than 48%. The high degree of
evolutionary conservation suggests that RLI performs a
central role in archaeal and eukaryotic physiology..
Length = 246
Score = 64.9 bits (158), Expect = 2e-11
Identities = 39/192 (20%), Positives = 85/192 (44%), Gaps = 22/192 (11%)
Query: 32 SLKKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKI 90
S+ + E++ ++ P+G GK+T + + AG+L+ PD+G++ I +S
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLK-PDEGDIEIELD---TVS------------ 64
Query: 91 GFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGG 150
Y+ + D+ + I ++ ++ + + Q +R ++SGG
Sbjct: 65 ---YKPQYIKADYEGTVRDLLSSITKDFYTHPYFK--TEIAKPLQIEQILDREVPELSGG 119
Query: 151 EQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLA 210
E QRVAI ++ I L DEP+ LD++ +++ + A + H+ +
Sbjct: 120 ELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMI 179
Query: 211 SQMDRQITIRDG 222
+ ++ + +G
Sbjct: 180 DYLADRLIVFEG 191
>gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 64.8 bits (158), Expect = 2e-11
Identities = 41/190 (21%), Positives = 85/190 (44%), Gaps = 29/190 (15%)
Query: 32 SLKKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKI 90
+ GE++ ++ P+G GK+T + + AG+++ PD+G+ +
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIK-PDEGSEE--------------------DL 401
Query: 91 GFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGG 150
Y+ + D+ + I + ++ +++ +++ R ++SGG
Sbjct: 402 KVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFK--TEIVKPLNLEDLLERPVDELSGG 459
Query: 151 EQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHN---H 207
E QRVAI A++ + + L DEP+ LD++ V +++ + + AL+ H+
Sbjct: 460 ELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMI 519
Query: 208 DLASQMDRQI 217
D S DR I
Sbjct: 520 DYVS--DRLI 527
Score = 52.9 bits (127), Expect = 7e-08
Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 22/188 (11%)
Query: 34 KKGEIVALVSPSGTGKSTILHI-AGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKI-- 90
+ G++V ++ P+G GKST L I AG L P+ G + D+ R +++
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGEL-KPNLGRY---EDPPSW--DEVIKRFRGTELQN 151
Query: 91 ---GFVYQEHRLLMDFSVIENIIFPQIIAG-----INHKTAYQRAMDLLSYMDMSQYANR 142
E R + ++ I P+++ G + + +++ + + +R
Sbjct: 152 YFKKLYEGELRAVHKPQYVDLI--PKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDR 209
Query: 143 RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALI 202
S++SGGE QRVAI A+ + DEP+ LD++ +++ L G ++
Sbjct: 210 DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIREL-AEDGKYVIV 268
Query: 203 ATHNHDLA 210
HDLA
Sbjct: 269 V--EHDLA 274
>gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions..
Length = 144
Score = 64.7 bits (158), Expect = 2e-11
Identities = 43/217 (19%), Positives = 82/217 (37%), Gaps = 75/217 (34%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
+ L+N+ +Y +L+++ L++ G+ + LV +G GKST+L +
Sbjct: 1 IELENLSKTY----GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKL----------- 45
Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
+ +L D+ S + Y F Q+
Sbjct: 46 ------IAGELEPDEGIVTWGSTVKIGY----------------FEQL------------ 71
Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
SGGE+ R+A+ + + P ++L DEPT +LDL++ + +
Sbjct: 72 ---------------------SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALE 110
Query: 187 SILKYLVVRSGLAALIATHNHDLASQM-DRQITIRDG 222
LK G ++ +H+ Q+ + I + DG
Sbjct: 111 EALKEY---PG-TVILVSHDRYFLDQVATKIIELEDG 143
>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 63.7 bits (155), Expect = 3e-11
Identities = 44/201 (21%), Positives = 85/201 (42%), Gaps = 22/201 (10%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82
+L ++ ++ GE + + SG GK+++L +AGL G + +
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPW-GSGRISMP------------ 453
Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ--RAMDLLSYMDMSQYA 140
S + F+ Q L ++ E + +P + + L +
Sbjct: 454 ---ADSALLFLPQ-RPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE 509
Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200
+R +SGGEQQR+A R + +KP + DE T LD +T +++ +LK + + + +
Sbjct: 510 DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVIS 569
Query: 201 LIATHNHDLASQMDRQITIRD 221
+ H L + RQ+ + D
Sbjct: 570 V--GHRPTLWNFHSRQLELLD 588
>gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1. The sulfonylurea receptor
SUR is an ATP transporter of the ABCC/MRP family with
tandem ATPase binding domains. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity..
Length = 218
Score = 64.0 bits (155), Expect = 3e-11
Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 12/220 (5%)
Query: 12 VKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD-QGNVIIA 70
V + Y G L N+++ + G++ +V G GKS++L +A L E+ +G V +
Sbjct: 3 VTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLL-LAILGEMQTLEGKVHWS 61
Query: 71 NQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIF-----PQIIAGINHKTAYQ 125
N+ ++ S + + + Q+ LL + +V ENI F Q + + Q
Sbjct: 62 NKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSPFNKQRYKAVTDACSLQ 120
Query: 126 RAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQV 185
+DLL + D ++ R ++SGG++QR+ + RA+ I+ D+P LD+ + +
Sbjct: 121 PDIDLLPFGDQTEIG-ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHL 179
Query: 186 FS--ILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGM 223
ILK+L L+ TH D I ++DG
Sbjct: 180 MQEGILKFLQDDKRTLVLV-THKLQYLPHADWIIAMKDGS 218
>gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 221
Score = 63.2 bits (154), Expect = 6e-11
Identities = 46/189 (24%), Positives = 89/189 (47%), Gaps = 17/189 (8%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNV 67
+NV YR P VL+N+ S+K GE V +V +G+GKS++L + L+E G++
Sbjct: 5 FKNVSLRYRPNLPP--VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE-LSSGSI 61
Query: 68 IIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENI-IFPQ-----IIAGINHK 121
+I +K+ LR S+I + Q+ +L ++ N+ F + + +
Sbjct: 62 LIDGVDISKIGLHD---LR-SRISIIPQD-PVLFSGTIRSNLDPFGEYSDEELWQALERV 116
Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
+ L +D ++S G++Q + + RA+ K I++ DE T ++D +T
Sbjct: 117 GLKEFVESLPGGLDT--VVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174
Query: 182 AQQVFSILK 190
+ ++
Sbjct: 175 DALIQKTIR 183
>gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like
(PDR) family of ATP-binding cassette (ABC) transporters.
