HHsearch alignment for GI: 254780872 and conserved domain: PRK11783
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional.
Probab=98.80 E-value=1.7e-08 Score=73.32 Aligned_cols=103 Identities=24% Similarity=0.292 Sum_probs=82.4
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCC-EEEECCHHHHHHHHHHHHHCCCCCC---CCCCCCCCC-CCCCCCCHHHHEE---
Q ss_conf 0162888569856999999731981-6995213567788886531011211---112210012-3211153013001---
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGAT-VTGIDPSTKNIAIAKNHANMKNINI---DYRVSCAEE-IAETDEKFDIILN--- 137 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~-V~giD~S~~~i~~Ak~~a~~~~~~i---~~~~~~~~~-l~~~~~~FD~V~~--- 137 (254)
T Consensus 552 ~gk~fLNLF~YTgt~sv~Aa~gGA~~t~sVD~S~tyl~Wa~~N~~lN~~~~~~h~~v~aD~~~wl~~~~~~fDli~~DPP 631 (716)
T PRK11783 552 KGKRFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRFIQADCLAWLKEAREQFDLIFIDPP 631 (716)
T ss_pred CCCCEEEEEECCCCEEHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHCCCCCCEEEECCC
T ss_conf 78846431222561021335279612278627087999999999854999634738964089999857776678998899
Q ss_pred --------CCCHHCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf --------2431026888899888875213332157743
Q gi|254780872|r 138 --------MEVIEHVDNIPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 138 --------~~vleHv~d~~~~l~~~~~~LkpgG~liist 168 (254)
T Consensus 632 tFSnSk~m~~~~dvqrDh~~li~~~~~~L~~~G~l~FS~ 670 (716)
T PRK11783 632 TFSNSKRMEDSFDVQRDHVALIKLAMRLLRPGGTLYFSN 670 (716)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 998766678863220309999999998608996899962