HHsearch alignment for GI: 254780872 and conserved domain: COG1189
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=98.36 E-value=1.2e-05 Score=55.60 Aligned_cols=175 Identities=15% Similarity=0.181 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCC-CEEEECCHHHHHHHHHHHHHCCCCCC-CCCCC
Q ss_conf 59999999886518764445880016288856985699999973198-16995213567788886531011211-11221
Q gi|254780872|r 43 RIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNINI-DYRVS 120 (254)
Q Consensus 43 R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~-~V~giD~S~~~i~~Ak~~a~~~~~~i-~~~~~ 120 (254)
T Consensus 62 RG~~KL~~ale~F~l~------~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k----LR~d~rV~~~E~t 131 (245)
T COG1189 62 RGGLKLEKALEEFELD------VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK----LRNDPRVIVLERT 131 (245)
T ss_pred CHHHHHHHHHHHCCCC------CCCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCCCHH----HHCCCCEEEEECC
T ss_conf 1899999999964868------89978998267876299999875874799997037743786----7359847998527
Q ss_pred CCCCCCC--CCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEEC-CCCCCHHHHHHHHHHHHH--CCCCC-CCC
Q ss_conf 0012321--11530130012431026888899888875213332157743-676602456415655431--04678-998
Q gi|254780872|r 121 CAEEIAE--TDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIST-INRNLKAMLLAIIGAEYL--LQWLP-KGT 194 (254)
Q Consensus 121 ~~~~l~~--~~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist-~Nr~~~s~~~~i~~ae~i--l~~~P-~gt 194 (254)
T Consensus 132 N~r~l~~~~~~~~~d~~v~DvSF---ISL~~iLp~l~~l~~~~~~~v~LvKPQ-----FEag---r~~v~kkGvv~d~~~ 200 (245)
T COG1189 132 NVRYLTPEDFTEKPDLIVIDVSF---ISLKLILPALLLLLKDGGDLVLLVKPQ-----FEAG---REQVGKKGVVRDPKL 200 (245)
T ss_pred CHHHCCHHHCCCCCCEEEEEEEH---HHHHHHHHHHHHHCCCCCEEEEEECCH-----HHHH---HHHCCCCCEECCCCH
T ss_conf 83118987817677847996423---319988899997427886389973655-----5540---432276863448015
Q ss_pred CCHHHCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEECCCCCCEEEEEEEECCC
Q ss_conf 571225388999999998698388855057667777578647886451799997587
Q gi|254780872|r 195 HQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNKWQLSAKNMDVNYMVLGHLPK 251 (254)
Q Consensus 195 H~~~~Fi~p~el~~~l~~~g~~~~~~~g~~~~p~~~~w~~~~~~~~vnY~~~~~kp~ 251 (254)
T Consensus 201 ~--~~v~--~~i~~~~~~~g~~~~gl---~~Spi~G~------~GNiE~l~~~~k~~ 244 (245)
T COG1189 201 H--AEVL--SKIENFAKELGFQVKGL---IKSPIKGG------KGNIEFLLLLKKSG 244 (245)
T ss_pred H--HHHH--HHHHHHHHHCCCEEEEE---ECCCCCCC------CCCEEEEEEEECCC
T ss_conf 8--9999--99998886459578655---72677678------78675624110368