HHsearch alignment for GI: 254780872 and conserved domain: KOG1540
>KOG1540 consensus.
Probab=99.85 E-value=1.9e-20 Score=147.43 Aligned_cols=200 Identities=18% Similarity=0.287 Sum_probs=136.9
Q ss_pred CCCCCHHHHHH-----HHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHH
Q ss_conf 67898899999-----9999887468888712677517565999999988651876444588001628885698569999
Q gi|254780872|r 8 YTTKNQDAINQ-----FSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSE 82 (254)
Q Consensus 8 ~~t~~~~ei~~-----F~~~a~~WwD~~g~~~~Lh~~N~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~ 82 (254)
T Consensus 50 f~tV~e~eke~~V~~vF~~vA~~Y-D---------~mND~mSlGiHRlWKd~~---v~~L~p~~~m~~lDvaGGTGDiaF 116 (296)
T KOG1540 50 FKTVRESEKERLVHHVFESVAKKY-D---------IMNDAMSLGIHRLWKDMF---VSKLGPGKGMKVLDVAGGTGDIAF 116 (296)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-H---------HHHHHHHCCHHHHHHHHH---HHCCCCCCCCEEEEECCCCCHHHH
T ss_conf 120365553348999999888888-7---------788876212367888876---621587778758983477525677
Q ss_pred HHHHC--------CCCEEEECCHHHHHHHHHHHHHCCCCC----CCCCCCCCCCCCCCCCCHHHHEECCCHHCCCCHHHH
Q ss_conf 99731--------981699521356778888653101121----111221001232111530130012431026888899
Q gi|254780872|r 83 PMAQM--------GATVTGIDPSTKNIAIAKNHANMKNIN----IDYRVSCAEEIAETDEKFDIILNMEVIEHVDNIPYF 150 (254)
Q Consensus 83 ~la~~--------g~~V~giD~S~~~i~~Ak~~a~~~~~~----i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d~~~~ 150 (254)
T Consensus 117 ril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~ 196 (296)
T KOG1540 117 RILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKA 196 (296)
T ss_pred HHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCEECCCCHHHH
T ss_conf 79876113457777617999389899999987775159776871699947701089997751158884211147877899
Q ss_pred HHHHHHHCCCCCEEEEE---CCCCCCHHHHHHHHHHHHHCCCCCC-CC------CCH-------HHCCCHHHHHHHHHHC
Q ss_conf 88887521333215774---3676602456415655431046789-98------571-------2253889999999986
Q gi|254780872|r 151 IKTCCSLLLSNGLMFIS---TINRNLKAMLLAIIGAEYLLQWLPK-GT------HQY-------DKFIKPTEMECFLAAN 213 (254)
Q Consensus 151 l~~~~~~LkpgG~liis---t~Nr~~~s~~~~i~~ae~il~~~P~-gt------H~~-------~~Fi~p~el~~~l~~~ 213 (254)
T Consensus 197 l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ys----f~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~mieda 272 (296)
T KOG1540 197 LREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYS----FDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDA 272 (296)
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH----HHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 99998752778679999735454077899997122----23211055766521765454776650699889999999972
Q ss_pred CCEEEE-EEEEE
Q ss_conf 983888-55057
Q gi|254780872|r 214 KVKIID-RVGVV 224 (254)
Q Consensus 214 g~~~~~-~~g~~ 224 (254)
T Consensus 273 GF~~~~~ye~lt 284 (296)
T KOG1540 273 GFSSVNGYENLT 284 (296)
T ss_pred CCCCCCCCCCCE
T ss_conf 875102304421