PDR is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 192
Score = 62.9 bits (153), Expect = 7e-11
Identities = 56/225 (24%), Positives = 95/225 (42%), Gaps = 50/225 (22%)
Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHI------AGLL 59
VL +N+ ++ G +L N+ +K G + AL+ SG GK+T+L + AG++
Sbjct: 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI 62
Query: 60 EVPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGIN 119
G ++I + K+F R G+V Q+ + +V E + F ++ G+
Sbjct: 63 T----GEILINGRP------LDKNFQR--STGYVEQQDVHSPNLTVREALRFSALLRGL- 109
Query: 120 HKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDL 179
+ QR +R+ I +A KP I+ DEPT LD
Sbjct: 110 --SVEQR--------------------------KRLTIGVELAAKPSILFLDEPTSGLDS 141
Query: 180 KTAQQVFSILKYLVVRSGLAALIATH--NHDLASQMDRQITIRDG 222
+ A + LK L SG A L H + + + DR + ++ G
Sbjct: 142 QAAYNIVRFLKKL-ADSGQAILCTIHQPSASIFEKFDRLLLLKRG 185
>gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 61.8 bits (150), Expect = 2e-10
Identities = 47/226 (20%), Positives = 103/226 (45%), Gaps = 18/226 (7%)
Query: 3 SAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVP 62
+ +L L V S+ F L ++ S+ GE+ L+ P+G GK+T++ + P
Sbjct: 2 NPIILYLDGVSVSF----GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP 57
Query: 63 DQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENI---------IFPQ 113
+G V+ L+ + + + IG +Q+ + + +V EN+ +F
Sbjct: 58 QEGEVLFDGDT--DLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFAS 115
Query: 114 IIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEP 173
+ A + + +R +LL+ + + +R ++ +S G++Q + I +A P ++L DEP
Sbjct: 116 LFARLRAEER-RRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEP 174
Query: 174 TGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITI 219
+ ++ +LK L + L+ H+ ++ ++T+
Sbjct: 175 VAGMTDAETEKTAELLKSL--AGKHSILVVEHDMGFVREIADKVTV 218
>gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 60.0 bits (145), Expect = 5e-10
Identities = 47/204 (23%), Positives = 99/204 (48%), Gaps = 10/204 (4%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDK 81
++ V +L++G+ +A++ +G+GKST+ +AG++E P G ++I + L
Sbjct: 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-PTSGEILINDHP---LHFGD 81
Query: 82 KSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDM----S 137
SF R +I ++Q+ ++ + I + QR + + M
Sbjct: 82 YSF-RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLP 140
Query: 138 QYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSG 197
+AN ++ G++QRVA+ RA+ +P II+ADE +LD+ Q+ +++ L + G
Sbjct: 141 DHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQG 200
Query: 198 LAALIATHNHDLASQMDRQITIRD 221
++ + T + + + Q+ +
Sbjct: 201 ISYIYVTQHIGMIKHISDQVLVMH 224
>gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR)
family of ATP-binding cassette (ABC) transporters. PDR
is a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide-binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 202
Score = 59.8 bits (145), Expect = 6e-10
Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 32/223 (14%)
Query: 5 EVLLLQNVKHSYRQVGKP-FPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVP 62
L G+ P+L++ +K GE+V ++ G+G ST+L +A E
Sbjct: 1 ASTLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTE-- 58
Query: 63 DQGNVIIANQLCNKLSDDKKSFLRC-SKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHK 121
GNV + + K+ + +I +V +E +V E + F G
Sbjct: 59 --GNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG---- 112
Query: 122 TAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
N ISGGE++RV+I A+ ++ ++ D T LD T
Sbjct: 113 -------------------NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST 153
Query: 182 AQQVFSILKYLVVRSGLAALIATH--NHDLASQMDRQITIRDG 222
A ++ ++ + ++ + + ++ D+ + + +G
Sbjct: 154 ALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEG 196
>gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits, or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 282
Score = 58.9 bits (142), Expect = 1e-09
Identities = 46/171 (26%), Positives = 91/171 (53%), Gaps = 30/171 (17%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82
PVL+N++L ++KGE++A+ +G+GK+++L I G LE P +G + + ++
Sbjct: 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE-PSEGKIKHSGRI--------- 100
Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142
SF S+ ++ M ++ ENIIF +K+ + A L D++++ +
Sbjct: 101 SF--SSQFSWI-------MPGTIKENIIFGVSYDEYRYKSVVK-ACQLEE--DITKFPEK 148
Query: 143 RSS-------DISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
++ +SGG++ R+++ RA+ + L D P G LD+ T +++F
Sbjct: 149 DNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIF 199
>gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette
transporter (Pat) is involved in the import of very
long-chain fatty acids (VLCFA) into the peroxisome. The
peroxisomal membrane forms a permeability barrier for a
wide variety of metabolites required for and formed
during fatty acid beta-oxidation. To communicate with
the cytoplasm and mitochondria, peroxisomes need
dedicated proteins to transport such hydrophilic
molecules across their membranes. X-linked
adrenoleukodystrophy (X-ALD) is caused by mutations in
the ALD gene, which encodes ALDP (adrenoleukodystrophy
protein ), a peroxisomal integral membrane protein that
is a member of the ATP-binding cassette (ABC)
transporter protein family. The disease is
characterized by a striking and unpredictable variation
in phenotypic expression. Phenotypes include the
rapidly progressive childhood cerebral form (CCALD), the
milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic)..
Length = 166
Score = 58.2 bits (141), Expect = 2e-09
Identities = 45/198 (22%), Positives = 79/198 (39%), Gaps = 54/198 (27%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVIIANQLCNKLSDDKK 82
+L+++ +K G+ + + PSGTGKS++ +AGL G + +
Sbjct: 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGM------------- 60
Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142
+ F+ Q L ++ E +I+P D+LS
Sbjct: 61 --PEGEDLLFLPQ-RPYLPLGTLREQLIYPW--------------DDVLS---------- 93
Query: 143 RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALI 202
GGEQQR+A R + +KP + DE T LD ++ +++ +LK +I
Sbjct: 94 ------GGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK-----ELGITVI 142
Query: 203 A-THNHDLASQMDRQITI 219
+ H L DR + +
Sbjct: 143 SVGHRPSLWKFHDRVLDL 160
>gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI s are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLIs have an N-terminal
Fe-S domain and two nucleotide binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 255
Score = 53.7 bits (129), Expect = 4e-08
Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 26/190 (13%)
Query: 34 KKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLS-DDKKSFLRCSKIGF 92
++G+++ LV P+G GKST L I P+ G + D+ R S++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGK------FDDPPDWDEILDEFRGSEL-- 75
Query: 93 VYQEHRLLMDFSVIENIIFPQ------------IIAGINHKTAYQRAMDLLSYMDMSQYA 140
Q + + ++ I+ PQ + + K + +L+ +++
Sbjct: 76 --QNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVL 133
Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200
+R +SGGE QRVAI A+A DEP+ LD+K +++ L
Sbjct: 134 DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIREL-AEDDNYV 192
Query: 201 LIATHNHDLA 210
L+ HDLA
Sbjct: 193 LVV--EHDLA 200
>gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA
processing and modification].
Length = 592
Score = 52.2 bits (125), Expect = 1e-07
Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 14/173 (8%)
Query: 34 KKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFV 93
+ G+++ LV +G GKST L I + P+ G L+ + S L+ +
Sbjct: 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKIL 157
Query: 94 YQEHRLLMDFSVIENIIFPQIIAG-----INHKTAYQRAMDLLSYMDMSQYANRRSSDIS 148
+ ++ ++ I P+ + G ++ K ++ +D++ +R +S
Sbjct: 158 EDNLKAIIKPQYVDQI--PRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLS 215
Query: 149 GGEQQRVAICRAIANKPLIILADEPTGNLD----LKTAQQVFSIL---KYLVV 194
GGE QR AI K + + DEP+ LD LK A + S++ +Y++V
Sbjct: 216 GGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIV 268
Score = 46.4 bits (110), Expect = 6e-06
Identities = 46/209 (22%), Positives = 88/209 (42%), Gaps = 40/209 (19%)
Query: 26 LENVHLSLKKG-----EIVALVSPSGTGKSTILH-IAGLLEVPDQG------NVIIANQL 73
+ + L +K G EI+ ++ +GTGK+T + +AG L+ PD+G NV Q
Sbjct: 352 VGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK-PDEGGEIPVLNVSYKPQK 410
Query: 74 CNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSY 133
+ + L +KI Y + + D V++ + II
Sbjct: 411 ISPKREGTVRQLLHTKIRDAYMHPQFVND--VMKPLQIENII------------------ 450
Query: 134 MDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193
++ +SGGE QRVA+ + + L DEP+ LD + ++K +
Sbjct: 451 -------DQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFI 503
Query: 194 VRSGLAALIATHNHDLASQMDRQITIRDG 222
+ + A + H+ +A+ + ++ + +G
Sbjct: 504 LHAKKTAFVVEHDFIMATYLADRVIVFEG 532
>gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC
superfamily) [Translation, ribosomal structure and
biogenesis].
