HHsearch alignment for GI: 254780872 and conserved domain: PRK11783

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional.
Probab=94.04  E-value=0.27  Score=28.73  Aligned_cols=82  Identities=11%  Similarity=0.124  Sum_probs=55.0

Q ss_pred             CEEEECCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCC--CCHHHHEECC----CHHCCCCHHHHHHHHHHHCCC-
Q ss_conf             1699521356778888653101121--111221001232111--5301300124----310268888998888752133-
Q gi|254780872|r   90 TVTGIDPSTKNIAIAKNHANMKNIN--IDYRVSCAEEIAETD--EKFDIILNME----VIEHVDNIPYFIKTCCSLLLS-  160 (254)
Q Consensus        90 ~V~giD~S~~~i~~Ak~~a~~~~~~--i~~~~~~~~~l~~~~--~~FD~V~~~~----vleHv~d~~~~l~~~~~~Lkp-  160 (254)
T Consensus       262 ~i~G~D~D~~ai~~Ar~Na~~AGv~~~I~f~~~d~~~l~~p~~~~~~Gliv~NPPYGERLge~~~L~~LY~~lG~~lK~~  341 (716)
T PRK11783        262 KFYGSDIDPRVIQAARRNARRAGVEELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKKQ  341 (716)
T ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCEEEECCCHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             18999599899999999999819988629995678985798777898289967852201366146899999999999965


Q ss_pred             -CC-EEEEECCCC
Q ss_conf             -32-157743676
Q gi|254780872|r  161 -NG-LMFISTINR  171 (254)
Q Consensus       161 -gG-~liist~Nr  171 (254)
T Consensus       342 f~GW~~~ilT~~~  354 (716)
T PRK11783        342 FGGWNAALFSSSP  354 (716)
T ss_pred             CCCCEEEEEECCH
T ss_conf             8998699997888