HHsearch alignment for GI: 254780872 and conserved domain: TIGR01177

>TIGR01177 TIGR01177 conserved hypothetical protein TIGR01177; InterPro: IPR005885 This family of largely hypothetical proteins is found exclusively in the Archaea and contain a putative RNA methylase domain..
Probab=94.61  E-value=0.038  Score=33.96  Aligned_cols=107  Identities=19%  Similarity=0.174  Sum_probs=78.2

Q ss_pred             HHHCCEEEECCCHHHHHHHHHHCCCCEEEE-CCHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCCC--C--CCHHHHE
Q ss_conf             001628885698569999997319816995-213567788886531011211---1122100123211--1--5301300
Q gi|254780872|r   65 FKGLRILDLGCGGGLLSEPMAQMGATVTGI-DPSTKNIAIAKNHANMKNINI---DYRVSCAEEIAET--D--EKFDIIL  136 (254)
Q Consensus        65 l~g~~VLDiGCG~G~~s~~la~~g~~V~gi-D~S~~~i~~Ak~~a~~~~~~i---~~~~~~~~~l~~~--~--~~FD~V~  136 (254)
T Consensus       202 ~~g~~~~dp~~g~gg~~~~~gl~g~~~~g~gd~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (358)
T TIGR01177       202 KEGDRLLDPFCGTGGFLIEAGLLGAKPIGCGDLDWKLVEGARLNLEHYGIEDKVFSVKRGDAKDLPLRLPGLDESVDAIA  281 (358)
T ss_pred             CCCCCEECCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCHHCCCCCCCCHHHHHHHH
T ss_conf             46751004222666033233332110002440356764252111333055431567640330011100353101122221


Q ss_pred             ECCC-------HHC-CC-CHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             1243-------102-68-88899888875213332157743676
Q gi|254780872|r  137 NMEV-------IEH-VD-NIPYFIKTCCSLLLSNGLMFISTINR  171 (254)
Q Consensus       137 ~~~v-------leH-v~-d~~~~l~~~~~~LkpgG~liist~Nr  171 (254)
T Consensus       282 ~d~p~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~  325 (358)
T TIGR01177       282 TDPPYGRSTTAAGDGLEELYEKSLEELHEVLKGGGWLAVAVPTD  325 (358)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             25654531112210368888888888888642687179974033