Length = 807
Score = 52.0 bits (124), Expect = 1e-07
Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 18/170 (10%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAG-LLEVPDQGNVIIANQLCNKLSDDK- 81
+ N L++ G LV P+G GK+T+L HIA L +P +V++ Q ++D
Sbjct: 279 LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQ--EVVADSTS 336
Query: 82 --KSFLRCSK--IGFVYQEHRLLMDF-----SVIENI--IFPQIIAGINHKTAYQRAMDL 130
+ L+ K + + +E +L+ + E + + ++ A I +A RA +
Sbjct: 337 AIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA-IGADSAEARARRI 395
Query: 131 LSYMDMS-QYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDL 179
L+ + S + R ++ SGG + RV++ RA+ +P +++ DEPT +LDL
Sbjct: 396 LAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDL 445
Score = 51.6 bits (123), Expect = 1e-07
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 30/180 (16%)
Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQ 64
VL L +V Y G+ P+ + + + +A+V P+G GKST+L + G L+ P+
Sbjct: 586 VLGLHDVTFGYP--GQK-PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-PND 641
Query: 65 GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEH--RLLMDFSVIENIIFPQIIAGINHKT 122
G + ++L +IG+ Q L + + +E + Q +
Sbjct: 642 GELRKNHRL---------------RIGWFDQHANEALNGEETPVE---YLQRKFNLP--- 680
Query: 123 AYQRAMDLLSYMDMSQYANR-RSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181
YQ A L ++ +A+ + D+SGG++ RVA+ P +++ DEPT NLD+++
Sbjct: 681 -YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIES 739
>gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 51.1 bits (122), Expect = 2e-07
Identities = 49/221 (22%), Positives = 101/221 (45%), Gaps = 14/221 (6%)
Query: 7 LLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN 66
L L+NV+ +Y+ F V ++L++K+GE+V L+ +G+GKST+ + L P G
Sbjct: 323 LELRNVRFAYQDNA--FHV-GPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGE 379
Query: 67 VIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQR 126
+++ + +S ++ R V+ ++ L E PQ+I +
Sbjct: 380 ILLDGKP---VSAEQLEDYR-KLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELA- 434
Query: 127 AMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVF 186
S D + +S G+++R+A+ A+ + I++ DE + D ++ +
Sbjct: 435 --HKTSLND----GRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFY 488
Query: 187 SILKYLVVRSGLAALIATHNHDLASQMDRQITIRDGMIADL 227
+L L+ G +H+ DR + +R+G +++L
Sbjct: 489 QVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529
>gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters
with duplicated ATPase domains/Translation elongation
factor EF-3b [Amino acid transport and metabolism,
Translation, ribosomal structure and biogenesis].
Length = 582
Score = 51.1 bits (122), Expect = 3e-07
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 30/162 (18%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTIL------HIAGLLEVPDQGNVIIANQLCNKLS 78
+L +L+L +G LV +G GKST+L ++G + S
Sbjct: 95 LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLES 154
Query: 79 DDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQ 138
D ++ F+ +E +++AG+ + Y + + L + Q
Sbjct: 155 D-------TERLDFLAEE---------------KELLAGLTLEEIYDKILAGLGFTPEMQ 192
Query: 139 YANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLK 180
+ + +SGG + R+A+ RA+ KP ++L DEPT +LD+
Sbjct: 193 --LQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVV 232
Score = 47.6 bits (113), Expect = 3e-06
Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 25/224 (11%)
Query: 3 SAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVP 62
S L + V Y + + + L + ++ V +G GKST+L I P
Sbjct: 359 SPPNLRISYVAFEY--TPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP 416
Query: 63 DQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKT 122
+G V +L +I + Q H +D +V + G +
Sbjct: 417 TRGIVGRHPRL---------------RIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEE 461
Query: 123 AYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTA 182
+R + + A + + +SGG++ RVA N P +++ DEPT +LD +
Sbjct: 462 -IRRHLGSFGLS--GELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDS- 517
Query: 183 QQVFSILKYLVVRSGLAALIATHNHDLASQMDRQI-TIRDGMIA 225
+ ++ K L +G ++ +H+ + S + +++ + DG +
Sbjct: 518 --LGALAKALKNFNG-GVVLVSHDEEFISSLCKELWVVEDGKVT 558
>gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase
component/CCR4 associated factor [General function
prediction only, Transcription].
Length = 291
Score = 49.6 bits (118), Expect = 8e-07
Identities = 53/216 (24%), Positives = 87/216 (40%), Gaps = 26/216 (12%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
P+ + +L L G LV +G GK+T+L I + G V + S +
Sbjct: 28 PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQV-----LGRSAFHDT 82
Query: 84 FLRCS-----------KIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLS 132
L S K + E L D S E++IF + G + +R L+
Sbjct: 83 SLESSGDLSYLGGEWSKTVGIAGEVPLQGDISA-EHMIFG--VGGDD----PERREKLID 135
Query: 133 YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYL 192
+D+ R +S G+++RV IC + ++L DE T +LD+ + LK
Sbjct: 136 ILDID--LRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEE 193
Query: 193 VVRSGLAALIATHNHD-LASQMDRQITIRDGMIADL 227
+ G + ATH D L + + I+ G + D
Sbjct: 194 CEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDN 229
>gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide
excision repair in eubacteria is a process that repairs
DNA damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins, and UvrB having one ATP binding
site that is structurally related to that of helicases..
Length = 176
Score = 47.2 bits (112), Expect = 4e-06
Identities = 43/196 (21%), Positives = 76/196 (38%), Gaps = 47/196 (23%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFL 85
L+N+ +S+ +V + SG+GKST++ N + +L F
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV------------NEGLYASGKARLISFLPKFS 58
Query: 86 RCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSS 145
R +K+ F+ Q L I G+ + T ++ S
Sbjct: 59 R-NKLIFIDQLQFL--------------IDVGLGYLTL-----------------GQKLS 86
Query: 146 DISGGEQQRVAICRAIAN--KPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIA 203
+SGGE QRV + + + + + DEP+ L + Q+ ++K L + G ++
Sbjct: 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGL-IDLGNTVILI 145
Query: 204 THNHDLASQMDRQITI 219
HN D+ S D I
Sbjct: 146 EHNLDVLSSADWIIDF 161
>gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 46.5 bits (110), Expect = 6e-06
Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 30/214 (14%)
Query: 6 VLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL-HIAGLLEVPDQ 64
++ L +V S R L + ++ GEI+ LV P+G GKST+L +AG+
Sbjct: 3 LMQLNDVAESTR--------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT--SGS 52
Query: 65 GNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAY 124
G++ A Q S + + R ++ Q+ V + Q KT
Sbjct: 53 GSIQFAGQPLEAWSATELARHR----AYLSQQQTPPFAMPVWHYLTLHQ-----PDKTRT 103
Query: 125 QRAMDLLSYMDMSQYANRRSSDISGGEQQRV---AICRAI---AN-KPLIILADEPTGNL 177
+ D+ + + R ++ +SGGE QRV A+ I AN ++L DEP +L
Sbjct: 104 ELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSL 163
Query: 178 DLKTAQQVFSILKYLVVRSGLAALIATH--NHDL 209
D+ + +L L + GLA ++++H NH L
Sbjct: 164 DVAQQSALDRLLSAL-CQQGLAIVMSSHDLNHTL 196
>gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 45.8 bits (109), Expect = 1e-05
Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 57/215 (26%)
Query: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAG-----LLEVPDQGNVIIANQLCNK 76
+L+ ++LS+ KGEI A++ P+G+GKST+ IAG +LE G+++ +
Sbjct: 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILE----GDILFKGESILD 75
Query: 77 LSDDKKS---------------------FLRCSKIGFVYQEHRLLMDFSVIENIIFPQII 115
L ++++ FLR Y R ++ + F +II
Sbjct: 76 LEPEERAHLGIFLAFQYPIEIPGVSNADFLR-----LAYNSKRKFQGLPELDPLEFLEII 130
Query: 116 AGINHKTAYQRAMDLLSYMDMSQ-YANRRSSD-ISGGEQQRVAICRAIANKPLIILADEP 173
+ L + M + +R ++ SGGE++R I + + + DE
Sbjct: 131 ------------NEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDET 178
Query: 174 TGNLD---LKTAQQVFSILKYLVVRSGLAALIATH 205
LD LK + + L S + ++ TH
Sbjct: 179 DSGLDIDALKIIAEGINKLM----TSENSIILITH 209
>gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA
transporter, ABC superfamily [Lipid transport and
metabolism].
