HHsearch alignment for GI: 254780872 and conserved domain: COG2265

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].
Probab=98.66  E-value=1e-07  Score=68.53  Aligned_cols=115  Identities=24%  Similarity=0.406  Sum_probs=85.2

Q ss_pred             HHCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-CCC
Q ss_conf             5175659999999886518764445880016288856985699999973198169952135677888865310112-111
Q gi|254780872|r   38 QINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NID  116 (254)
Q Consensus        38 ~~N~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~  116 (254)
T Consensus       272 Q~N~~~~ekl~~~a~~~~~~-------~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~  344 (432)
T COG2265         272 QVNPAVAEKLYETALEWLEL-------AGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVE  344 (432)
T ss_pred             EECHHHHHHHHHHHHHHHHC-------CCCCEEEECCCCCCHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEE
T ss_conf             33999999999999999743-------69977999355887013553124657999964899999999999973988779


Q ss_pred             CCCCCCCCCCCCC---CCHHHHEECCCHHCCCCH------HHHHHHHHHHCCCCCEEEEEC
Q ss_conf             1221001232111---530130012431026888------899888875213332157743
Q gi|254780872|r  117 YRVSCAEEIAETD---EKFDIILNMEVIEHVDNI------PYFIKTCCSLLLSNGLMFIST  168 (254)
Q Consensus       117 ~~~~~~~~l~~~~---~~FD~V~~~~vleHv~d~------~~~l~~~~~~LkpgG~liist  168 (254)
T Consensus       345 f~~~~ae~~~~~~~~~~~~d~Vvv--------DPPR~G~~~~~lk~l~~-~~p~~IvYVSC  396 (432)
T COG2265         345 FIAGDAEEFTPAWWEGYKPDVVVV--------DPPRAGADREVLKQLAK-LKPKRIVYVSC  396 (432)
T ss_pred             EEECCHHHHHHHHCCCCCCCEEEE--------CCCCCCCCHHHHHHHHH-CCCCCEEEEEC
T ss_conf             995868888651002579998998--------99999999899999985-58986899976