HHsearch alignment for GI: 254780872 and conserved domain: TIGR00406

>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=99.61  E-value=1.5e-15  Score=117.11  Aligned_cols=124  Identities=22%  Similarity=0.376  Sum_probs=96.1

Q ss_pred             HHH--CCEEEECCCHHHHHHHHHHCCC-CEEEECCHHHHHHHHHHHHHCCCCCCC---CCC-CCCCCCCCCCCCHHHHEE
Q ss_conf             001--6288856985699999973198-169952135677888865310112111---122-100123211153013001
Q gi|254780872|r   65 FKG--LRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNINID---YRV-SCAEEIAETDEKFDIILN  137 (254)
Q Consensus        65 l~g--~~VLDiGCG~G~~s~~la~~g~-~V~giD~S~~~i~~Ak~~a~~~~~~i~---~~~-~~~~~l~~~~~~FD~V~~  137 (254)
T Consensus       193 ~k~kh~~viD~GCGSGIL~IAa~~LGa~~~~g~D~DP~Ave~~r~N~~lN~v~~~~~~~~~~~vPe~~~~~e~~~DViVA  272 (330)
T TIGR00406       193 LKDKHKKVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLENSVPELEQPIEGKADVIVA  272 (330)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEE
T ss_conf             77766547871267178999999751231122137728999999768745886457643205787534532256675788


Q ss_pred             CCCHHCCCCH-HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCE
Q ss_conf             2431026888-899888875213332157743676602456415655431046789985712253889999999986983
Q gi|254780872|r  138 MEVIEHVDNI-PYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVK  216 (254)
Q Consensus       138 ~~vleHv~d~-~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~  216 (254)
T Consensus       273 N-i---LA~vi~~L~p~~~~L~~~~G~lilSGI--------------------l~--~-------~~~sV~~ay~q~GF~  319 (330)
T TIGR00406       273 N-I---LAEVIKELYPQFSRLVKPGGHLILSGI--------------------LE--T-------QAQSVCEAYEQAGFT  319 (330)
T ss_pred             C-C---HHHHHHHHHHHHHHHCCCCCCEEEHHH--------------------HH--H-------HHHHHHHHHHCCCCE
T ss_conf             0-0---245787641355131068996574134--------------------76--4-------799999998557946


Q ss_pred             EEEEE
Q ss_conf             88855
Q gi|254780872|r  217 IIDRV  221 (254)
Q Consensus       217 ~~~~~  221 (254)
T Consensus       320 ~~~~~  324 (330)
T TIGR00406       320 VVEIL  324 (330)
T ss_pred             EHHHH
T ss_conf             34346