HHsearch alignment for GI: 254780872 and conserved domain: TIGR01177
>TIGR01177 TIGR01177 conserved hypothetical protein TIGR01177; InterPro: IPR005885 This family of largely hypothetical proteins is found exclusively in the Archaea and contain a putative RNA methylase domain..
Probab=94.61 E-value=0.038 Score=33.96 Aligned_cols=107 Identities=19% Similarity=0.174 Sum_probs=78.2
Q ss_pred HHHCCEEEECCCHHHHHHHHHHCCCCEEEE-CCHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCCC--C--CCHHHHE
Q ss_conf 001628885698569999997319816995-213567788886531011211---1122100123211--1--5301300
Q gi|254780872|r 65 FKGLRILDLGCGGGLLSEPMAQMGATVTGI-DPSTKNIAIAKNHANMKNINI---DYRVSCAEEIAET--D--EKFDIIL 136 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s~~la~~g~~V~gi-D~S~~~i~~Ak~~a~~~~~~i---~~~~~~~~~l~~~--~--~~FD~V~ 136 (254)
T Consensus 202 ~~g~~~~dp~~g~gg~~~~~gl~g~~~~g~gd~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (358)
T TIGR01177 202 KEGDRLLDPFCGTGGFLIEAGLLGAKPIGCGDLDWKLVEGARLNLEHYGIEDKVFSVKRGDAKDLPLRLPGLDESVDAIA 281 (358)
T ss_pred CCCCCEECCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCHHCCCCCCCCHHHHHHHH
T ss_conf 46751004222666033233332110002440356764252111333055431567640330011100353101122221
Q ss_pred ECCC-------HHC-CC-CHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 1243-------102-68-88899888875213332157743676
Q gi|254780872|r 137 NMEV-------IEH-VD-NIPYFIKTCCSLLLSNGLMFISTINR 171 (254)
Q Consensus 137 ~~~v-------leH-v~-d~~~~l~~~~~~LkpgG~liist~Nr 171 (254)
T Consensus 282 ~d~p~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~ 325 (358)
T TIGR01177 282 TDPPYGRSTTAAGDGLEELYEKSLEELHEVLKGGGWLAVAVPTD 325 (358)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 25654531112210368888888888888642687179974033