HHsearch alignment for GI: 254780872 and conserved domain: TIGR00417

>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=97.89  E-value=2.3e-05  Score=53.91  Aligned_cols=146  Identities=16%  Similarity=0.241  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCC------C
Q ss_conf             65999999988651876444588001628885698569999997319--816995213567788886531011------2
Q gi|254780872|r   42 VRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKN------I  113 (254)
Q Consensus        42 ~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~------~  113 (254)
T Consensus        55 E~DEF~YhEMi~HvpL~~H~----NPk~VLvIGGGDGG~lREV~KH~sVE~~~lVdID~~VI~~srkyLP~~~~g~~dde  130 (284)
T TIGR00417        55 ERDEFIYHEMIAHVPLFAHP----NPKKVLVIGGGDGGVLREVVKHKSVEKATLVDIDEKVIELSRKYLPKLAAGSFDDE  130 (284)
T ss_pred             CCCCHHHHHHHHHHHHHCCC----CCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHHCHHHHCCCCCCC
T ss_conf             25443567899875653689----88547899638884687887559816799997274789998882612105665888


Q ss_pred             CCCCCCCCCC-CCCCC-----CCCHHHHEECCCHHCCCCH---------HHHHHHHHHHCCCCCEEEEE-CCCCCCHHHH
Q ss_conf             1111221001-23211-----1530130012431026888---------89988887521333215774-3676602456
Q gi|254780872|r  114 NIDYRVSCAE-EIAET-----DEKFDIILNMEVIEHVDNI---------PYFIKTCCSLLLSNGLMFIS-TINRNLKAML  177 (254)
Q Consensus       114 ~i~~~~~~~~-~l~~~-----~~~FD~V~~~~vleHv~d~---------~~~l~~~~~~LkpgG~liis-t~Nr~~~s~~  177 (254)
T Consensus       131 rv~~~i~DG~~fl~~~Gasdv~~~fDVIIvD-----stDPvGPa~~LF~~~Fy~~~~~aL~~~Gv~v~Qss~s--~----  199 (284)
T TIGR00417       131 RVDLAIDDGFKFLRDTGASDVEKKFDVIIVD-----STDPVGPAETLFTKEFYELLKKALNEDGVIVAQSSES--P----  199 (284)
T ss_pred             EEEEEECCCHHHHHHCCCCCCCCCCCEEEEE-----CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC--C----
T ss_conf             0358982517989761522221214479972-----7789565541021799999998529998899802788--4----


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf             41565543104678998571225388999999998698388855
Q gi|254780872|r  178 LAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRV  221 (254)
Q Consensus       178 ~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~  221 (254)
T Consensus       200 -----------~~~------~~~~--~d~~r~~~~~~F~~~~~y  224 (284)
T TIGR00417       200 -----------WLQ------LELI--KDLKRKVKEVPFPITEYY  224 (284)
T ss_pred             -----------CCC------HHHH--HHHHHHHHHCCCCCCEEE
T ss_conf             -----------327------4888--878887752689753046