HHsearch alignment for GI: 254780872 and conserved domain: TIGR02081

>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=99.58  E-value=1e-14  Score=111.98  Aligned_cols=140  Identities=22%  Similarity=0.372  Sum_probs=105.2

Q ss_pred             HHCCEEEECCCHHHHHHHHHHC----C-----CCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC-C-CCCCCCHHH
Q ss_conf             0162888569856999999731----9-----816995213567788886531011211112210012-3-211153013
Q gi|254780872|r   66 KGLRILDLGCGGGLLSEPMAQM----G-----ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE-I-AETDEKFDI  134 (254)
Q Consensus        66 ~g~~VLDiGCG~G~~s~~la~~----g-----~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~-l-~~~~~~FD~  134 (254)
T Consensus        13 ~GSRVLDLGCGdG~LL~~L~d~k~v~GPPttehRL~G~Eid~~~v~Ac----~~RGv~V--Iq~Dld~GL~~F~D~~FD~   86 (205)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGPPTTEHRLYGIEIDQDGVLAC----VARGVSV--IQGDLDEGLEAFPDKSFDY   86 (205)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHH----HHCCCCE--ECCCCCCCCCCCCCCCCCE
T ss_conf             887364101688789999997437898887120001023454459999----8625201--3006003401167887662


Q ss_pred             HEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCC----CCCHHHHHHHHHHHHHCCCCCCCC----CCH-H----HCC
Q ss_conf             001243102688889988887521333215774367----660245641565543104678998----571-2----253
Q gi|254780872|r  135 ILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTIN----RNLKAMLLAIIGAEYLLQWLPKGT----HQY-D----KFI  201 (254)
Q Consensus       135 V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist~N----r~~~s~~~~i~~ae~il~~~P~gt----H~~-~----~Fi  201 (254)
T Consensus        87 ViLsQTLQa~~Np~~iL~EmLRv---g~~aIVSFPNFGyW~~R~~i~~~--------GRMPkVt~~lPY~WynTPNiHfc  155 (205)
T TIGR02081        87 VILSQTLQATRNPEEILDEMLRV---GRRAIVSFPNFGYWRVRWSILTG--------GRMPKVTDELPYEWYNTPNIHFC  155 (205)
T ss_pred             EEECHHHHHHHCHHHHHHHHHHH---CCEEEEECCCCCCHHCHHHEECC--------CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             54213566422568999887767---38515605887711010311107--------85887887878888888875323


Q ss_pred             CHHHHHHHHHHCCCEEEEEEE
Q ss_conf             889999999986983888550
Q gi|254780872|r  202 KPTEMECFLAANKVKIIDRVG  222 (254)
Q Consensus       202 ~p~el~~~l~~~g~~~~~~~g  222 (254)
T Consensus       156 T~~DF~~L~~~~~~~i~~r~~  176 (205)
T TIGR02081       156 TLADFEELCEELNLRILDRAA  176 (205)
T ss_pred             CHHHHHHHHHHCCCEEHHHHH
T ss_conf             377899999871965137788