HHsearch alignment for GI: 254780872 and conserved domain: COG2813
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].
Probab=99.18 E-value=1.4e-10 Score=86.38 Aligned_cols=101 Identities=25% Similarity=0.376 Sum_probs=76.5
Q ss_pred HCCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCHHHHEECCCHHC
Q ss_conf 1628885698569999997319--816995213567788886531011211-1122100123211153013001243102
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNINI-DYRVSCAEEIAETDEKFDIILNMEVIEH 143 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~~~i-~~~~~~~~~l~~~~~~FD~V~~~~vleH 143 (254)
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~--v~~kfd~IisNPPfh~ 236 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP--VEGKFDLIISNPPFHA 236 (300)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCCCCCEEEECCCCCC
T ss_conf 99688707884299999998689872899826699999988769973987637998124466--5440068984888467
Q ss_pred CCC-----HHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 688-----889988887521333215774367
Q gi|254780872|r 144 VDN-----IPYFIKTCCSLLLSNGLMFISTIN 170 (254)
Q Consensus 144 v~d-----~~~~l~~~~~~LkpgG~liist~N 170 (254)
T Consensus 237 G~~v~~~~~~~ii~~A~~~L~~gGeL~iV-an 267 (300)
T COG2813 237 GKAVVHSLAQEIIAAAARHLKPGGELWIV-AN 267 (300)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEE-EC
T ss_conf 71016788999999999760459779999-75