Length = 728
Score = 45.0 bits (106), Expect = 2e-05
Identities = 43/196 (21%), Positives = 77/196 (39%), Gaps = 32/196 (16%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
++ + ++ G + + P+G GKS++ I G L G + I
Sbjct: 497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP-------------- 542
Query: 85 LRCSKIGFVYQEHRLLMDFSVI-ENIIFPQIIAGINHK-TAYQRAMDLLSYMDMSQYANR 142
R + I ++ Q R M + + II+P + K Q +L + + R
Sbjct: 543 -RPNNIFYIPQ--RPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQR 599
Query: 143 RS--------SDI-SGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLV 193
D+ SGGE+QR+ + R ++P L DE T + + ++F K
Sbjct: 600 EGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK--- 656
Query: 194 VRSGLAALIATHNHDL 209
+G++ L TH L
Sbjct: 657 -DAGISLLSITHRPSL 671
>gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (mulrtidrug
resisitance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminas,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate..
Length = 207
Score = 44.5 bits (105), Expect = 2e-05
Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 31/208 (14%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTI-LHIAGLLEVPDQGNVIIANQLCNKLSDDKK 82
PVL+NV +K GE + +V +G GKST+ L + LE ++G + I + + +
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE-AEEGKIEIDGIDISTIPLED- 79
Query: 83 SFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANR 142
LR S + + Q+ L I + + P + Y D Y
Sbjct: 80 --LR-SSLTIIPQDPTLFS--GTIRSNLDP-----------FDE------YSDEEIYGAL 117
Query: 143 RSS----DISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGL 198
R S ++S G++Q + + RA+ +P +++ DE T ++D T + ++ +
Sbjct: 118 RVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF--TNS 175
Query: 199 AALIATHNHDLASQMDRQITIRDGMIAD 226
L H D+ + + G + +
Sbjct: 176 TILTIAHRLRTIIDYDKILVMDAGEVKE 203
>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep ATP-dependent
reaction that requires the UvrA, UvrB, and UvrC
proteins. Both UvrA and UvrB are ATPases, with UvrA
having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 261
Score = 44.0 bits (104), Expect = 3e-05
Identities = 51/236 (21%), Positives = 96/236 (40%), Gaps = 54/236 (22%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILH------IAGLL----EVPDQGNVIIANQLCN 75
L+N+ + + G + + SG+GKS++++ +A L E P + I + +
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHID 70
Query: 76 KLSD---------------------DKKSFLRCSKI-GFVYQEHRL-----------LMD 102
K+ D+ L C G Y L ++D
Sbjct: 71 KVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLD 130
Query: 103 FSVIENIIFPQIIAGINHKTAYQRAMDL-LSYMDMSQYANRRSSDISGGEQQRVAICRAI 161
+V E + F + I I K Q D+ L Y+ + Q ++ +SGGE QR+ + + +
Sbjct: 131 MTVEEALEFFENIPKIARKL--QTLCDVGLGYIKLGQ----PATTLSGGEAQRIKLAKEL 184
Query: 162 ANK---PLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMD 214
+ + + + DEPT L +++ +L+ LV + G ++ HN D+ D
Sbjct: 185 SKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVIEHNLDVIKCAD 239
>gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor
(RLI) is a key enzyme in ribosomal biogenesis, formation
of translation preinitiation complexes, and assembly of
HIV capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 177
Score = 42.7 bits (100), Expect = 9e-05
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 111 FPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILA 170
+I+AG D ++ + QY D+SGGE QRVAI A+ L
Sbjct: 41 AVKILAGQLIPNGDNDEWDGITPVYKPQYI-----DLSGGELQRVAIAAALLRNATFYLF 95
Query: 171 DEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITIRDG 222
DEP+ LD++ ++ L AL+ H+ + + +I + +G
Sbjct: 96 DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEG 147
Score = 35.7 bits (82), Expect = 0.009
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 33 LKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNV 67
+K+GE++ +V P+GTGK+T + I +P+ N
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND 56
>gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC
superfamily (involved in peroxisome organization and
biogenesis) [Lipid transport and metabolism, General
function prediction only].
Length = 659
Score = 41.1 bits (96), Expect = 2e-04
Identities = 35/178 (19%), Positives = 70/178 (39%), Gaps = 25/178 (14%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
++EN+ L + G+ + + PSG GK+++L + G L G + K
Sbjct: 450 LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKL-------------TKPT 496
Query: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAY-QRAMDLLSYMDMSQYANRR 143
K F + + ++ + +I+P ++ K+A + + +L + + R
Sbjct: 497 DGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLERE 556
Query: 144 -----------SSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILK 190
+S GEQQR+A R +KP + DE T + ++ +
Sbjct: 557 GGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCR 614
>gnl|CDD|29988 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3'
helicases. Helicases couple NTP hydrolysis to the
unwinding of nucleic acid duplexes into their component
strands..
Length = 271
Score = 40.3 bits (94), Expect = 4e-04
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 15 SYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL 53
S +V PFPVL + L+KGE++ L + +G GK+T L
Sbjct: 9 SNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFL 47
>gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterised by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins..
Length = 162
Score = 40.3 bits (94), Expect = 5e-04
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 147 ISGGEQQRVAICRAIAN-----KPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAAL 201
+SGGE++ A+ +A +PL IL DE LD + Q + + +V G +
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYIL-DEIDRGLDPRDGQALAEAILEHLV-KGAQVI 135
Query: 202 IATHNHDLASQMDRQITIR 220
+ TH +LA D+ I I+
Sbjct: 136 VITHLPELAELADKLIHIK 154
>gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are
implicated in the metabolism of DNA ends. They cleave
ends sealed by hairpin structures and are thought to
play a role in removing protein bound to DNA termini..
Length = 213
Score = 40.2 bits (94), Expect = 5e-04
Identities = 36/201 (17%), Positives = 73/201 (36%), Gaps = 30/201 (14%)
Query: 32 SLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKIG 91
L + + P+G GKSTIL I L K + S
Sbjct: 24 GLDNNGLFLICGPTGAGKSTILD-------------AITYALYGKTPRYGRQENLRSVFA 70
Query: 92 FVYQEHRLLMDFSVIENIIFPQII--AGINHKTAYQRAMDLLSYMDMSQYANRRSSDISG 149
+ F + ++ G+++ + R + LL + ++ R S +SG
Sbjct: 71 PGEDTAEVSFTFQL--GGKKYRVERSRGLDYDQ-FTRIV-LLPQGEFDRFLARPVSTLSG 126
Query: 150 GEQQRVAICRAIANKPLI----------ILADEPTGNLDLKTAQQVFSILKYLVVRSGLA 199
GE ++ A+A ++ + DE G LD + + V + L+ L+
Sbjct: 127 GETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALE-LIRTENRM 185
Query: 200 ALIATHNHDLASQMDRQITIR 220
+ +H +L ++ +++ +
Sbjct: 186 VGVISHVEELKERIPQRLEVI 206
>gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 275
Score = 39.6 bits (92), Expect = 7e-04
Identities = 46/204 (22%), Positives = 94/204 (46%), Gaps = 12/204 (5%)
Query: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDK--K 82
VLEN+ S+ G+ V L+ +G+GKST+L A L + +G++ I N + K K
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLS-AFLRLLNTEGDIQIDGVSWNSVPLQKWRK 77
Query: 83 SFLRCSKIGFVYQ-EHRLLMD-FSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYA 140
+F + F++ R +D + + ++ + K+ ++ L ++ +
Sbjct: 78 AFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDG-- 135
Query: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200
+S G +Q + + R++ +K I+L DEP+ +LD T Q + LK +
Sbjct: 136 ---GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTV 190
