HHsearch alignment for GI: 254780872 and conserved domain: PRK11154
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed.
Probab=95.50 E-value=0.13 Score=30.71 Aligned_cols=121 Identities=14% Similarity=0.063 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCH--HHHHH-HHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-----
Q ss_conf 659999999886518764445880016288856985--69999-9973198169952135677888865310112-----
Q gi|254780872|r 42 VRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGG--GLLSE-PMAQMGATVTGIDPSTKNIAIAKNHANMKNI----- 113 (254)
Q Consensus 42 ~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~--G~~s~-~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~----- 113 (254)
T Consensus 286 Lr~lFfa~~~~kk~~~--~~~~p~~i~kv~ViGaG~MG~gIA~~~a~~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~v~~ 363 (706)
T PRK11154 286 LRSIFFATTEMKKETG--SDAPPRPVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKR 363 (706)
T ss_pred HHHHHHHHHHHCCCCC--CCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999988998625568--88887767679998647323899999999869879999799999999999889999999861
Q ss_pred -CCCCC--C------CCCCCCCCCCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf -11112--2------10012321115301300124310268888998888752133321577
Q gi|254780872|r 114 -NIDYR--V------SCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 114 -~i~~~--~------~~~~~l~~~~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~lii 166 (254)
T Consensus 364 g~~~~~~~~~~l~~i~~~~~~~-~~~~~DlVIE-Av~E~~~~K~~v~~~le~~~~~~aIlAt 423 (706)
T PRK11154 364 RHMTPAERDKQMALISGTTDYR-GFKHADLVIE-AVFEDLALKQQMVADVEQNCAEHTIFAS 423 (706)
T ss_pred CCCCHHHHHHHHHCEEEECCHH-HHCCCCEEEE-ECCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 8999899999862241004412-3156887999-7145288899999999964798858950