HHsearch alignment for GI: 254780872 and conserved domain: COG1189

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=98.36  E-value=1.2e-05  Score=55.60  Aligned_cols=175  Identities=15%  Similarity=0.181  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCC-CEEEECCHHHHHHHHHHHHHCCCCCC-CCCCC
Q ss_conf             59999999886518764445880016288856985699999973198-16995213567788886531011211-11221
Q gi|254780872|r   43 RIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNINI-DYRVS  120 (254)
Q Consensus        43 R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~-~V~giD~S~~~i~~Ak~~a~~~~~~i-~~~~~  120 (254)
T Consensus        62 RG~~KL~~ale~F~l~------~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k----LR~d~rV~~~E~t  131 (245)
T COG1189          62 RGGLKLEKALEEFELD------VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK----LRNDPRVIVLERT  131 (245)
T ss_pred             CHHHHHHHHHHHCCCC------CCCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCCCHH----HHCCCCEEEEECC
T ss_conf             1899999999964868------89978998267876299999875874799997037743786----7359847998527


Q ss_pred             CCCCCCC--CCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEEC-CCCCCHHHHHHHHHHHHH--CCCCC-CCC
Q ss_conf             0012321--11530130012431026888899888875213332157743-676602456415655431--04678-998
Q gi|254780872|r  121 CAEEIAE--TDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIST-INRNLKAMLLAIIGAEYL--LQWLP-KGT  194 (254)
Q Consensus       121 ~~~~l~~--~~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist-~Nr~~~s~~~~i~~ae~i--l~~~P-~gt  194 (254)
T Consensus       132 N~r~l~~~~~~~~~d~~v~DvSF---ISL~~iLp~l~~l~~~~~~~v~LvKPQ-----FEag---r~~v~kkGvv~d~~~  200 (245)
T COG1189         132 NVRYLTPEDFTEKPDLIVIDVSF---ISLKLILPALLLLLKDGGDLVLLVKPQ-----FEAG---REQVGKKGVVRDPKL  200 (245)
T ss_pred             CHHHCCHHHCCCCCCEEEEEEEH---HHHHHHHHHHHHHCCCCCEEEEEECCH-----HHHH---HHHCCCCCEECCCCH
T ss_conf             83118987817677847996423---319988899997427886389973655-----5540---432276863448015


Q ss_pred             CCHHHCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEECCCCCCEEEEEEEECCC
Q ss_conf             571225388999999998698388855057667777578647886451799997587
Q gi|254780872|r  195 HQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNKWQLSAKNMDVNYMVLGHLPK  251 (254)
Q Consensus       195 H~~~~Fi~p~el~~~l~~~g~~~~~~~g~~~~p~~~~w~~~~~~~~vnY~~~~~kp~  251 (254)
T Consensus       201 ~--~~v~--~~i~~~~~~~g~~~~gl---~~Spi~G~------~GNiE~l~~~~k~~  244 (245)
T COG1189         201 H--AEVL--SKIENFAKELGFQVKGL---IKSPIKGG------KGNIEFLLLLKKSG  244 (245)
T ss_pred             H--HHHH--HHHHHHHHHCCCEEEEE---ECCCCCCC------CCCEEEEEEEECCC
T ss_conf             8--9999--99998886459578655---72677678------78675624110368