HHsearch alignment for GI: 254780872 and conserved domain: COG0144
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis].
Probab=98.15 E-value=6.9e-06 Score=57.17 Aligned_cols=107 Identities=28% Similarity=0.345 Sum_probs=74.0
Q ss_pred CCCHHHCCEEEECCCHHHHHHHHHHC----CCCEEEECCHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCC---CCCCHH
Q ss_conf 58800162888569856999999731----981699521356778888653101121-1112210012321---115301
Q gi|254780872|r 62 THPFKGLRILDLGCGGGLLSEPMAQM----GATVTGIDPSTKNIAIAKNHANMKNIN-IDYRVSCAEEIAE---TDEKFD 133 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG~G~~s~~la~~----g~~V~giD~S~~~i~~Ak~~a~~~~~~-i~~~~~~~~~l~~---~~~~FD 133 (254)
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf 19999796888079997699999996689987699744987899999999997199834899513301431134557778
Q ss_pred HHEE------CCCHHCCCC----------------HHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 3001------243102688----------------8899888875213332157743
Q gi|254780872|r 134 IILN------MEVIEHVDN----------------IPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 134 ~V~~------~~vleHv~d----------------~~~~l~~~~~~LkpgG~liist 168 (254)
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred EEEECCCCCCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 599879998771133581232038999999999999999999998448798899990