HHsearch alignment for GI: 254780872 and conserved domain: COG2264
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis].
Probab=99.71 E-value=1.9e-16 Score=122.68 Aligned_cols=128 Identities=23% Similarity=0.462 Sum_probs=98.2
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCC-EEEECCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCHHHHEECCCHH
Q ss_conf 0162888569856999999731981-699521356778888653101121--1112210012321115301300124310
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGAT-VTGIDPSTKNIAIAKNHANMKNIN--IDYRVSCAEEIAETDEKFDIILNMEVIE 142 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~-V~giD~S~~~i~~Ak~~a~~~~~~--i~~~~~~~~~l~~~~~~FD~V~~~~vle 142 (254)
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~~~DvIVAN-IL- 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENGPFDVIVAN-IL- 238 (300)
T ss_pred CCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHC-CCCCCCEEEEH-HH-
T ss_conf 8987998267815999999981986689971888999999999997699602200345630001-36865689860-52-
Q ss_pred CCCCH-HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 26888-89988887521333215774367660245641565543104678998571225388999999998698388855
Q gi|254780872|r 143 HVDNI-PYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRV 221 (254)
Q Consensus 143 Hv~d~-~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~ 221 (254)
T Consensus 239 --A~vl~~La~~~~~~lkpgg~lIlSGI--------------------l~------~---q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 239 --AEVLVELAPDIKRLLKPGGRLILSGI--------------------LE------D---QAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred --HHHHHHHHHHHHHHCCCCCEEEEEEE--------------------CH------H---HHHHHHHHHHHCCCEEEEEE
T ss_conf --78999999999987088936999862--------------------07------5---89999999985897686897
Q ss_pred EEEECCCCCEEE
Q ss_conf 057667777578
Q gi|254780872|r 222 GVVYNVFCNKWQ 233 (254)
Q Consensus 222 g~~~~p~~~~w~ 233 (254)
T Consensus 288 ------~~~eW~ 293 (300)
T COG2264 288 ------EREEWV 293 (300)
T ss_pred ------ECCCEE
T ss_conf ------008779