HHsearch alignment for GI: 254780872 and conserved domain: COG1041
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair].
Probab=98.74 E-value=2.7e-08 Score=72.09 Aligned_cols=104 Identities=22% Similarity=0.241 Sum_probs=80.7
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCC-CC-CCCCCCCCCCCCCCCHHHHEEC---CC
Q ss_conf 0162888569856999999731981699521356778888653101121-11-1221001232111530130012---43
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNIN-ID-YRVSCAEEIAETDEKFDIILNM---EV 140 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~-i~-~~~~~~~~l~~~~~~FD~V~~~---~v 140 (254)
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGr 276 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGR 276 (347)
T ss_pred CCCEEECCCCCCCHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 69876457678348888366427567603237999855664156627676168873022127788774235884699871
Q ss_pred HH--CC---CC-HHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 10--26---88-88998888752133321577436
Q gi|254780872|r 141 IE--HV---DN-IPYFIKTCCSLLLSNGLMFISTI 169 (254)
Q Consensus 141 le--Hv---~d-~~~~l~~~~~~LkpgG~liist~ 169 (254)
T Consensus 277 st~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 277 STKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 00245552899999999999987304848999617