HHsearch alignment for GI: 254780872 and conserved domain: PRK11933

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed.
Probab=98.27  E-value=2.6e-06  Score=59.83  Aligned_cols=106  Identities=16%  Similarity=0.203  Sum_probs=71.9

Q ss_pred             CCHHHCCEEEECCCHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCC-CCCCHHHHE-
Q ss_conf             8800162888569856999999731---98169952135677888865310112-11112210012321-115301300-
Q gi|254780872|r   63 HPFKGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAE-TDEKFDIIL-  136 (254)
Q Consensus        63 ~~l~g~~VLDiGCG~G~~s~~la~~---g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~-~~~~FD~V~-  136 (254)
T Consensus       110 ~p~pge~VLDlCAAPGGKtt~la~~m~~~G~lvAnd~~~~R~~~L~~n~~r~G~~n~~vt~~d~~~~~~~~~~~FD~ILv  189 (471)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGALVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPEMFDAILL  189 (471)
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEE
T ss_conf             88999989995778548999999975899669998388999999999999719984799935866740323010667998


Q ss_pred             ---EC--CCHHCCCC----------------HHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             ---12--43102688----------------8899888875213332157743
Q gi|254780872|r  137 ---NM--EVIEHVDN----------------IPYFIKTCCSLLLSNGLMFIST  168 (254)
Q Consensus       137 ---~~--~vleHv~d----------------~~~~l~~~~~~LkpgG~liist  168 (254)
T Consensus       190 DaPCSG~G~~rk~p~~~~~w~~~~~~~~~~~Q~~iL~~A~~~LkpGG~LVYST  242 (471)
T PRK11933        190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST  242 (471)
T ss_pred             CCCCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             78888873355597576418987999999999999999998738896899981