HHsearch alignment for GI: 254780872 and conserved domain: COG2263
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis].
Probab=99.04 E-value=2.7e-10 Score=84.47 Aligned_cols=124 Identities=21% Similarity=0.288 Sum_probs=86.1
Q ss_pred CCHHHCCEEEECCCHHHHHHHHHHCC-CCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEEC---
Q ss_conf 88001628885698569999997319-81699521356778888653101121111221001232111530130012---
Q gi|254780872|r 63 HPFKGLRILDLGCGGGLLSEPMAQMG-ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNM--- 138 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~~s~~la~~g-~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~--- 138 (254)
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNPPF 118 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMNPPF 118 (198)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCHHHC---CCCCCEEEECCCC
T ss_conf 8847888888278847889999862971799993698999999988886088469998210114---7766669978997
Q ss_pred C-CHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEE
Q ss_conf 4-310268888998888752133321577436766024564156554310467899857122538899999999869838
Q gi|254780872|r 139 E-VIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKI 217 (254)
Q Consensus 139 ~-vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~ 217 (254)
T Consensus 119 G~~~rh-aDr~-Fl~~Ale~s----~vVYsiH~a--------------------------~---~~~f~~~~~~~~G~~v 163 (198)
T COG2263 119 GSQRRH-ADRP-FLLKALEIS----DVVYSIHKA--------------------------G---SRDFVEKFAADLGGTV 163 (198)
T ss_pred CCCCCC-CCHH-HHHHHHHHH----HEEEEEECC--------------------------C---CHHHHHHHHHHCCCEE
T ss_conf 322136-8889-999999740----147874016--------------------------6---0799999988549708
Q ss_pred EEEEEEE
Q ss_conf 8855057
Q gi|254780872|r 218 IDRVGVV 224 (254)
Q Consensus 218 ~~~~g~~ 224 (254)
T Consensus 164 ~~~~~~~ 170 (198)
T COG2263 164 THIERAR 170 (198)
T ss_pred EEEEEEE
T ss_conf 9999999