HHsearch alignment for GI: 254780872 and conserved domain: TIGR00478
>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.
Probab=96.03 E-value=0.0096 Score=37.67 Aligned_cols=159 Identities=16% Similarity=0.199 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCC-CEEEECCHHHHHHHH-HHHHH---CCCCCCC-
Q ss_conf 59999999886518764445880016288856985699999973198-169952135677888-86531---0112111-
Q gi|254780872|r 43 RIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIA-KNHAN---MKNINID- 116 (254)
Q Consensus 43 R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~-~V~giD~S~~~i~~A-k~~a~---~~~~~i~- 116 (254)
T Consensus 60 RGG~KL~~~L~~F~~~------vk~ki~lD~GsS~GGFtd~aL~~GAk~VY~vDVG~~ql~~kLR~D~Rv~~~eR~N~rG 133 (240)
T TIGR00478 60 RGGEKLKEALEEFEVD------VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRG 133 (240)
T ss_pred CHHHHHHHHCCCCCEE------ECCEEEEEECCCCCHHHHHHHHCCCCEEEEEEECCHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 0458999853543313------3786899705673048999987058467778603213343236366268964578744
Q ss_pred CC-CCCCC-CCCCC-CCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEEC-CC----C-CCHH-HHHHHH-HHHH
Q ss_conf 12-21001-23211-1530130012431026888899888875213332157743-67----6-6024-564156-5543
Q gi|254780872|r 117 YR-VSCAE-EIAET-DEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIST-IN----R-NLKA-MLLAII-GAEY 185 (254)
Q Consensus 117 ~~-~~~~~-~l~~~-~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist-~N----r-~~~s-~~~~i~-~ae~ 185 (254)
T Consensus 134 y~T~~d~~~~qP~P~lA~~DvSFiS--------l~~il~~L~~lL~P~~~~~~L~kPqFe~~R~nl~~~~kkGvV~d~~~ 205 (240)
T TIGR00478 134 YVTPADIVKDQPMPDLAVVDVSFIS--------LISILPELLLLLNPDNDLLLLVKPQFEVGRLNLEKKNKKGVVRDKEA 205 (240)
T ss_pred CCCHHHHHCCCCCCCHHHHHHHHHH--------HHHHHHHHHHHHCCCCEEEEEECCCCEEEECCEEEECCCCCEECHHH
T ss_conf 4665654078889731444457887--------99999988875088960788507752333022311157770115589
Q ss_pred HCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCE
Q ss_conf 1046789985712253889999999986983888550576677775
Q gi|254780872|r 186 LLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNK 231 (254)
Q Consensus 186 il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~g~~~~p~~~~ 231 (254)
T Consensus 206 ~~-----------~~l--~~~~~~~~~~~~~~~~~~---~s~~~G~ 235 (240)
T TIGR00478 206 IA-----------EAL--EKVIEKGESKDFQVKKIL---FSLIKGK 235 (240)
T ss_pred HH-----------HHH--HHHHHHHCCCCCEEEEEE---ECCCCCC
T ss_conf 99-----------999--999873215784121022---0553088