HHsearch alignment for GI: 254780872 and conserved domain: PRK13168
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed.
Probab=98.99 E-value=1.2e-08 Score=74.29 Aligned_cols=123 Identities=20% Similarity=0.264 Sum_probs=87.1
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCC-C---CCCCCHHHHEECCC
Q ss_conf 016288856985699999973198169952135677888865310112-111122100123-2---11153013001243
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEI-A---ETDEKFDIILNMEV 140 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l-~---~~~~~FD~V~~~~v 140 (254)
T Consensus 294 ~~~~VlDLYcGvGtfsl~LA~~~~~V~gvE~~~~av~~A~~Na~~n~i~n~~f~~~d~~~~l~~~~~~~~~~D~vi~--- 370 (440)
T PRK13168 294 PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVPAMVERARENARRNGLDNVTFYHANLFEDFTDQPWAKGGFDKVLL--- 370 (440)
T ss_pred CCCEEEEEECCCCCCCHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEE---
T ss_conf 89889986238562111135306768876057999999999999749998789974645663557863799998999---
Q ss_pred HHCCCCH-----HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCC
Q ss_conf 1026888-----89988887521333215774367660245641565543104678998571225388999999998698
Q gi|254780872|r 141 IEHVDNI-----PYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKV 215 (254)
Q Consensus 141 leHv~d~-----~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~ 215 (254)
T Consensus 371 -----DPPR~G~~~~i~~l~~-~~p~~IvYVSC---nPaTl--------------------------ARDl~~-L~~~GY 414 (440)
T PRK13168 371 -----DPPRAGAFEVMQALAK-LKPKRIVYVSC---NPATL--------------------------ARDAGV-LVEAGY 414 (440)
T ss_pred -----CCCCCCHHHHHHHHHH-CCCCEEEEECC---CHHHH--------------------------HHHHHH-HHHCCC
T ss_conf -----9885278999999984-79897999938---98999--------------------------999999-987894
Q ss_pred EEEEEEEEEECC
Q ss_conf 388855057667
Q gi|254780872|r 216 KIIDRVGVVYNV 227 (254)
Q Consensus 216 ~~~~~~g~~~~p 227 (254)
T Consensus 415 ~l~~i~~vDmFP 426 (440)
T PRK13168 415 RLKRAGVLDMFP 426 (440)
T ss_pred EEEEEEEEECCC
T ss_conf 895999960699