HHsearch alignment for GI: 254780872 and conserved domain: COG2263

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis].
Probab=99.04  E-value=2.7e-10  Score=84.47  Aligned_cols=124  Identities=21%  Similarity=0.288  Sum_probs=86.1

Q ss_pred             CCHHHCCEEEECCCHHHHHHHHHHCC-CCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEEC---
Q ss_conf             88001628885698569999997319-81699521356778888653101121111221001232111530130012---
Q gi|254780872|r   63 HPFKGLRILDLGCGGGLLSEPMAQMG-ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNM---  138 (254)
Q Consensus        63 ~~l~g~~VLDiGCG~G~~s~~la~~g-~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~---  138 (254)
T Consensus        42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNPPF  118 (198)
T COG2263          42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMNPPF  118 (198)
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCHHHC---CCCCCEEEECCCC
T ss_conf             8847888888278847889999862971799993698999999988886088469998210114---7766669978997


Q ss_pred             C-CHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEE
Q ss_conf             4-310268888998888752133321577436766024564156554310467899857122538899999999869838
Q gi|254780872|r  139 E-VIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKI  217 (254)
Q Consensus       139 ~-vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~  217 (254)
T Consensus       119 G~~~rh-aDr~-Fl~~Ale~s----~vVYsiH~a--------------------------~---~~~f~~~~~~~~G~~v  163 (198)
T COG2263         119 GSQRRH-ADRP-FLLKALEIS----DVVYSIHKA--------------------------G---SRDFVEKFAADLGGTV  163 (198)
T ss_pred             CCCCCC-CCHH-HHHHHHHHH----HEEEEEECC--------------------------C---CHHHHHHHHHHCCCEE
T ss_conf             322136-8889-999999740----147874016--------------------------6---0799999988549708


Q ss_pred             EEEEEEE
Q ss_conf             8855057
Q gi|254780872|r  218 IDRVGVV  224 (254)
Q Consensus       218 ~~~~g~~  224 (254)
T Consensus       164 ~~~~~~~  170 (198)
T COG2263         164 THIERAR  170 (198)
T ss_pred             EEEEEEE
T ss_conf             9999999