HHsearch alignment for GI: 254780872 and conserved domain: PRK11088
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional.
Probab=99.63 E-value=1.3e-14 Score=111.20 Aligned_cols=136 Identities=18% Similarity=0.370 Sum_probs=94.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHC-
Q ss_conf 7898899999999988746888871267751756599999998865187644458800162888569856999999731-
Q gi|254780872|r 9 TTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQM- 87 (254)
Q Consensus 9 ~t~~~~ei~~F~~~a~~WwD~~g~~~~Lh~~N~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~- 87 (254)
T Consensus 47 ~pgDs~~m--v~AR~-~fL-~~G~y~pl~~-------~i~~~~~~~~~~--------~~~~ilD~GCGEGyYl~~l~~~l 107 (272)
T PRK11088 47 DPGDNKEM--MQARR-AFL-DAGHYQPLRD-------AVANLLAERLDE--------KATAILDIGCGEGYYTHALADAL 107 (272)
T ss_pred CCCCCHHH--HHHHH-HHH-HCCCCHHHHH-------HHHHHHHHHCCC--------CCCEEEEECCCCCHHHHHHHHHH
T ss_conf 99976999--99999-999-7688479999-------999999975677--------78648881587778999999974
Q ss_pred ----CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCE
Q ss_conf ----9816995213567788886531011211112210012321115301300124310268888998888752133321
Q gi|254780872|r 88 ----GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGL 163 (254)
Q Consensus 88 ----g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~ 163 (254)
T Consensus 108 ~~~~~~~~~G~DiSK~ai~~Aa----k~~~~~~~~Va~~~~lP~~d~s~D~vl~vFs-------P~~~~Ef~RvLkp~G~ 176 (272)
T PRK11088 108 PEVTTCQLFGLDISKVAIKYAA----KRYPQVTFCVASSHRLPFADQSLDAIIRIYA-------PCKAEELARVVKPGGI 176 (272)
T ss_pred HCCCCCCEEEEECCHHHHHHHH----CCCCCCEEEEEECCCCCCCCCCCEEEEEEEC-------CCCHHHHHHEECCCCE
T ss_conf 1157873799811799999996----2688854999610018887665408999843-------7885886124637978
Q ss_pred EEEECCCCCCH
Q ss_conf 57743676602
Q gi|254780872|r 164 MFISTINRNLK 174 (254)
Q Consensus 164 liist~Nr~~~ 174 (254)
T Consensus 177 li~V~P~~~HL 187 (272)
T PRK11088 177 VITVTPGPRHL 187 (272)
T ss_pred EEEEECCHHHH
T ss_conf 99997888899