HHsearch alignment for GI: 254780872 and conserved domain: COG1352
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].
Probab=98.96 E-value=3.7e-09 Score=77.47 Aligned_cols=124 Identities=16% Similarity=0.298 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHH----HHHHHHH-------CCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 565999999988651876444588001628885698569----9999973-------19816995213567788886531
Q gi|254780872|r 41 PVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGL----LSEPMAQ-------MGATVTGIDPSTKNIAIAKNHAN 109 (254)
Q Consensus 41 ~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~----~s~~la~-------~g~~V~giD~S~~~i~~Ak~~a~ 109 (254)
T Consensus 75 ~~~f~~l~~~v~p~l~~~~~~----~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y 150 (268)
T COG1352 75 PEHFEELRDEVLPELVKRKKG----RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIY 150 (268)
T ss_pred CHHHHHHHHHHHHHHHHHCCC----CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCC
T ss_conf 089999999987998730469----8539996676899558999999998733225874389999799999999862888
Q ss_pred C-----CCCC-------------------------CCCCCCCCCCCCCCCCCHHHHEECCCHHCCCCH--HHHHHHHHHH
Q ss_conf 0-----1121-------------------------111221001232111530130012431026888--8998888752
Q gi|254780872|r 110 M-----KNIN-------------------------IDYRVSCAEEIAETDEKFDIILNMEVIEHVDNI--PYFIKTCCSL 157 (254)
Q Consensus 110 ~-----~~~~-------------------------i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d~--~~~l~~~~~~ 157 (254)
T Consensus 151 ~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~ 230 (268)
T COG1352 151 PSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADS 230 (268)
T ss_pred CHHHHHCCCCHHHHHHHEEECCCCCEEECHHHHCCCEEEECCCCCCCCCCCCCCEEEECCEEEEECHHHHHHHHHHHHHH
T ss_conf 76676544998999633764699847987687624377535788875435898889984148863789999999999997
Q ss_pred CCCCCEEEEEC
Q ss_conf 13332157743
Q gi|254780872|r 158 LLSNGLMFIST 168 (254)
Q Consensus 158 LkpgG~liist 168 (254)
T Consensus 231 L~~gG~LflG~ 241 (268)
T COG1352 231 LKPGGLLFLGH 241 (268)
T ss_pred HCCCCEEEECC
T ss_conf 48997899826