HHsearch alignment for GI: 254780872 and conserved domain: PRK11088

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional.
Probab=99.63  E-value=1.3e-14  Score=111.20  Aligned_cols=136  Identities=18%  Similarity=0.370  Sum_probs=94.8

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHC-
Q ss_conf             7898899999999988746888871267751756599999998865187644458800162888569856999999731-
Q gi|254780872|r    9 TTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQM-   87 (254)
Q Consensus         9 ~t~~~~ei~~F~~~a~~WwD~~g~~~~Lh~~N~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~-   87 (254)
T Consensus        47 ~pgDs~~m--v~AR~-~fL-~~G~y~pl~~-------~i~~~~~~~~~~--------~~~~ilD~GCGEGyYl~~l~~~l  107 (272)
T PRK11088         47 DPGDNKEM--MQARR-AFL-DAGHYQPLRD-------AVANLLAERLDE--------KATAILDIGCGEGYYTHALADAL  107 (272)
T ss_pred             CCCCCHHH--HHHHH-HHH-HCCCCHHHHH-------HHHHHHHHHCCC--------CCCEEEEECCCCCHHHHHHHHHH
T ss_conf             99976999--99999-999-7688479999-------999999975677--------78648881587778999999974


Q ss_pred             ----CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCE
Q ss_conf             ----9816995213567788886531011211112210012321115301300124310268888998888752133321
Q gi|254780872|r   88 ----GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGL  163 (254)
Q Consensus        88 ----g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~  163 (254)
T Consensus       108 ~~~~~~~~~G~DiSK~ai~~Aa----k~~~~~~~~Va~~~~lP~~d~s~D~vl~vFs-------P~~~~Ef~RvLkp~G~  176 (272)
T PRK11088        108 PEVTTCQLFGLDISKVAIKYAA----KRYPQVTFCVASSHRLPFADQSLDAIIRIYA-------PCKAEELARVVKPGGI  176 (272)
T ss_pred             HCCCCCCEEEEECCHHHHHHHH----CCCCCCEEEEEECCCCCCCCCCCEEEEEEEC-------CCCHHHHHHEECCCCE
T ss_conf             1157873799811799999996----2688854999610018887665408999843-------7885886124637978


Q ss_pred             EEEECCCCCCH
Q ss_conf             57743676602
Q gi|254780872|r  164 MFISTINRNLK  174 (254)
Q Consensus       164 liist~Nr~~~  174 (254)
T Consensus       177 li~V~P~~~HL  187 (272)
T PRK11088        177 VITVTPGPRHL  187 (272)
T ss_pred             EEEEECCHHHH
T ss_conf             99997888899