HHsearch alignment for GI: 254780872 and conserved domain: PRK04266

>PRK04266 fibrillarin; Provisional.
Probab=98.04  E-value=0.00022  Score=47.88  Aligned_cols=157  Identities=16%  Similarity=0.178  Sum_probs=88.6

Q ss_pred             CCCCCCCHHHCCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---CCCCCH
Q ss_conf             644458800162888569856999999731--981699521356778888653101121111221001232---111530
Q gi|254780872|r   58 KSDDTHPFKGLRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA---ETDEKF  132 (254)
Q Consensus        58 ~~~~~~~l~g~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~---~~~~~F  132 (254)
T Consensus        64 g~~~~~i~~gskVLYLGAasGTTVSHvsDiV~~G~VyAVE~spr~~RdL~~-la~~R~NivPIl~DAr~P~~Y~~~v~~V  142 (226)
T PRK04266         64 GLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGRVYAVEFAPRVMRELLL-VAEERKNIIPILGDARKPEEYAHLVEKV  142 (226)
T ss_pred             CCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEEECCHHHHHHHH-HHHHCCCCEEEECCCCCHHHHHHHCCCC
T ss_conf             975567589987999547779848889875179649999827077899999-9850899625754678845644205656


Q ss_pred             HHHEECCCHHCCCCH-HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHH
Q ss_conf             130012431026888-8998888752133321577436766024564156554310467899857122538899999999
Q gi|254780872|r  133 DIILNMEVIEHVDNI-PYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLA  211 (254)
Q Consensus       133 D~V~~~~vleHv~d~-~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~  211 (254)
T Consensus       143 D~i~q-DvAQ--~dQa~I~~~Na~~FLk~gG~~~l~iKA~Sid~-----------t~--~p~----~vf---~~~~~~L~  199 (226)
T PRK04266        143 DVIYQ-DVAQ--PNQAEIAADNADIFLKPGGYLMLAIKARSIDV-----------TK--DPK----EIF---KEEIKKLE  199 (226)
T ss_pred             CEEEE-ECCC--HHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEC-----------CC--CHH----HHH---HHHHHHHH
T ss_conf             58996-0677--42899999999986015988999997423564-----------68--989----999---99999998


Q ss_pred             HCCCEEEEEEEEEECCCCCEEEECCCCCCEEEEEEEECC
Q ss_conf             869838885505766777757864788645179999758
Q gi|254780872|r  212 ANKVKIIDRVGVVYNVFCNKWQLSAKNMDVNYMVLGHLP  250 (254)
Q Consensus       212 ~~g~~~~~~~g~~~~p~~~~w~~~~~~~~vnY~~~~~kp  250 (254)
T Consensus       200 ~~~~~~~e~i~--L~py~~-------d---H~~vv~r~~  226 (226)
T PRK04266        200 EGGFEILEVVD--LEPYHK-------D---HAAVVARKK  226 (226)
T ss_pred             HCCCCEEEEEE--CCCCCC-------C---CEEEEEECC
T ss_conf             76996689981--577678-------8---289999669