HHsearch alignment for GI: 254780872 and conserved domain: COG1889
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=97.29 E-value=0.004 Score=40.04 Aligned_cols=142 Identities=17% Similarity=0.271 Sum_probs=83.3
Q ss_pred HHCCEEEECCCHHHHHHHHHHC-C-CCEEEECCHHHHHH----HHHHHHHCCCCCCCCCCCCCCCC---CCCCCCHHHHE
Q ss_conf 0162888569856999999731-9-81699521356778----88865310112111122100123---21115301300
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM-G-ATVTGIDPSTKNIA----IAKNHANMKNINIDYRVSCAEEI---AETDEKFDIIL 136 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~-g-~~V~giD~S~~~i~----~Ak~~a~~~~~~i~~~~~~~~~l---~~~~~~FD~V~ 136 (254)
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-----R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-----RPNIIPILEDARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred CCCEEEEEECCCCCCHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHH-----CCCCEEEECCCCCCHHHHHHCCCCCEEE
T ss_conf 99878995036798576777604787089999644469999999874-----7874002013688377653124543899
Q ss_pred ECCCHHCCCCH---HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHC
Q ss_conf 12431026888---899888875213332157743676602456415655431046789985712253889999999986
Q gi|254780872|r 137 NMEVIEHVDNI---PYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAAN 213 (254)
Q Consensus 137 ~~~vleHv~d~---~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~ 213 (254)
T Consensus 151 ~-----DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdv------------------T~dp~~-vf-~~ev~kL~~~ 205 (231)
T COG1889 151 Q-----DVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDV------------------TADPEE-VF-KDEVEKLEEG 205 (231)
T ss_pred E-----ECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCC------------------CCCHHH-HH-HHHHHHHHHC
T ss_conf 8-----368810789999889973216973999998512304------------------589899-99-9999999856
Q ss_pred CCEEEEEEEEEECCCCCEEEECCCCCCEEEEEEEEC
Q ss_conf 983888550576677775786478864517999975
Q gi|254780872|r 214 KVKIIDRVGVVYNVFCNKWQLSAKNMDVNYMVLGHL 249 (254)
Q Consensus 214 g~~~~~~~g~~~~p~~~~w~~~~~~~~vnY~~~~~k 249 (254)
T Consensus 206 ~f~i~e~~~L--ePye~-------D---H~~i~~~~ 229 (231)
T COG1889 206 GFEILEVVDL--EPYEK-------D---HALIVAKY 229 (231)
T ss_pred CCEEEEEECC--CCCCC-------C---EEEEEEEE
T ss_conf 9504677636--77666-------4---28999962