HHsearch alignment for GI: 254780872 and conserved domain: COG5459
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=96.18 E-value=0.0086 Score=37.96 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=59.0
Q ss_pred CCCCCHHHCCEEEECCCHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCC----CCCCCCCC
Q ss_conf 4458800162888569856999999731---98169952135677888865310112-1111221001----23211153
Q gi|254780872|r 60 DDTHPFKGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAE----EIAETDEK 131 (254)
Q Consensus 60 ~~~~~l~g~~VLDiGCG~G~~s~~la~~---g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~----~l~~~~~~ 131 (254)
T Consensus 107 ~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ 185 (484)
T COG5459 107 KRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADL 185 (484)
T ss_pred HHCCCCCCCHHHCCCCCCCHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCC-CCE
T ss_conf 7488868610200377875212332033788022123404899999999998604533477778865021047883-223
Q ss_pred HHHHEECCCHHCCCCH---HHHHHHHHHHCCCCCEEEEECC
Q ss_conf 0130012431026888---8998888752133321577436
Q gi|254780872|r 132 FDIILNMEVIEHVDNI---PYFIKTCCSLLLSNGLMFISTI 169 (254)
Q Consensus 132 FD~V~~~~vleHv~d~---~~~l~~~~~~LkpgG~liist~ 169 (254)
T Consensus 186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred EEHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 63334354444355743188999999986068974999717