HHsearch alignment for GI: 254780872 and conserved domain: PRK09489
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional.
Probab=99.29 E-value=1.6e-11 Score=92.08 Aligned_cols=102 Identities=24% Similarity=0.333 Sum_probs=79.9
Q ss_pred HCCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHC-
Q ss_conf 162888569856999999731--98169952135677888865310112111122100123211153013001243102-
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEH- 143 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleH- 143 (254)
T Consensus 197 ~g~VLDlGCG~Gvi~~~la~~~p~~~v~l~Dv~a~Al~~ar~nl~~N~l~~~v~~sd~~~--~v~~~fD~IvsNPPFH~G 274 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLAQHSPKIRLTLCDVSAPAVEASRATLAANGLEGEVFASNVFS--EIKGRFDMIISNPPFHDG 274 (342)
T ss_pred CCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCC--CCCCCCCEEEECCCCCCC
T ss_conf 884786067817999999986999769999688999999999899809886899756445--655678989968852157
Q ss_pred C-CC---HHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 6-88---8899888875213332157743676
Q gi|254780872|r 144 V-DN---IPYFIKTCCSLLLSNGLMFISTINR 171 (254)
Q Consensus 144 v-~d---~~~~l~~~~~~LkpgG~liist~Nr 171 (254)
T Consensus 275 ~~~~~~i~~~fi~~A~~~L~~gG~L~iVA-Nr 305 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVA-NA 305 (342)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEE-CC
T ss_conf 52658999999999998612498899998-18