HHsearch alignment for GI: 254780872 and conserved domain: TIGR02081
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=99.58 E-value=1e-14 Score=111.98 Aligned_cols=140 Identities=22% Similarity=0.372 Sum_probs=105.2
Q ss_pred HHCCEEEECCCHHHHHHHHHHC----C-----CCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC-C-CCCCCCHHH
Q ss_conf 0162888569856999999731----9-----816995213567788886531011211112210012-3-211153013
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM----G-----ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE-I-AETDEKFDI 134 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~----g-----~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~-l-~~~~~~FD~ 134 (254)
T Consensus 13 ~GSRVLDLGCGdG~LL~~L~d~k~v~GPPttehRL~G~Eid~~~v~Ac----~~RGv~V--Iq~Dld~GL~~F~D~~FD~ 86 (205)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGPPTTEHRLYGIEIDQDGVLAC----VARGVSV--IQGDLDEGLEAFPDKSFDY 86 (205)
T ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHH----HHCCCCE--ECCCCCCCCCCCCCCCCCE
T ss_conf 887364101688789999997437898887120001023454459999----8625201--3006003401167887662
Q ss_pred HEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCC----CCCHHHHHHHHHHHHHCCCCCCCC----CCH-H----HCC
Q ss_conf 001243102688889988887521333215774367----660245641565543104678998----571-2----253
Q gi|254780872|r 135 ILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTIN----RNLKAMLLAIIGAEYLLQWLPKGT----HQY-D----KFI 201 (254)
Q Consensus 135 V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist~N----r~~~s~~~~i~~ae~il~~~P~gt----H~~-~----~Fi 201 (254)
T Consensus 87 ViLsQTLQa~~Np~~iL~EmLRv---g~~aIVSFPNFGyW~~R~~i~~~--------GRMPkVt~~lPY~WynTPNiHfc 155 (205)
T TIGR02081 87 VILSQTLQATRNPEEILDEMLRV---GRRAIVSFPNFGYWRVRWSILTG--------GRMPKVTDELPYEWYNTPNIHFC 155 (205)
T ss_pred EEECHHHHHHHCHHHHHHHHHHH---CCEEEEECCCCCCHHCHHHEECC--------CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 54213566422568999887767---38515605887711010311107--------85887887878888888875323
Q ss_pred CHHHHHHHHHHCCCEEEEEEE
Q ss_conf 889999999986983888550
Q gi|254780872|r 202 KPTEMECFLAANKVKIIDRVG 222 (254)
Q Consensus 202 ~p~el~~~l~~~g~~~~~~~g 222 (254)
T Consensus 156 T~~DF~~L~~~~~~~i~~r~~ 176 (205)
T TIGR02081 156 TLADFEELCEELNLRILDRAA 176 (205)
T ss_pred CHHHHHHHHHHCCCEEHHHHH
T ss_conf 377899999871965137788