HHsearch alignment for GI: 254780872 and conserved domain: COG0293
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=96.90 E-value=0.0043 Score=39.86 Aligned_cols=111 Identities=18% Similarity=0.249 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHC-CC--CEEEECCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 6599999998865187644458800162888569856999999731-98--16995213567788886531011211112
Q gi|254780872|r 42 VRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQM-GA--TVTGIDPSTKNIAIAKNHANMKNINIDYR 118 (254)
Q Consensus 42 ~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~-g~--~V~giD~S~~~i~~Ak~~a~~~~~~i~~~ 118 (254)
T Consensus 27 SRAa~KL~el~~k~~i~------~~~~~ViDLGAAPGgWsQva~~~~~~~~~vvavDi~p~~~--------~~--~V~~i 90 (205)
T COG0293 27 SRAAYKLLELNEKFKLF------KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP--------IP--GVIFL 90 (205)
T ss_pred CHHHHHHHHHHHHCCCC------CCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCC--------CC--CCEEE
T ss_conf 05888999998743730------5898799838799849999999738888489997754556--------78--94688
Q ss_pred CCCCCC------CCC--CCCCHHHHEECCC-----HHCCCCH------HHHHHHHHHHCCCCCEEEEEC
Q ss_conf 210012------321--1153013001243-----1026888------899888875213332157743
Q gi|254780872|r 119 VSCAEE------IAE--TDEKFDIILNMEV-----IEHVDNI------PYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 119 ~~~~~~------l~~--~~~~FD~V~~~~v-----leHv~d~------~~~l~~~~~~LkpgG~liist 168 (254)
T Consensus 91 q~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 91 QGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred EEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEE
T ss_conf 413248437999998707787666872588776787220088999999999999987257898399999