HHsearch alignment for GI: 254780872 and conserved domain: TIGR00080

>TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process.
Probab=98.56  E-value=8.9e-08  Score=68.90  Aligned_cols=95  Identities=18%  Similarity=0.260  Sum_probs=71.1

Q ss_pred             HHCCEEEECCCHHHHHHHHHHCCC---CEEEECCHHHHHHHHHHHHHC-----CCC-CCCCCCCCCCCCCCCCCCHHHHE
Q ss_conf             016288856985699999973198---169952135677888865310-----112-11112210012321115301300
Q gi|254780872|r   66 KGLRILDLGCGGGLLSEPMAQMGA---TVTGIDPSTKNIAIAKNHANM-----KNI-NIDYRVSCAEEIAETDEKFDIIL  136 (254)
Q Consensus        66 ~g~~VLDiGCG~G~~s~~la~~g~---~V~giD~S~~~i~~Ak~~a~~-----~~~-~i~~~~~~~~~l~~~~~~FD~V~  136 (254)
T Consensus        82 ~~~~vLeiG~GSGY~aavlA~~v~~~G~V~SiEri~~L~~~A~~~Lk~hhseqL~~~NV~v~~GDG~~G~~~~APYd~I~  161 (228)
T TIGR00080        82 PGAKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELVEKARRRLKKHHSEQLGLDNVIVIEGDGRQGWEEKAPYDAIL  161 (228)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCEEE
T ss_conf             03556650478558999999987139718998535788999998765431444068865899778865710248835277


Q ss_pred             ECCCHHCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             124310268888998888752133321577
Q gi|254780872|r  137 NMEVIEHVDNIPYFIKTCCSLLLSNGLMFI  166 (254)
Q Consensus       137 ~~~vleHv~d~~~~l~~~~~~LkpgG~lii  166 (254)
T Consensus       162 ~~AA~------k~iP~AL~~QL~eGG~L~~  185 (228)
T TIGR00080       162 VTAAA------KEIPKALIDQLEEGGILVL  185 (228)
T ss_pred             EECCC------CCCCHHHHHHHHHCCEEEE
T ss_conf             52378------9876578999972898862