HHsearch alignment for GI: 254780872 and conserved domain: TIGR00478

>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.
Probab=96.03  E-value=0.0096  Score=37.67  Aligned_cols=159  Identities=16%  Similarity=0.199  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCC-CEEEECCHHHHHHHH-HHHHH---CCCCCCC-
Q ss_conf             59999999886518764445880016288856985699999973198-169952135677888-86531---0112111-
Q gi|254780872|r   43 RIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIA-KNHAN---MKNINID-  116 (254)
Q Consensus        43 R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~-~V~giD~S~~~i~~A-k~~a~---~~~~~i~-  116 (254)
T Consensus        60 RGG~KL~~~L~~F~~~------vk~ki~lD~GsS~GGFtd~aL~~GAk~VY~vDVG~~ql~~kLR~D~Rv~~~eR~N~rG  133 (240)
T TIGR00478        60 RGGEKLKEALEEFEVD------VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRG  133 (240)
T ss_pred             CHHHHHHHHCCCCCEE------ECCEEEEEECCCCCHHHHHHHHCCCCEEEEEEECCHHHHHHCCCCCEEEEEECCCCCC
T ss_conf             0458999853543313------3786899705673048999987058467778603213343236366268964578744


Q ss_pred             CC-CCCCC-CCCCC-CCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEEC-CC----C-CCHH-HHHHHH-HHHH
Q ss_conf             12-21001-23211-1530130012431026888899888875213332157743-67----6-6024-564156-5543
Q gi|254780872|r  117 YR-VSCAE-EIAET-DEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIST-IN----R-NLKA-MLLAII-GAEY  185 (254)
Q Consensus       117 ~~-~~~~~-~l~~~-~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist-~N----r-~~~s-~~~~i~-~ae~  185 (254)
T Consensus       134 y~T~~d~~~~qP~P~lA~~DvSFiS--------l~~il~~L~~lL~P~~~~~~L~kPqFe~~R~nl~~~~kkGvV~d~~~  205 (240)
T TIGR00478       134 YVTPADIVKDQPMPDLAVVDVSFIS--------LISILPELLLLLNPDNDLLLLVKPQFEVGRLNLEKKNKKGVVRDKEA  205 (240)
T ss_pred             CCCHHHHHCCCCCCCHHHHHHHHHH--------HHHHHHHHHHHHCCCCEEEEEECCCCEEEECCEEEECCCCCEECHHH
T ss_conf             4665654078889731444457887--------99999988875088960788507752333022311157770115589


Q ss_pred             HCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCE
Q ss_conf             1046789985712253889999999986983888550576677775
Q gi|254780872|r  186 LLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNK  231 (254)
Q Consensus       186 il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~g~~~~p~~~~  231 (254)
T Consensus       206 ~~-----------~~l--~~~~~~~~~~~~~~~~~~---~s~~~G~  235 (240)
T TIGR00478       206 IA-----------EAL--EKVIEKGESKDFQVKKIL---FSLIKGK  235 (240)
T ss_pred             HH-----------HHH--HHHHHHHCCCCCEEEEEE---ECCCCCC
T ss_conf             99-----------999--999873215784121022---0553088