HHsearch alignment for GI: 254780872 and conserved domain: TIGR02085
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process.
Probab=95.42 E-value=0.0089 Score=37.86 Aligned_cols=93 Identities=23% Similarity=0.299 Sum_probs=61.1
Q ss_pred CCEEEECCCHHHHHHHHH----H-CC--CCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCC-C-CCHHHHEE
Q ss_conf 628885698569999997----3-19--8169952135677888865310112-111122100123211-1-53013001
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMA----Q-MG--ATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAET-D-EKFDIILN 137 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la----~-~g--~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~~-~-~~FD~V~~ 137 (254)
T Consensus 239 ~~mWDLFCGVGGFgLHCAkalqekw~p~~~lTGIEI~~eAIa~A~~SA~~lGl~~~~F~aLDsa~f~~~~~e~~PeLVlV 318 (386)
T TIGR02085 239 KQMWDLFCGVGGFGLHCAKALQEKWGPDTQLTGIEIESEAIACAKQSAKILGLENLSFAALDSAKFATAQAESVPELVLV 318 (386)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 10320104654127899898764158970443134377899999999987353321045445799998623688965776
Q ss_pred CCCHHCCCCHH----HHHHHHHHHCCCCCEEEEE
Q ss_conf 24310268888----9988887521333215774
Q gi|254780872|r 138 MEVIEHVDNIP----YFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 138 ~~vleHv~d~~----~~l~~~~~~LkpgG~liis 167 (254)
T Consensus 319 -------NPPRRGiG~eL~~~L~~~aP~fILYSS 345 (386)
T TIGR02085 319 -------NPPRRGIGKELCDYLSQLAPKFILYSS 345 (386)
T ss_pred -------CCCCCCCCHHHHHHHHHCCCCEEEECC
T ss_conf -------788888760689999750886266216