Query: 201 LIATHNHDLASQMDRQITIRDGMI 224
+++ H + + R + I + +
Sbjct: 191 ILSEHRIEAMLECQRFLVIEENKV 214
>gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 39.3 bits (91), Expect = 9e-04
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 139 YANRRSSDISGGEQQRVAICRAIA---------NKPLIILADEPTGNLDLKTAQQVFSIL 189
R +SGGE+ ++ +A L+ L DEP G LD + +++ IL
Sbjct: 808 GEVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFL-DEPFGTLDEERLEKLAEIL 866
Query: 190 KYLVVRSGLAALIATHNHDLASQMDRQITIR 220
+ L + G +I +H +L + D +I ++
Sbjct: 867 EEL-LSDGRQIIIISHVEELKERADVRIRVK 896
>gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep ATP-dependent
reaction that requires the UvrA, UvrB, and UvrC
proteins. Both UvrA and UvrB are ATPases, with UvrA
having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 226
Score = 38.2 bits (89), Expect = 0.002
Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 43/219 (19%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTIL---------------------HIAGLLEVPDQ 64
L+NV + + + ++V + SG+GKS++ G ++ PD
Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDV 70
Query: 65 GNVIIANQLCNKLSDDKKSFLRC--SKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKT 122
++ L ++ D+K+ R S +G V + + L ++F ++ GI +
Sbjct: 71 DSI---EGLSPAIAIDQKTTSRNPRSTVGTVTEIYDYL-------RLLFARV--GIRERL 118
Query: 123 AYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANK--PLIILADEPTGNLDLK 180
+ + L Y+ +S R + +SGGE QR+ + I + ++ + DEP+ L +
Sbjct: 119 GFLVDVGL-GYLTLS----RSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPR 173
Query: 181 TAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQITI 219
++ LK L G L+ H+ D D I I
Sbjct: 174 DNDRLIETLKRL-RDLGNTVLVVEHDEDTIRAADHVIDI 211
>gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 36.3 bits (84), Expect = 0.008
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 13/119 (10%)
Query: 101 MDFSVIENIIFPQIIAGINHKTAYQRAMDL-LSYMDMSQYANRRSSDISGGEQQRVAICR 159
+D +V E + F + I I K Q +D+ L Y+ + Q A + +SGGE QRV + +
Sbjct: 782 LDMTVEEALEFFEAIPKIARKL--QTLVDVGLGYIKLGQPA----TTLSGGEAQRVKLAK 835
Query: 160 AIA----NKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMD 214
++ K L IL DEPT L +++ +L L V G ++ HN D+ D
Sbjct: 836 ELSKRSTGKTLYIL-DEPTTGLHFDDIKKLLEVLHRL-VDKGNTVIVIEHNLDVIKTAD 892
Score = 32.1 bits (73), Expect = 0.12
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 101 MDFSVIENIIFPQIIAGINHKTAYQRAMDL-LSYMDMSQYANRRSSDISGGEQQRVAICR 159
+ S E I I+ I K +D+ L Y+ +S R + +SGGE QR+ +
Sbjct: 441 LKLSEKEKKIAEPILKEI--KERLGFLVDVGLGYLTLS----RSAGTLSGGEAQRIRLAT 494
Query: 160 AIANK---PLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDRQ 216
I + L +L DEP+ L + +++ LK L G ++ H+ D D
Sbjct: 495 QIGSGLTGVLYVL-DEPSIGLHQRDNERLIETLKRL-RDLGNTVIVVEHDEDTIRAADHI 552
Query: 217 ITI 219
I I
Sbjct: 553 IDI 555
Score = 29.8 bits (67), Expect = 0.59
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTI 52
L+N+ L + + ++V + SG+GKS++
Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSL 42
Score = 26.3 bits (58), Expect = 7.6
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILH 54
L+N+ + + G + SG+GKST+++
Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTLIN 645
>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to
the ATP-binding cassette of ABC transporters, but are
not associated with membrane-spanning domains. The
conserved ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence..
Length = 204
Score = 34.8 bits (80), Expect = 0.020
Identities = 35/193 (18%), Positives = 74/193 (38%), Gaps = 30/193 (15%)
Query: 38 IVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKL--SDDKKSFLRCSKIGFVYQ 95
+ +V +G GK+TI+ + KL + ++ ++ + +
Sbjct: 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGK 83
Query: 96 EHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQ-- 153
++ + +++EN+IF +Q + +DM SGGE+
Sbjct: 84 KYTITRSLAILENVIF-----------CHQGESNWP-LLDMRGR-------CSGGEKVLA 124
Query: 154 ----RVAICRAI-ANKPLIILADEPTGNLDL-KTAQQVFSILKYLVVRSGLAALIATHNH 207
R+A+ +N ++ L DEPT NLD + + I++ + ++ TH+
Sbjct: 125 SLIIRLALAETFGSNCGILAL-DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE 183
Query: 208 DLASQMDRQITIR 220
+L D +
Sbjct: 184 ELVDAADHIYRVE 196
>gnl|CDD|37584 KOG2373, KOG2373, KOG2373, Predicted mitochondrial DNA helicase
twinkle [Replication, recombination and repair].
Length = 514
Score = 34.2 bits (78), Expect = 0.033
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 9 LQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTIL 53
L N + K FPVL + GE+ L P+G+GK+T L
Sbjct: 246 LLNTERVVGFQWKRFPVLNKYLKGHRPGELTVLTGPTGSGKTTFL 290
>gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 33.3 bits (77), Expect = 0.058
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 16 YRQVGKPFPVL----ENVHLSLK---KGEIVALVSPSGTGKSTIL 53
Y +G V+ LK KG+ L SG GKST+L
Sbjct: 8 YEAIGYEVLVVSAKTGEGIEELKPLLKGKTSVLAGQSGVGKSTLL 52
>gnl|CDD|29991 cd01125, repA, Hexameric Replicative Helicase RepA. RepA is
encoded by a plasmid, which is found in most Gram
negative bacteria. RepA is a 5'-3' DNA helicase which
can utilize ATP, GTP and CTP to a lesser extent..
Length = 239
Score = 31.9 bits (72), Expect = 0.16
Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 26/121 (21%)
Query: 36 GEIVALVSPSGTGKSTI-----LHIA-------GLLEVPDQGNVIIANQLCNKLSDDKKS 83
G + ALV+P GTGKS++ L +A G L+V + G V+ + D ++
Sbjct: 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS-----AEDPREE 55
Query: 84 FLR-----CSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQ 138
R + RL +D I+ I IA ++ + + +
Sbjct: 56 IHRRLEAILQHLEPDDAGDRLFIDSGRIQPI----SIAREGRIIVVPEFERIIEQLLIRR 111
Query: 139 Y 139
Sbjct: 112 I 112
>gnl|CDD|32462 COG2308, COG2308, Uncharacterized conserved protein [Function
unknown].
Length = 488
Score = 31.8 bits (72), Expect = 0.19
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 53 LHIAGLLEVPDQGNVIIANQLCNKLSDDK 81
L + GL+E GNV IAN L ++DDK
Sbjct: 296 LGVPGLVEAYRAGNVTIANALGTGVADDK 324
>gnl|CDD|30543 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 31.6 bits (72), Expect = 0.20
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 33 LKKGEIVALVSPSGTGKSTILH 54
+ KG ++ L PSG GKST++
Sbjct: 1 MSKGLLIVLSGPSGVGKSTLVK 22
>gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis)
represents a protein family whose members are broadly
conserved in bacteria and have been shown to be
essential to the growth of E. coli and B. subtilis.
Proteins of the YjeQ family contain all sequence motifs
typical of the vast class of P-loop-containing GTPases,
but show a circular permutation, with a G4-G1-G3 pattern
of motifs as opposed to the regular G1-G3-G4 pattern
seen in most GTPases. All YjeQ family proteins display a
unique domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain. This domain architecture suggests a role for
YjeQ as a regulator of translation..
Length = 287
Score = 30.1 bits (68), Expect = 0.50
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 35 KGEIVALVSPSGTGKSTIL 53
KG+ LV SG GKST++
Sbjct: 160 KGKTSVLVGQSGVGKSTLI 178
>gnl|CDD|33398 COG3598, RepA, RecA-family ATPase [DNA replication, recombination,
and repair].
Length = 402
Score = 29.2 bits (65), Expect = 0.88
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 17/77 (22%)
Query: 33 LKKGEIVALVSPSGTGKSTILHIAGLL----------EVPDQGNVIIANQLCNKLSDDKK 82
+KG + L SG GK+T+L + +V + G V+ + L ++
Sbjct: 86 FRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVS-----LELYRE 140
Query: 83 SFLRCSKIGFVYQEHRL 99
L ++ V L
Sbjct: 141 DILE--RLEPVRARMGL 155
>gnl|CDD|31395 COG1202, COG1202, Superfamily II helicase, archaea-specific
[General function prediction only].
