HHsearch alignment for GI: 254780872 and conserved domain: PRK11783
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional.
Probab=94.04 E-value=0.27 Score=28.73 Aligned_cols=82 Identities=11% Similarity=0.124 Sum_probs=55.0
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCC--CCHHHHEECC----CHHCCCCHHHHHHHHHHHCCC-
Q ss_conf 1699521356778888653101121--111221001232111--5301300124----310268888998888752133-
Q gi|254780872|r 90 TVTGIDPSTKNIAIAKNHANMKNIN--IDYRVSCAEEIAETD--EKFDIILNME----VIEHVDNIPYFIKTCCSLLLS- 160 (254)
Q Consensus 90 ~V~giD~S~~~i~~Ak~~a~~~~~~--i~~~~~~~~~l~~~~--~~FD~V~~~~----vleHv~d~~~~l~~~~~~Lkp- 160 (254)
T Consensus 262 ~i~G~D~D~~ai~~Ar~Na~~AGv~~~I~f~~~d~~~l~~p~~~~~~Gliv~NPPYGERLge~~~L~~LY~~lG~~lK~~ 341 (716)
T PRK11783 262 KFYGSDIDPRVIQAARRNARRAGVEELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKKQ 341 (716)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCEEEECCCHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 18999599899999999999819988629995678985798777898289967852201366146899999999999965
Q ss_pred -CC-EEEEECCCC
Q ss_conf -32-157743676
Q gi|254780872|r 161 -NG-LMFISTINR 171 (254)
Q Consensus 161 -gG-~liist~Nr 171 (254)
T Consensus 342 f~GW~~~ilT~~~ 354 (716)
T PRK11783 342 FGGWNAALFSSSP 354 (716)
T ss_pred CCCCEEEEEECCH
T ss_conf 8998699997888