HHsearch alignment for GI: 254780872 and conserved domain: TIGR02143

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869 This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing.
Probab=96.71  E-value=0.00026  Score=47.36  Aligned_cols=103  Identities=24%  Similarity=0.330  Sum_probs=70.7

Q ss_pred             HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCC---CCCH------HHH
Q ss_conf             016288856985699999973198169952135677888865310112-111122100123211---1530------130
Q gi|254780872|r   66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAET---DEKF------DII  135 (254)
Q Consensus        66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~~---~~~F------D~V  135 (254)
T Consensus       203 ~g~DLLELYCGNGNFsLaLA~~f~rVLATEiaK~SV~aAq~Ni~~N~idNv~i~RlSAEEft~A~~~~R~F~RL~d~gId  282 (361)
T TIGR02143       203 KGMDLLELYCGNGNFSLALAQNFERVLATEIAKPSVNAAQYNIAANKIDNVQIIRLSAEEFTEAMNGVREFRRLKDGGID  282 (361)
T ss_pred             CCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             88720100026753104456533345543024024799999987179883101023279999986037765465668863


Q ss_pred             EECCCHHCC-CCHH-HHH-HHHHHHCCCCC-EEEEEC
Q ss_conf             012431026-8888-998-88875213332-157743
Q gi|254780872|r  136 LNMEVIEHV-DNIP-YFI-KTCCSLLLSNG-LMFIST  168 (254)
Q Consensus       136 ~~~~vleHv-~d~~-~~l-~~~~~~LkpgG-~liist  168 (254)
T Consensus       283 L~~Y~f~tiFVDPPRaGlD~~t~~Lv~~y~rIlYISC  319 (361)
T TIGR02143       283 LKSYNFNTIFVDPPRAGLDPDTVKLVQKYERILYISC  319 (361)
T ss_pred             CCCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEEC
T ss_conf             3420256026779888889899999962598799846