HHsearch alignment for GI: 254780872 and conserved domain: PRK09489

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional.
Probab=99.29  E-value=1.6e-11  Score=92.08  Aligned_cols=102  Identities=24%  Similarity=0.333  Sum_probs=79.9

Q ss_pred             HCCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHC-
Q ss_conf             162888569856999999731--98169952135677888865310112111122100123211153013001243102-
Q gi|254780872|r   67 GLRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEH-  143 (254)
Q Consensus        67 g~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleH-  143 (254)
T Consensus       197 ~g~VLDlGCG~Gvi~~~la~~~p~~~v~l~Dv~a~Al~~ar~nl~~N~l~~~v~~sd~~~--~v~~~fD~IvsNPPFH~G  274 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLAQHSPKIRLTLCDVSAPAVEASRATLAANGLEGEVFASNVFS--EIKGRFDMIISNPPFHDG  274 (342)
T ss_pred             CCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCC--CCCCCCCEEEECCCCCCC
T ss_conf             884786067817999999986999769999688999999999899809886899756445--655678989968852157


Q ss_pred             C-CC---HHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             6-88---8899888875213332157743676
Q gi|254780872|r  144 V-DN---IPYFIKTCCSLLLSNGLMFISTINR  171 (254)
Q Consensus       144 v-~d---~~~~l~~~~~~LkpgG~liist~Nr  171 (254)
T Consensus       275 ~~~~~~i~~~fi~~A~~~L~~gG~L~iVA-Nr  305 (342)
T PRK09489        275 IQTSLDAAQTLIRGAVRHLNSGGELRIVA-NA  305 (342)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCEEEEEE-CC
T ss_conf             52658999999999998612498899998-18