HHsearch alignment for GI: 254780872 and conserved domain: COG4076

>COG4076 Predicted RNA methylase [General function prediction only].
Probab=97.57  E-value=0.00021  Score=48.02  Aligned_cols=110  Identities=20%  Similarity=0.288  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCC
Q ss_conf             659999999886518764445880016288856985699999973198169952135677888865310112-1111221
Q gi|254780872|r   42 VRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVS  120 (254)
Q Consensus        42 ~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~  120 (254)
T Consensus        19 eRlavF~~ai~~va~-----------d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~g   87 (252)
T COG4076          19 ERLAVFTSAIAEVAE-----------DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVG   87 (252)
T ss_pred             HHHHHHHHHHHHHHH-----------HCEEECCCCCCHHHHHHHHHHCEEEEEECCCHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf             999999999999864-----------105634688632889887532027887418078777650577788764689805


Q ss_pred             CCCCCCCCCCCHHHHEECCCHHC--C-CCHHHHHHHHHHHCCCCCEEE
Q ss_conf             00123211153013001243102--6-888899888875213332157
Q gi|254780872|r  121 CAEEIAETDEKFDIILNMEVIEH--V-DNIPYFIKTCCSLLLSNGLMF  165 (254)
Q Consensus       121 ~~~~l~~~~~~FD~V~~~~vleH--v-~d~~~~l~~~~~~LkpgG~li  165 (254)
T Consensus        88 DA~~y~f--e~ADvvic-EmlDTaLi~E~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076          88 DARDYDF--ENADVVIC-EMLDTALIEEKQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             CCCCCCC--CCCCEEHH-HHHHHHHHCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             5321332--34534087-776677633421289999999863388252