Length = 830
Score = 29.2 bits (65), Expect = 0.89
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 29 VHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGN--------VIIANQ 72
V L +GE + +VS + +GK+ I +AG+ + G V +ANQ
Sbjct: 225 VEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQ 276
>gnl|CDD|73180 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines..
Length = 137
Score = 29.3 bits (66), Expect = 0.99
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 38 IVALVSPSGTGKSTILHIAGLLEVPDQG 65
++ L PSG GKST+L LLE D
Sbjct: 1 LIVLSGPSGVGKSTLLKR--LLEEFDPN 26
>gnl|CDD|73044 cd03285, ABC_MSH2_euk, MutS2 homolog in eukaryotes. The MutS
protein initiates DNA mismatch repair by recognizing
mispaired and unpaired bases embedded in duplex DNA and
activating endo- and exonucleases to remove the
mismatch. Members of the MutS family possess C-terminal
domain with a conserved ATPase activity that belongs to
the ATP binding cassette (ABC) superfamily. MutS
homologs (MSH) have been identified in most prokaryotic
and all eukaryotic organisms examined. Prokaryotes have
two homologs (MutS1 and MutS2), whereas seven MSH
proteins (MSH1 to MSH7) have been identified in
eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange..
Length = 222
Score = 28.7 bits (64), Expect = 1.3
Identities = 15/66 (22%), Positives = 29/66 (43%)
Query: 156 AICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMDR 215
AI ++ LII+ + G ++I +Y+ + L ATH H+L + D
Sbjct: 102 AILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADE 161
Query: 216 QITIRD 221
+++
Sbjct: 162 VPNVKN 167
>gnl|CDD|34791 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 28.6 bits (63), Expect = 1.4
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 38 IVALVSPSGTGKSTIL 53
IVA+V P GTGKST++
Sbjct: 71 IVAVVGPPGTGKSTLI 86
>gnl|CDD|31356 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 28.7 bits (64), Expect = 1.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 35 KGEIVALVSPSGTGKSTIL 53
G+I L+ SG GKST++
Sbjct: 163 AGKITVLLGQSGVGKSTLI 181
>gnl|CDD|111407 pfam02504, FA_synthesis, Fatty acid synthesis protein. The plsX
gene is part of the bacterial fab gene cluster which
encodes several key fatty acid biosynthetic enzymes. The
exact function of the plsX protein in fatty acid
synthesis is unknown.
Length = 322
Score = 28.5 bits (64), Expect = 1.5
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 167 IILADEPTGNLDLKTAQQVFSILKYLV-------VRSGLAALIA 203
+I+ D TGN+ LKTA+ V + ++ S L AL+
Sbjct: 221 VIVCDGFTGNVILKTAEGVAKFIGSILKDELKRSKLSKLGALLL 264
>gnl|CDD|133370 cd04170, EF-G_bact, Elongation factor G (EF-G) subfamily.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G
in the GTP form binds to the ribosome, primarily
through the interaction of its EF-Tu-like domain with
the 50S subunit. The binding of EF-G to the ribosome
in this manner stimulates the GTPase activity of EF-G.
On GTP hydrolysis, EF-G undergoes a conformational
change that forces its arm deeper into the A site on
the 30S subunit. To accommodate this domain, the
peptidyl-tRNA in the A site moves to the P site,
carrying the mRNA and the deacylated tRNA with it. The
ribosome may be prepared for these rearrangements by
the initial binding of EF-G as well. The dissociation
of EF-G leaves the ribosome ready to accept the next
aminoacyl-tRNA into the A site. This group contains
only bacterial members.
Length = 268
Score = 28.3 bits (64), Expect = 2.0
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
Query: 39 VALVSPSGTGKST----ILHIAGLL 59
+ALV SG+GK+T +L+ G +
Sbjct: 2 IALVGHSGSGKTTLAEALLYATGAI 26
>gnl|CDD|143799 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the
ATP synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor
Rho.
Length = 213
Score = 28.2 bits (64), Expect = 2.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 35 KGEIVALVSPSGTGKSTILH 54
KG+ + + SGTGK+ +L
Sbjct: 14 KGQRIGIFGGSGTGKTVLLG 33
>gnl|CDD|30859 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA
replication, recombination, and repair / Transcription /
Translation, ribosomal structure and biogenesis].
Length = 513
Score = 27.8 bits (61), Expect = 2.2
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 153 QRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVV---RSGLAALIATHNHDL 209
Q AI +A + ++ A TG KTA + +L+ ++ R ++ALI +L
Sbjct: 56 QLAAIPLILAGRDVLGQAQTGTG----KTAAFLLPLLQKILKSVERKYVSALILAPTREL 111
Query: 210 ASQMDRQIT 218
A Q+ ++
Sbjct: 112 AVQIAEELR 120
>gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2. The sulfonylurea receptor
SUR is an ATP binding cassette (ABC) protein of the
ABCC/MRP family. Unlike other ABC proteins, it has no
intrinsic transport function, neither active nor
passive, but associates with the potassium channel
proteins Kir6.1 or Kir6.2 to form the ATP-sensitive
potassium (K(ATP)) channel. Within the channel complex,
SUR serves as a regulatory subunit that fine-tunes the
gating of Kir6.x in response to alterations in cellular
metabolism. It constitutes a major pharmaceutical
target as it binds numerous drugs, K(ATP) channel
openers and blockers, capable of up- or down-regulating
channel activity..
Length = 257
Score = 28.1 bits (62), Expect = 2.3
Identities = 43/207 (20%), Positives = 87/207 (42%), Gaps = 27/207 (13%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTI-LHIAGLLEVPDQGNVIIANQLCNKLSDD-- 80
PVL++V +K G+ V + +G+GKS++ L ++++ D G ++I +KL
Sbjct: 35 PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFD-GKIVIDGIDISKLPLHTL 93
Query: 81 --------KKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLS 132
+ L I F D + E + Q+ N + +D +
Sbjct: 94 RSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQL---KNMVKSLPGGLDAV- 149
Query: 133 YMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYL 192
+ S G++Q + RA K I++ DE T ++D+ T +IL+ +
Sbjct: 150 -------VTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATE----NILQKV 198
Query: 193 VVRSGLAALIATHNHDLASQMDRQITI 219
V+ + + T H +++ +D + +
Sbjct: 199 VMTAFADRTVVTIAHRVSTILDADLVL 225
>gnl|CDD|146570 pfam04002, DUF2466, Protein of unknown function (DUF2466). This
family was named initially with reference to the E. coli
radC102 mutation which suggested that RadC was involved
in repair of DNA lesions. However the relevant mutation
has subsequently been shown to be in recG, where radC is
in fact an allele of recG. In addition, a personal
communication from Claverys, J-P, et al, indicates a
total failure of all attempts to characterize a
radiation-related function for RadC in Streptococcus
pneumoniae, suggesting that it is not involved in repair
of DNA lesions, in recombination during transformation,
in gene conversion, nor in mismatch repair.
Length = 123
Score = 27.9 bits (63), Expect = 2.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 188 ILKYLVVRSGLAALIATHNH---DLA-SQMDRQITIR 220
I K +R AA+I HNH D SQ D ++T R
Sbjct: 56 IFKR-ALRLNAAAVILAHNHPSGDPTPSQADIELTKR 91
>gnl|CDD|31609 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 27.6 bits (61), Expect = 2.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 31 LSLKKGEIVALVSPSGTGKSTIL 53
L +++ ++ALV P+G GK+T L
Sbjct: 198 LIVEQKRVIALVGPTGVGKTTTL 220
>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B beta.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, beta (or Akt2) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-beta is the
predominant PKB isoform expressed in insulin-responsive
tissues. It plays a critical role in the regulation of
glucose homeostasis. It is also implicated in muscle
cell differentiation. Mice deficient in PKB-beta display
normal growth weights but exhibit severe insulin
resistance and diabetes, accompanied by lipoatrophy and
B-cell failure.
