HHsearch alignment for GI: 254780872 and conserved domain: PRK03522

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed.
Probab=98.99  E-value=1.6e-08  Score=73.46  Aligned_cols=121  Identities=21%  Similarity=0.223  Sum_probs=87.4

Q ss_pred             HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCC-CCCCHHHHEECCCHHC
Q ss_conf             016288856985699999973198169952135677888865310112-11112210012321-1153013001243102
Q gi|254780872|r   66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAE-TDEKFDIILNMEVIEH  143 (254)
Q Consensus        66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~-~~~~FD~V~~~~vleH  143 (254)
T Consensus       233 ~~~~vlDlycG~G~~sl~lA~~~~~V~gvE~~~~av~~A~~na~~ngi~nv~f~~~d~~~~~~~~~~~~d~vvv------  306 (375)
T PRK03522        233 PPKSMWDLFCGVGGFGLHCATPDMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPELVLV------  306 (375)
T ss_pred             CCCEEEEECCCCCHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEE------
T ss_conf             89789996578538889876417889999845999999999999869987699973778887634568978998------


Q ss_pred             CCCHH------HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEE
Q ss_conf             68888------998888752133321577436766024564156554310467899857122538899999999869838
Q gi|254780872|r  144 VDNIP------YFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKI  217 (254)
Q Consensus       144 v~d~~------~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~  217 (254)
T Consensus       307 --DPPR~Gl~~~~~~~l~-~~~p~~IvYVSC---nP~Tl--------------------------aRDl~~L---~gy~l  351 (375)
T PRK03522        307 --NPPRRGIGKPLCDYLS-QMAPRFILYSSC---NAQTM--------------------------AKDLAHL---PGYRI  351 (375)
T ss_pred             --CCCCCCCHHHHHHHHH-HCCCCEEEEEEC---CHHHH--------------------------HHHHHHH---CCCEE
T ss_conf             --9997775199999998-659996999907---98999--------------------------9998884---39768


Q ss_pred             EEEEEEEECC
Q ss_conf             8855057667
Q gi|254780872|r  218 IDRVGVVYNV  227 (254)
Q Consensus       218 ~~~~g~~~~p  227 (254)
T Consensus       352 ~~v~~~DmFP  361 (375)
T PRK03522        352 ERVQLFDMFP  361 (375)
T ss_pred             EEEEEECCCC
T ss_conf             8999953698