HHsearch alignment for GI: 254780872 and conserved domain: TIGR02085

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process.
Probab=95.42  E-value=0.0089  Score=37.86  Aligned_cols=93  Identities=23%  Similarity=0.299  Sum_probs=61.1

Q ss_pred             CCEEEECCCHHHHHHHHH----H-CC--CCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCC-C-CCHHHHEE
Q ss_conf             628885698569999997----3-19--8169952135677888865310112-111122100123211-1-53013001
Q gi|254780872|r   68 LRILDLGCGGGLLSEPMA----Q-MG--ATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAET-D-EKFDIILN  137 (254)
Q Consensus        68 ~~VLDiGCG~G~~s~~la----~-~g--~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~~-~-~~FD~V~~  137 (254)
T Consensus       239 ~~mWDLFCGVGGFgLHCAkalqekw~p~~~lTGIEI~~eAIa~A~~SA~~lGl~~~~F~aLDsa~f~~~~~e~~PeLVlV  318 (386)
T TIGR02085       239 KQMWDLFCGVGGFGLHCAKALQEKWGPDTQLTGIEIESEAIACAKQSAKILGLENLSFAALDSAKFATAQAESVPELVLV  318 (386)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             10320104654127899898764158970443134377899999999987353321045445799998623688965776


Q ss_pred             CCCHHCCCCHH----HHHHHHHHHCCCCCEEEEE
Q ss_conf             24310268888----9988887521333215774
Q gi|254780872|r  138 MEVIEHVDNIP----YFIKTCCSLLLSNGLMFIS  167 (254)
Q Consensus       138 ~~vleHv~d~~----~~l~~~~~~LkpgG~liis  167 (254)
T Consensus       319 -------NPPRRGiG~eL~~~L~~~aP~fILYSS  345 (386)
T TIGR02085       319 -------NPPRRGIGKELCDYLSQLAPKFILYSS  345 (386)
T ss_pred             -------CCCCCCCCHHHHHHHHHCCCCEEEECC
T ss_conf             -------788888760689999750886266216