HHsearch alignment for GI: 254780872 and conserved domain: COG0293

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=96.90  E-value=0.0043  Score=39.86  Aligned_cols=111  Identities=18%  Similarity=0.249  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHC-CC--CEEEECCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             6599999998865187644458800162888569856999999731-98--16995213567788886531011211112
Q gi|254780872|r   42 VRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQM-GA--TVTGIDPSTKNIAIAKNHANMKNINIDYR  118 (254)
Q Consensus        42 ~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~-g~--~V~giD~S~~~i~~Ak~~a~~~~~~i~~~  118 (254)
T Consensus        27 SRAa~KL~el~~k~~i~------~~~~~ViDLGAAPGgWsQva~~~~~~~~~vvavDi~p~~~--------~~--~V~~i   90 (205)
T COG0293          27 SRAAYKLLELNEKFKLF------KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP--------IP--GVIFL   90 (205)
T ss_pred             CHHHHHHHHHHHHCCCC------CCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCC--------CC--CCEEE
T ss_conf             05888999998743730------5898799838799849999999738888489997754556--------78--94688


Q ss_pred             CCCCCC------CCC--CCCCHHHHEECCC-----HHCCCCH------HHHHHHHHHHCCCCCEEEEEC
Q ss_conf             210012------321--1153013001243-----1026888------899888875213332157743
Q gi|254780872|r  119 VSCAEE------IAE--TDEKFDIILNMEV-----IEHVDNI------PYFIKTCCSLLLSNGLMFIST  168 (254)
Q Consensus       119 ~~~~~~------l~~--~~~~FD~V~~~~v-----leHv~d~------~~~l~~~~~~LkpgG~liist  168 (254)
T Consensus        91 q~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~  159 (205)
T COG0293          91 QGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV  159 (205)
T ss_pred             EEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEE
T ss_conf             413248437999998707787666872588776787220088999999999999987257898399999