HHsearch alignment for GI: 254780872 and conserved domain: PRK13341

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=95.81  E-value=0.18  Score=29.83  Aligned_cols=162  Identities=14%  Similarity=0.138  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHHCCCC-CCCCC
Q ss_conf             599999998865187644458800162888569856999999731---98169952135677888865310112-11112
Q gi|254780872|r   43 RIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNI-NIDYR  118 (254)
Q Consensus        43 R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~---g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~  118 (254)
T Consensus       476 ~l~~~~~rl~~~~~~q-------r~~~vl~l~~~sll~~~~~l~~~peggv~~~~~~~~~~~rL~aQl~lLdpL~RP~Ll  548 (726)
T PRK13341        476 RLRILRDRLWSGITWQ-------RHDRVLNLANRSLLWALEPLRAVPEGGVTVLCESSDDIVRLEAQLDLLDPLGRPVLL  548 (726)
T ss_pred             HHHHHHHHHHCCCCCC-------CCCEEEEECCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCHHCCCCEE
T ss_conf             9999999984336656-------343599833851265267786189986699837888999999998746811197112


Q ss_pred             CCCCCCCC--CCCCCHHHHEECCCHHCCCCHH--HHHHHHHHHCCCCCEEEE--ECCCCCCHHHHH-----------HHH
Q ss_conf             21001232--1115301300124310268888--998888752133321577--436766024564-----------156
Q gi|254780872|r  119 VSCAEEIA--ETDEKFDIILNMEVIEHVDNIP--YFIKTCCSLLLSNGLMFI--STINRNLKAMLL-----------AII  181 (254)
Q Consensus       119 ~~~~~~l~--~~~~~FD~V~~~~vleHv~d~~--~~l~~~~~~LkpgG~lii--st~Nr~~~s~~~-----------~i~  181 (254)
T Consensus       549 ~~~~~~l~~L~~~~~FE~IgGR~~~~~l~~~~~~~~~q~L~~~l~p~g~l~Ll~S~P~~Gpa~all~~~~~~~~~l~~L~  628 (726)
T PRK13341        549 DAGLLALKYLPANLQFEWIGGRNGLDDLLYKADEELWQQLTEKLTPNGGLRLLISQPEAGPALALLLKAPVEDKLLSALL  628 (726)
T ss_pred             ECCCHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCCCHHHHHHHHH
T ss_conf             16711465379876424783332002342256999999999865998669986357764807887356940489999999


Q ss_pred             HHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEE
Q ss_conf             554310467899857122538899999999869838885
Q gi|254780872|r  182 GAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDR  220 (254)
Q Consensus       182 ~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~  220 (254)
T Consensus       629 ~aEe--~wl~~~-------~~~~~Lqq~le~~gwsl~~e  658 (726)
T PRK13341        629 EAEE--LWLKSQ-------SMPALLQQQLEEAGWSLGIE  658 (726)
T ss_pred             HHHH--HHHHCC-------CCHHHHHHHHHHCCCCCEEE
T ss_conf             9999--996268-------88599999999748845351