HHsearch alignment for GI: 254780872 and conserved domain: PRK03522
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed.
Probab=98.99 E-value=1.6e-08 Score=73.46 Aligned_cols=121 Identities=21% Similarity=0.223 Sum_probs=87.4
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCC-CCCCHHHHEECCCHHC
Q ss_conf 016288856985699999973198169952135677888865310112-11112210012321-1153013001243102
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAE-TDEKFDIILNMEVIEH 143 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~-~~~~FD~V~~~~vleH 143 (254)
T Consensus 233 ~~~~vlDlycG~G~~sl~lA~~~~~V~gvE~~~~av~~A~~na~~ngi~nv~f~~~d~~~~~~~~~~~~d~vvv------ 306 (375)
T PRK03522 233 PPKSMWDLFCGVGGFGLHCATPDMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPELVLV------ 306 (375)
T ss_pred CCCEEEEECCCCCHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEE------
T ss_conf 89789996578538889876417889999845999999999999869987699973778887634568978998------
Q ss_pred CCCHH------HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEE
Q ss_conf 68888------998888752133321577436766024564156554310467899857122538899999999869838
Q gi|254780872|r 144 VDNIP------YFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKI 217 (254)
Q Consensus 144 v~d~~------~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~ 217 (254)
T Consensus 307 --DPPR~Gl~~~~~~~l~-~~~p~~IvYVSC---nP~Tl--------------------------aRDl~~L---~gy~l 351 (375)
T PRK03522 307 --NPPRRGIGKPLCDYLS-QMAPRFILYSSC---NAQTM--------------------------AKDLAHL---PGYRI 351 (375)
T ss_pred --CCCCCCCHHHHHHHHH-HCCCCEEEEEEC---CHHHH--------------------------HHHHHHH---CCCEE
T ss_conf --9997775199999998-659996999907---98999--------------------------9998884---39768
Q ss_pred EEEEEEEECC
Q ss_conf 8855057667
Q gi|254780872|r 218 IDRVGVVYNV 227 (254)
Q Consensus 218 ~~~~g~~~~p 227 (254)
T Consensus 352 ~~v~~~DmFP 361 (375)
T PRK03522 352 ERVQLFDMFP 361 (375)
T ss_pred EEEEEECCCC
T ss_conf 8999953698