Length = 323
Score = 27.7 bits (61), Expect = 2.9
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQ--------IIAGINHKTAYQR 126
+ C ++ F Q+H L + ++E I FP+ ++AG+ K QR
Sbjct: 188 MMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQR 237
>gnl|CDD|33504 COG3709, COG3709, Uncharacterized component of phosphonate
metabolism [Inorganic ion transport and metabolism].
Length = 192
Score = 27.6 bits (61), Expect = 3.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 33 LKKGEIVALVSPSGTGKSTILHIA 56
G ++A+V PSG GK T+L A
Sbjct: 2 TFMGRLIAVVGPSGAGKDTLLDAA 25
>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B gamma.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, gamma (or Akt3) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-gamma is
predominantly expressed in neuronal tissues. Mice
deficient in PKB-gamma show a reduction in brain weight
due to the decreases in cell size and cell number.
PKB-gamma has also been shown to be upregulated in
estrogen-deficient breast cancer cells,
androgen-independent prostate cancer cells, and primary
ovarian tumors. It acts as a key mediator in the genesis
of ovarian cancer.
Length = 328
Score = 27.3 bits (60), Expect = 3.8
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIA 116
+ C ++ F Q+H L + ++E+I FP+ ++
Sbjct: 188 MMCGRLPFYNQDHEKLFELILMEDIKFPRTLS 219
>gnl|CDD|30598 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 843
Score = 27.2 bits (60), Expect = 4.1
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 157 ICRAIANKPLIILADE---PTGNLD-LKTAQQVFSILKYLVVRSGLAALIATHNHDLASQ 212
I + L+IL DE T D L A ++L+YL + G L ATH H+L
Sbjct: 680 ILDNATERSLVIL-DEIGRGTSTYDGLAIAW---AVLEYLHEKIGCRTLFATHYHELTEL 735
Query: 213 MDRQITIRDGMIA 225
++ +++ ++
Sbjct: 736 EEKLPQVKNYHMS 748
>gnl|CDD|35962 KOG0743, KOG0743, KOG0743, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 457
Score = 27.2 bits (60), Expect = 4.1
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 16 YRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKST-ILHIAGLLEVPDQGNVIIANQLC 74
Y++VGK + K+G + L P GTGKS+ I +A L ++
Sbjct: 227 YKRVGKAW----------KRGYL--LYGPPGTGKSSFIAAMANYLNY----DIYDLELTE 270
Query: 75 NKLSDDKKSFLR 86
KL D + L
Sbjct: 271 VKLDSDLRHLLL 282
>gnl|CDD|30001 cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-catalytic)
subunit B. These ATPases couple ATP hydrolysis to the
build up of a H+ gradient, but V-type ATPases do not
catalyze the reverse reaction. The Vacuolar (V-type)
ATPase is found in the membranes of vacuoles, the golgi
apparatus and in other coated vesicles in eukaryotes.
Archaea have a protein which is similar in sequence to
V-ATPases, but functions like an F-ATPase (called
A-ATPase). A similar protein is also found in a few
bacteria. This subfamily consists of the non-catalytic
beta subunit..
Length = 276
Score = 27.1 bits (60), Expect = 4.7
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 100 LMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYM-DMSQYA 140
L + IE II P++ AY++ +L + DM+ YA
Sbjct: 138 LANDPTIERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYA 179
>gnl|CDD|133313 cd04113, Rab4, Rab4 subfamily. Rab4 has been implicated in
numerous functions within the cell. It helps regulate
endocytosis through the sorting, recycling, and
degradation of early endosomes. Mammalian Rab4 is
involved in the regulation of many surface proteins
including G-protein-coupled receptors, transferrin
receptor, integrins, and surfactant protein A.
Experimental data implicate Rab4 in regulation of the
recycling of internalized receptors back to the plasma
membrane. It is also believed to influence
receptor-mediated antigen processing in B-lymphocytes,
in calcium-dependent exocytosis in platelets, in
alpha-amylase secretion in pancreatic cells, and in
insulin-induced translocation of Glut4 from internal
vesicles to the cell surface. Rab4 is known to share
effector proteins with Rab5 and Rab11. GTPase
activating proteins (GAPs) interact with GTP-bound Rab
and accelerate the hydrolysis of GTP to GDP. Guanine
nucleotide exchange factors (GEFs) interact with
GDP-bound Rabs to promote the formation of the
GTP-bound state. Rabs are further regulated by guanine
nucleotide dissociation inhibitors (GDIs), which
facilitate Rab recycling by masking C-terminal lipid
binding and promoting cytosolic localization. Most Rab
GTPases contain a lipid modification site at the
C-terminus, with sequence motifs CC, CXC, or CCX. Lipid
binding is essential for membrane attachment, a key
feature of most Rab proteins. Due to the presence of
truncated sequences in this CD, the lipid modification
site is not available for annotation.
Length = 161
Score = 26.8 bits (60), Expect = 5.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 41 LVSPSGTGKSTILH 54
++ SGTGKS +LH
Sbjct: 5 IIGSSGTGKSCLLH 18
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases..
Length = 151
Score = 26.7 bits (59), Expect = 5.3
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 31 LSLKKGEIVALVSPSGTGKSTILH-IAGLLEVPDQGNVII-ANQLCNKLSDDKKSFLRCS 88
L L + + L P GTGK+T+ IA L P + + A+ L L +
Sbjct: 14 LELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLV 73
Query: 89 KIGFVYQEHR----LLMD 102
++ F E L +D
Sbjct: 74 RLLFELAEKAKPGVLFID 91
>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B alpha.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, alpha (or Akt1) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-alpha is
predominantly expressed in endothelial cells. It is
critical for the regulation of angiogenesis and the
maintenance of vascular integrity. It also plays a role
in adipocyte differentiation. Mice deficient in
PKB-alpha exhibit perinatal morbidity, growth
retardation, reduction in body weight accompanied by
reduced sizes of multiple organs, and enhanced apoptosis
in some cell types. PKB-alpha activity has been reported
to be frequently elevated in breast and prostate
cancers. In some cancer cells, PKB-alpha may act as a
suppressor of metastasis.
Length = 325
Score = 26.5 bits (58), Expect = 5.5
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQ--------IIAGINHKTAYQR 126
+ C ++ F Q+H L + ++E I FP+ +++G+ K QR
Sbjct: 189 MMCGRLPFYNQDHEKLFELILMEEIRFPRTLSPEAKSLLSGLLKKDPKQR 238
>gnl|CDD|73000 cd03241, ABC_RecN, RecN ATPase involved in DNA repair; ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of
different compounds including sugars, ions, peptides,
and more complex organic molecules. The nucleotide
binding domain shows the highest similarity between all
members of the family. ABC transporters are a subset
of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition
to, the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins..
Length = 276
Score = 26.7 bits (59), Expect = 5.5
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 21 KPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLL 59
K F ++E + L ++G V L +G GKS +L LL
Sbjct: 7 KNFALIEELELDFEEGLTV-LTGETGAGKSILLDALSLL 44
>gnl|CDD|73043 cd03284, ABC_MutS1, MutS1 homolog in eukaryotes. The MutS protein
initiates DNA mismatch repair by recognizing mispaired
and unpaired bases embedded in duplex DNA and activating
endo- and exonucleases to remove the mismatch. Members
of the MutS family possess C-terminal domain with a
conserved ATPase activity that belongs to the ATP
binding cassette (ABC) superfamily. MutS homologs (MSH)
have been identified in most prokaryotic and all
eukaryotic organisms examined. Prokaryotes have two
homologs (MutS1 and MutS2), whereas seven MSH proteins
(MSH1 to MSH7) have been identified in eukaryotes. The
homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6
are primarily involved in mitotic mismatch repair,
whereas MSH4-MSH5 is involved in resolution of Holliday
junctions during meiosis. All members of the MutS
family contain the highly conserved Walker A/B ATPase
domain, and many share a common mechanism of action.
MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to
form sliding clamps, and recognition of specific DNA
structures or lesions results in ADP/ATP exchange..
