HHsearch alignment for GI: 254780872 and conserved domain: PRK13168

>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed.
Probab=98.99  E-value=1.2e-08  Score=74.29  Aligned_cols=123  Identities=20%  Similarity=0.264  Sum_probs=87.1

Q ss_pred             HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCC-C---CCCCCHHHHEECCC
Q ss_conf             016288856985699999973198169952135677888865310112-111122100123-2---11153013001243
Q gi|254780872|r   66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEI-A---ETDEKFDIILNMEV  140 (254)
Q Consensus        66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l-~---~~~~~FD~V~~~~v  140 (254)
T Consensus       294 ~~~~VlDLYcGvGtfsl~LA~~~~~V~gvE~~~~av~~A~~Na~~n~i~n~~f~~~d~~~~l~~~~~~~~~~D~vi~---  370 (440)
T PRK13168        294 PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVPAMVERARENARRNGLDNVTFYHANLFEDFTDQPWAKGGFDKVLL---  370 (440)
T ss_pred             CCCEEEEEECCCCCCCHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEE---
T ss_conf             89889986238562111135306768876057999999999999749998789974645663557863799998999---


Q ss_pred             HHCCCCH-----HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCC
Q ss_conf             1026888-----89988887521333215774367660245641565543104678998571225388999999998698
Q gi|254780872|r  141 IEHVDNI-----PYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKV  215 (254)
Q Consensus       141 leHv~d~-----~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~  215 (254)
T Consensus       371 -----DPPR~G~~~~i~~l~~-~~p~~IvYVSC---nPaTl--------------------------ARDl~~-L~~~GY  414 (440)
T PRK13168        371 -----DPPRAGAFEVMQALAK-LKPKRIVYVSC---NPATL--------------------------ARDAGV-LVEAGY  414 (440)
T ss_pred             -----CCCCCCHHHHHHHHHH-CCCCEEEEECC---CHHHH--------------------------HHHHHH-HHHCCC
T ss_conf             -----9885278999999984-79897999938---98999--------------------------999999-987894


Q ss_pred             EEEEEEEEEECC
Q ss_conf             388855057667
Q gi|254780872|r  216 KIIDRVGVVYNV  227 (254)
Q Consensus       216 ~~~~~~g~~~~p  227 (254)
T Consensus       415 ~l~~i~~vDmFP  426 (440)
T PRK13168        415 RLKRAGVLDMFP  426 (440)
T ss_pred             EEEEEEEEECCC
T ss_conf             895999960699