HHsearch alignment for GI: 254780872 and conserved domain: TIGR00417
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=97.89 E-value=2.3e-05 Score=53.91 Aligned_cols=146 Identities=16% Similarity=0.241 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCC------C
Q ss_conf 65999999988651876444588001628885698569999997319--816995213567788886531011------2
Q gi|254780872|r 42 VRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKN------I 113 (254)
Q Consensus 42 ~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~------~ 113 (254)
T Consensus 55 E~DEF~YhEMi~HvpL~~H~----NPk~VLvIGGGDGG~lREV~KH~sVE~~~lVdID~~VI~~srkyLP~~~~g~~dde 130 (284)
T TIGR00417 55 ERDEFIYHEMIAHVPLFAHP----NPKKVLVIGGGDGGVLREVVKHKSVEKATLVDIDEKVIELSRKYLPKLAAGSFDDE 130 (284)
T ss_pred CCCCHHHHHHHHHHHHHCCC----CCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHHCHHHHCCCCCCC
T ss_conf 25443567899875653689----88547899638884687887559816799997274789998882612105665888
Q ss_pred CCCCCCCCCC-CCCCC-----CCCHHHHEECCCHHCCCCH---------HHHHHHHHHHCCCCCEEEEE-CCCCCCHHHH
Q ss_conf 1111221001-23211-----1530130012431026888---------89988887521333215774-3676602456
Q gi|254780872|r 114 NIDYRVSCAE-EIAET-----DEKFDIILNMEVIEHVDNI---------PYFIKTCCSLLLSNGLMFIS-TINRNLKAML 177 (254)
Q Consensus 114 ~i~~~~~~~~-~l~~~-----~~~FD~V~~~~vleHv~d~---------~~~l~~~~~~LkpgG~liis-t~Nr~~~s~~ 177 (254)
T Consensus 131 rv~~~i~DG~~fl~~~Gasdv~~~fDVIIvD-----stDPvGPa~~LF~~~Fy~~~~~aL~~~Gv~v~Qss~s--~---- 199 (284)
T TIGR00417 131 RVDLAIDDGFKFLRDTGASDVEKKFDVIIVD-----STDPVGPAETLFTKEFYELLKKALNEDGVIVAQSSES--P---- 199 (284)
T ss_pred EEEEEECCCHHHHHHCCCCCCCCCCCEEEEE-----CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC--C----
T ss_conf 0358982517989761522221214479972-----7789565541021799999998529998899802788--4----
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 41565543104678998571225388999999998698388855
Q gi|254780872|r 178 LAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRV 221 (254)
Q Consensus 178 ~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~ 221 (254)
T Consensus 200 -----------~~~------~~~~--~d~~r~~~~~~F~~~~~y 224 (284)
T TIGR00417 200 -----------WLQ------LELI--KDLKRKVKEVPFPITEYY 224 (284)
T ss_pred -----------CCC------HHHH--HHHHHHHHHCCCCCCEEE
T ss_conf -----------327------4888--878887752689753046