HHsearch alignment for GI: 254780872 and conserved domain: PRK04266
>PRK04266 fibrillarin; Provisional.
Probab=98.04 E-value=0.00022 Score=47.88 Aligned_cols=157 Identities=16% Similarity=0.178 Sum_probs=88.6
Q ss_pred CCCCCCCHHHCCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---CCCCCH
Q ss_conf 644458800162888569856999999731--981699521356778888653101121111221001232---111530
Q gi|254780872|r 58 KSDDTHPFKGLRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA---ETDEKF 132 (254)
Q Consensus 58 ~~~~~~~l~g~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~---~~~~~F 132 (254)
T Consensus 64 g~~~~~i~~gskVLYLGAasGTTVSHvsDiV~~G~VyAVE~spr~~RdL~~-la~~R~NivPIl~DAr~P~~Y~~~v~~V 142 (226)
T PRK04266 64 GLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGRVYAVEFAPRVMRELLL-VAEERKNIIPILGDARKPEEYAHLVEKV 142 (226)
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEEECCHHHHHHHH-HHHHCCCCEEEECCCCCHHHHHHHCCCC
T ss_conf 975567589987999547779848889875179649999827077899999-9850899625754678845644205656
Q ss_pred HHHEECCCHHCCCCH-HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHH
Q ss_conf 130012431026888-8998888752133321577436766024564156554310467899857122538899999999
Q gi|254780872|r 133 DIILNMEVIEHVDNI-PYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLA 211 (254)
Q Consensus 133 D~V~~~~vleHv~d~-~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~ 211 (254)
T Consensus 143 D~i~q-DvAQ--~dQa~I~~~Na~~FLk~gG~~~l~iKA~Sid~-----------t~--~p~----~vf---~~~~~~L~ 199 (226)
T PRK04266 143 DVIYQ-DVAQ--PNQAEIAADNADIFLKPGGYLMLAIKARSIDV-----------TK--DPK----EIF---KEEIKKLE 199 (226)
T ss_pred CEEEE-ECCC--HHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEC-----------CC--CHH----HHH---HHHHHHHH
T ss_conf 58996-0677--42899999999986015988999997423564-----------68--989----999---99999998
Q ss_pred HCCCEEEEEEEEEECCCCCEEEECCCCCCEEEEEEEECC
Q ss_conf 869838885505766777757864788645179999758
Q gi|254780872|r 212 ANKVKIIDRVGVVYNVFCNKWQLSAKNMDVNYMVLGHLP 250 (254)
Q Consensus 212 ~~g~~~~~~~g~~~~p~~~~w~~~~~~~~vnY~~~~~kp 250 (254)
T Consensus 200 ~~~~~~~e~i~--L~py~~-------d---H~~vv~r~~ 226 (226)
T PRK04266 200 EGGFEILEVVD--LEPYHK-------D---HAAVVARKK 226 (226)
T ss_pred HCCCCEEEEEE--CCCCCC-------C---CEEEEEECC
T ss_conf 76996689981--577678-------8---289999669