HHsearch alignment for GI: 254780872 and conserved domain: COG4262

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only].
Probab=97.94  E-value=8e-05  Score=50.56  Aligned_cols=135  Identities=16%  Similarity=0.262  Sum_probs=84.1

Q ss_pred             CCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCC--------CCCCCCCCCCCCCC-CCCCCCHHHHE
Q ss_conf             628885698569999997319--81699521356778888653101--------12111122100123-21115301300
Q gi|254780872|r   68 LRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMK--------NINIDYRVSCAEEI-AETDEKFDIIL  136 (254)
Q Consensus        68 ~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~--------~~~i~~~~~~~~~l-~~~~~~FD~V~  136 (254)
T Consensus       291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vI  370 (508)
T COG4262         291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVI  370 (508)
T ss_pred             CEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHCCCCCEEE
T ss_conf             26999728751879999718885527897438899987300267666036776687569996547889974134555799


Q ss_pred             ECCCHHCCCCH----------HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHH
Q ss_conf             12431026888----------89988887521333215774367660245641565543104678998571225388999
Q gi|254780872|r  137 NMEVIEHVDNI----------PYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEM  206 (254)
Q Consensus       137 ~~~vleHv~d~----------~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el  206 (254)
T Consensus       371 V-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags--~--y------------~tp------~vfw---~i  420 (508)
T COG4262         371 V-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS--P--Y------------FTP------RVFW---RI  420 (508)
T ss_pred             E-----ECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCC--C--C------------CCC------CEEE---EE
T ss_conf             9-----68998995134321089999999733757549995488--7--6------------577------3011---20


Q ss_pred             HHHHHHCCCEEEEEEEEEECCCCCEEEE
Q ss_conf             9999986983888550576677775786
Q gi|254780872|r  207 ECFLAANKVKIIDRVGVVYNVFCNKWQL  234 (254)
Q Consensus       207 ~~~l~~~g~~~~~~~g~~~~p~~~~w~~  234 (254)
T Consensus       421 ~aTik~AG~~~~Pyh--v~VPTFGeWGf  446 (508)
T COG4262         421 DATIKSAGYRVWPYH--VHVPTFGEWGF  446 (508)
T ss_pred             HHHHHHCCCEEEEEE--EECCCCCCCCE
T ss_conf             547873762553248--95476553112