HHsearch alignment for GI: 254780872 and conserved domain: COG0144

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis].
Probab=98.15  E-value=6.9e-06  Score=57.17  Aligned_cols=107  Identities=28%  Similarity=0.345  Sum_probs=74.0

Q ss_pred             CCCHHHCCEEEECCCHHHHHHHHHHC----CCCEEEECCHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCC---CCCCHH
Q ss_conf             58800162888569856999999731----981699521356778888653101121-1112210012321---115301
Q gi|254780872|r   62 THPFKGLRILDLGCGGGLLSEPMAQM----GATVTGIDPSTKNIAIAKNHANMKNIN-IDYRVSCAEEIAE---TDEKFD  133 (254)
Q Consensus        62 ~~~l~g~~VLDiGCG~G~~s~~la~~----g~~V~giD~S~~~i~~Ak~~a~~~~~~-i~~~~~~~~~l~~---~~~~FD  133 (254)
T Consensus       152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD  231 (355)
T COG0144         152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFD  231 (355)
T ss_pred             CCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf             19999796888079997699999996689987699744987899999999997199834899513301431134557778


Q ss_pred             HHEE------CCCHHCCCC----------------HHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             3001------243102688----------------8899888875213332157743
Q gi|254780872|r  134 IILN------MEVIEHVDN----------------IPYFIKTCCSLLLSNGLMFIST  168 (254)
Q Consensus       134 ~V~~------~~vleHv~d----------------~~~~l~~~~~~LkpgG~liist  168 (254)
T Consensus       232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST  288 (355)
T COG0144         232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST  288 (355)
T ss_pred             EEEECCCCCCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             599879998771133581232038999999999999999999998448798899990