HHsearch alignment for GI: 254780872 and conserved domain: PRK10901
>PRK10901 16S rRNA methyltransferase B; Provisional.
Probab=98.91 E-value=7.6e-09 Score=75.51 Aligned_cols=107 Identities=20% Similarity=0.245 Sum_probs=80.3
Q ss_pred CCCHHHCCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCHHHHE-
Q ss_conf 588001628885698569999997319--81699521356778888653101121111221001232--1115301300-
Q gi|254780872|r 62 THPFKGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA--ETDEKFDIIL- 136 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~--~~~~~FD~V~- 136 (254)
T Consensus 241 l~p~~g~~VLD~CAaPGGKt~~la~~~~~~~v~A~D~~~~Rl~~l~~n~~Rlg~~~~v~~~d~~~~~~~~~~~~fD~ILl 320 (428)
T PRK10901 241 LAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILL 320 (428)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCEEEE
T ss_conf 49888987987168876689999996458928999698889999999999759973999776557233134456787997
Q ss_pred ---E--CCCHHCCCCH----------------HHHHHHHHHHCCCCCEEEEEC
Q ss_conf ---1--2431026888----------------899888875213332157743
Q gi|254780872|r 137 ---N--MEVIEHVDNI----------------PYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 137 ---~--~~vleHv~d~----------------~~~l~~~~~~LkpgG~liist 168 (254)
T Consensus 321 DaPCSg~G~lrR~Pdikw~~~~~di~~l~~lQ~~iL~~a~~~lk~gG~LvYsT 373 (428)
T PRK10901 321 DAPCSATGVIRRHPDIKWLRRDRDIAELAQLQSEILDAIWPHLKSGGTLVYAT 373 (428)
T ss_pred CCCCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 58988872444685421128999999999999999999998668898899998