HHsearch alignment for GI: 254780872 and conserved domain: TIGR02143
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869 This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing.
Probab=96.71 E-value=0.00026 Score=47.36 Aligned_cols=103 Identities=24% Similarity=0.330 Sum_probs=70.7
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCC---CCCH------HHH
Q ss_conf 016288856985699999973198169952135677888865310112-111122100123211---1530------130
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAET---DEKF------DII 135 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~~---~~~F------D~V 135 (254)
T Consensus 203 ~g~DLLELYCGNGNFsLaLA~~f~rVLATEiaK~SV~aAq~Ni~~N~idNv~i~RlSAEEft~A~~~~R~F~RL~d~gId 282 (361)
T TIGR02143 203 KGMDLLELYCGNGNFSLALAQNFERVLATEIAKPSVNAAQYNIAANKIDNVQIIRLSAEEFTEAMNGVREFRRLKDGGID 282 (361)
T ss_pred CCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 88720100026753104456533345543024024799999987179883101023279999986037765465668863
Q ss_pred EECCCHHCC-CCHH-HHH-HHHHHHCCCCC-EEEEEC
Q ss_conf 012431026-8888-998-88875213332-157743
Q gi|254780872|r 136 LNMEVIEHV-DNIP-YFI-KTCCSLLLSNG-LMFIST 168 (254)
Q Consensus 136 ~~~~vleHv-~d~~-~~l-~~~~~~LkpgG-~liist 168 (254)
T Consensus 283 L~~Y~f~tiFVDPPRaGlD~~t~~Lv~~y~rIlYISC 319 (361)
T TIGR02143 283 LKSYNFNTIFVDPPRAGLDPDTVKLVQKYERILYISC 319 (361)
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEEC
T ss_conf 3420256026779888889899999962598799846