HHsearch alignment for GI: 254780872 and conserved domain: COG2265
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].
Probab=98.66 E-value=1e-07 Score=68.53 Aligned_cols=115 Identities=24% Similarity=0.406 Sum_probs=85.2
Q ss_pred HHCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-CCC
Q ss_conf 5175659999999886518764445880016288856985699999973198169952135677888865310112-111
Q gi|254780872|r 38 QINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NID 116 (254)
Q Consensus 38 ~~N~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~ 116 (254)
T Consensus 272 Q~N~~~~ekl~~~a~~~~~~-------~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~ 344 (432)
T COG2265 272 QVNPAVAEKLYETALEWLEL-------AGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVE 344 (432)
T ss_pred EECHHHHHHHHHHHHHHHHC-------CCCCEEEECCCCCCHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEE
T ss_conf 33999999999999999743-------69977999355887013553124657999964899999999999973988779
Q ss_pred CCCCCCCCCCCCC---CCHHHHEECCCHHCCCCH------HHHHHHHHHHCCCCCEEEEEC
Q ss_conf 1221001232111---530130012431026888------899888875213332157743
Q gi|254780872|r 117 YRVSCAEEIAETD---EKFDIILNMEVIEHVDNI------PYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 117 ~~~~~~~~l~~~~---~~FD~V~~~~vleHv~d~------~~~l~~~~~~LkpgG~liist 168 (254)
T Consensus 345 f~~~~ae~~~~~~~~~~~~d~Vvv--------DPPR~G~~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 345 FIAGDAEEFTPAWWEGYKPDVVVV--------DPPRAGADREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred EEECCHHHHHHHHCCCCCCCEEEE--------CCCCCCCCHHHHHHHHH-CCCCCEEEEEC
T ss_conf 995868888651002579998998--------99999999899999985-58986899976