Length = 216
Score = 26.7 bits (59), Expect = 5.7
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 15/79 (18%)
Query: 144 SSDISGGE-------QQRVAICRAIANKPLIILADE---PTGNLD-LKTAQQVFSILKYL 192
S D++GG + I + L++L DE T D L A +I++YL
Sbjct: 83 SDDLAGGRSTFMVEMVETANILNNATERSLVLL-DEIGRGTSTYDGLSIAW---AIVEYL 138
Query: 193 VVRSGLAALIATHNHDLAS 211
+ G L ATH H+L
Sbjct: 139 HEKIGAKTLFATHYHELTE 157
>gnl|CDD|33731 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 26.5 bits (58), Expect = 5.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 28 NVHLSLKKGEIVALVSPSGTGKSTILHIA 56
N+ ++ + E +V P+G+GK+T+L
Sbjct: 16 NLDITFGESETTIIVGPNGSGKTTVLDAI 44
>gnl|CDD|146043 pfam03215, Rad17, Rad17 cell cycle checkpoint protein.
Length = 490
Score = 26.5 bits (58), Expect = 5.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 26 LENVHLSLKKGEIVALVSPSGTGKSTILHI 55
L+ V L K I+ L PSG GKST + +
Sbjct: 35 LKAVFLESNKQLILLLTGPSGCGKSTTVKV 64
>gnl|CDD|163702 cd08071, MPN_DUF2466, Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also
known as DNA repair protein RadC) domain of unknown
function contains the signature JAB1/MPN/Mov34
metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is
involved in zinc ion coordination and provides the
active site for isopeptidase activity. However, to date,
the name RadC has been misleading and no function has
been determined.
Length = 113
Score = 26.6 bits (60), Expect = 6.1
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 188 ILKYLVVRSGLAALIATHNH---DLA-SQMDRQITIR 220
I K +R AA+I HNH D S+ D ++T R
Sbjct: 51 IFKE-ALRHNAAAIILAHNHPSGDPTPSREDIELTKR 86
>gnl|CDD|30765 COG0416, PlsX, Fatty acid/phospholipid biosynthesis enzyme [Lipid
metabolism].
Length = 338
Score = 26.7 bits (59), Expect = 6.3
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 167 IILADEPTGNLDLKT----AQQVFSILKYLV---VRSGLAALIATHNHD-LASQMD 214
+++ D TGN+ LKT A+ + S+LK + ++S L AL+ L ++D
Sbjct: 225 VVVTDGFTGNVVLKTAEGTAKFILSLLKEEIKSSLKSKLGALLLKPALKRLKKKLD 280
>gnl|CDD|38732 KOG3523, KOG3523, KOG3523, Putative guanine nucleotide exchange
factor TIM [Signal transduction mechanisms].
Length = 695
Score = 26.1 bits (57), Expect = 7.2
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 1 MDSAEVLLLQNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSG 46
M+ E L+ + + +++V K FP++ +K+GE+ LV
Sbjct: 445 MERTEELIRISRQLEFKKV-KAFPLVSQSRWLVKRGELTQLVERRA 489
>gnl|CDD|30814 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 26.3 bits (58), Expect = 7.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 34 KKGEIVALVSPSGTGKSTI 52
KG I+ LV P G GK+++
Sbjct: 348 LKGPILCLVGPPGVGKTSL 366
>gnl|CDD|133282 cd01882, BMS1, Bms1. Bms1 is an essential, evolutionarily
conserved, nucleolar protein. Its depletion interferes
with processing of the 35S pre-rRNA at sites A0, A1,
and A2, and the formation of 40S subunits. Bms1, the
putative endonuclease Rc11, and the essential U3 small
nucleolar RNA form a stable subcomplex that is believed
to control an early step in the formation of the 40S
subumit. The C-terminal domain of Bms1 contains a
GTPase-activating protein (GAP) that functions
intramolecularly. It is believed that Rc11 activates
Bms1 by acting as a guanine-nucleotide exchange factor
(GEF) to promote GDP/GTP exchange, and that activated
(GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Length = 225
Score = 26.1 bits (58), Expect = 7.4
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 38 IVALVSPSGTGKSTIL 53
+VA+V P G GK+T++
Sbjct: 41 VVAVVGPPGVGKTTLI 56
>gnl|CDD|34613 COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 375
Score = 26.1 bits (57), Expect = 7.6
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 24 PVLENVHLSLKKGEIVALVSPSGTGKSTIL 53
VL++ L+L K +V +V +G+GKST +
Sbjct: 117 EVLKD--LALAKRGLVIIVGATGSGKSTTM 144
>gnl|CDD|35964 KOG0745, KOG0745, KOG0745, Putative ATP-dependent Clp-type protease
(AAA+ ATPase superfamily) [Posttranslational
modification, protein turnover, chaperones].
Length = 564
Score = 26.1 bits (57), Expect = 7.9
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 10 QNVKHSYRQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILH-IAGLLEVP 62
++ RQ+ K + + L+K ++ L+ P+G+GK+ + +A +L+VP
Sbjct: 202 AQWPNNQRQIAKALDEDDE-DVELEKSNVL-LLGPTGSGKTLLAQTLARVLDVP 253
>gnl|CDD|144199 pfam00519, PPV_E1_C, Papillomavirus helicase. This protein is a
DNA helicase that is required for initiation of viral
DNA replication. This protein forms a complex with the
E2 protein pfam00508.
Length = 432
Score = 25.9 bits (58), Expect = 8.3
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 124 YQRAMDLLSYMDMSQYANRRSSDISGGEQQRV 155
Y+RA + M MSQ+ +R + G +
Sbjct: 204 YKRAE--MREMSMSQWIKKRCDKVEGEGDWKP 233
>gnl|CDD|31392 COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA
replication, recombination, and repair].
Length = 654
Score = 25.9 bits (56), Expect = 9.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 29 VHLSLKKGEIVALVSPSGTGKS 50
V +LK GE + + +P+GTGK+
Sbjct: 27 VAEALKGGEGLLIEAPTGTGKT 48
>gnl|CDD|29986 cd01120, RecA-like_NTPases, RecA-like NTPases. This family
includes the NTP binding domain of F1 and V1 H+ATPases,
DnaB and related helicases as well as bacterial RecA
and related eukaryotic and archaeal recombinases. This
group also includes bacterial conjugation proteins and
related DNA transfer proteins involved in type II and
type IV secretion..
Length = 165
Score = 25.8 bits (56), Expect = 9.1
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 38 IVALVSPSGTGKSTILHIAGLLEVPDQGNVIIA 70
++ + P+G+GK+T+ L G V+
Sbjct: 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYV 33
>gnl|CDD|32560 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 26.0 bits (57), Expect = 9.3
Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 16/82 (19%)
Query: 2 DSAEVLLLQNVKHSYRQVGKPFPVLENVHLS----------LKKGEIVALVSPSGTGKST 51
AE+ ++ ++ S + G P V+E + L +K+G+++ + PSG G T
Sbjct: 503 KLAELRKMRKLELSGK--GTPVKVVEKLTLEAIEEAEEEYGIKEGDVILVEDPSGGGART 560
Query: 52 ILHIAGLLEVPDQGNVIIANQL 73
+ +I ++
Sbjct: 561 AEELIDK----KPRAIIRGEEM 578
>gnl|CDD|32059 COG1875, COG1875, Predicted ATPase related to phosphate
starvation-inducible protein PhoH [Signal transduction
mechanisms].
Length = 436
Score = 26.0 bits (57), Expect = 9.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 38 IVALVSPSGTGKSTILHIAGLLEVPDQG 65
+V+L +GTGK+ + AGL +V ++
Sbjct: 247 LVSLGGKAGTGKTLLALAAGLEQVLERK 274
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.136 0.380
Gapped
Lambda K H
0.267 0.0825 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,577,240
Number of extensions: 131145
Number of successful extensions: 914
Number of sequences better than 10.0: 1
Number of HSP's gapped: 747
Number of HSP's successfully gapped: 259
Length of query: 227
Length of database: 6,263,737
Length adjustment: 90
Effective length of query: 137
Effective length of database: 4,318,927
Effective search space: 591692999
Effective search space used: 591692999
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.2 bits)