HHsearch alignment for GI: 254780872 and conserved domain: TIGR00438
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=98.14 E-value=6.1e-06 Score=57.50 Aligned_cols=113 Identities=18% Similarity=0.279 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCC---CEEEECCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 5659999999886518764445880016288856985699999973198---1699521356778888653101121111
Q gi|254780872|r 41 PVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGA---TVTGIDPSTKNIAIAKNHANMKNINIDY 117 (254)
Q Consensus 41 ~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~---~V~giD~S~~~i~~Ak~~a~~~~~~i~~ 117 (254)
T Consensus 13 RSRA~fKL~qln~~~kLi------k~G~~VlDLGAAPGGWsQva~~~~G~kG~ViA~Dl~~~--------k~FP~~nv~f 78 (192)
T TIGR00438 13 RSRASFKLLQLNQKFKLI------KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM--------KGFPIENVDF 78 (192)
T ss_pred CHHHHHHHHHHCCCCCCE------ECCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCC--------CCCCCCCEEE
T ss_conf 016678999850215611------07886786578987387788776068533899854557--------8856466147
Q ss_pred CCCCCCC----------CCCCCCCHHHHEE------C--CCHHCCC--C-HHHHHHHHHHHCCCCCEEEEE
Q ss_conf 2210012----------3211153013001------2--4310268--8-889988887521333215774
Q gi|254780872|r 118 RVSCAEE----------IAETDEKFDIILN------M--EVIEHVD--N-IPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 118 ~~~~~~~----------l~~~~~~FD~V~~------~--~vleHv~--d-~~~~l~~~~~~LkpgG~liis 167 (254)
T Consensus 79 i~GDftdee~l~ki~~~~g~dekk~DVV~SDaaP~~SG~~~iDh~Rs~dLv~~aL~ia~~vL~~~GnfvvK 149 (192)
T TIGR00438 79 IRGDFTDEEVLNKILERVGDDEKKVDVVMSDAAPNISGIWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 149 (192)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 54476787899999985789874377898526888789875434437999999999999986158989999