HHsearch alignment for GI: 254780872 and conserved domain: COG0421
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism].
Probab=98.41 E-value=9.3e-07 Score=62.58 Aligned_cols=98 Identities=19% Similarity=0.275 Sum_probs=73.4
Q ss_pred CCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCC-----CCCCCCCCCCCCCCC-CCCCHHHHEECC
Q ss_conf 628885698569999997319--816995213567788886531011-----211112210012321-115301300124
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKN-----INIDYRVSCAEEIAE-TDEKFDIILNME 139 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~-----~~i~~~~~~~~~l~~-~~~~FD~V~~~~ 139 (254)
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D- 156 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD- 156 (282)
T ss_pred CEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCEEEEC-
T ss_conf 7699988976699999983688433799970889999999866675433579736899610799987488767789985-
Q ss_pred CHHCCCCH------HHHHHHHHHHCCCCCEEEEE
Q ss_conf 31026888------89988887521333215774
Q gi|254780872|r 140 VIEHVDNI------PYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 140 vleHv~d~------~~~l~~~~~~LkpgG~liis 167 (254)
T Consensus 157 ~tdp~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 157 STDPV-GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCCC-CCCCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 88998-8430237799999999862889689994