HHsearch alignment for GI: 254780872 and conserved domain: PRK11154

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed.
Probab=95.50  E-value=0.13  Score=30.71  Aligned_cols=121  Identities=14%  Similarity=0.063  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCH--HHHHH-HHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-----
Q ss_conf             659999999886518764445880016288856985--69999-9973198169952135677888865310112-----
Q gi|254780872|r   42 VRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGG--GLLSE-PMAQMGATVTGIDPSTKNIAIAKNHANMKNI-----  113 (254)
Q Consensus        42 ~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~--G~~s~-~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~-----  113 (254)
T Consensus       286 Lr~lFfa~~~~kk~~~--~~~~p~~i~kv~ViGaG~MG~gIA~~~a~~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~v~~  363 (706)
T PRK11154        286 LRSIFFATTEMKKETG--SDAPPRPVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKR  363 (706)
T ss_pred             HHHHHHHHHHHCCCCC--CCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999988998625568--88887767679998647323899999999869879999799999999999889999999861


Q ss_pred             -CCCCC--C------CCCCCCCCCCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             -11112--2------10012321115301300124310268888998888752133321577
Q gi|254780872|r  114 -NIDYR--V------SCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFI  166 (254)
Q Consensus       114 -~i~~~--~------~~~~~l~~~~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~lii  166 (254)
T Consensus       364 g~~~~~~~~~~l~~i~~~~~~~-~~~~~DlVIE-Av~E~~~~K~~v~~~le~~~~~~aIlAt  423 (706)
T PRK11154        364 RHMTPAERDKQMALISGTTDYR-GFKHADLVIE-AVFEDLALKQQMVADVEQNCAEHTIFAS  423 (706)
T ss_pred             CCCCHHHHHHHHHCEEEECCHH-HHCCCCEEEE-ECCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             8999899999862241004412-3156887999-7145288899999999964798858950