HHsearch alignment for GI: 254780872 and conserved domain: TIGR03534
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=99.58 E-value=2.5e-14 Score=109.56 Aligned_cols=169 Identities=22% Similarity=0.359 Sum_probs=112.9
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHH-------------CHH----H--HHHHHHHHHHHCCCCCCCCCCHHHCC
Q ss_conf 7898899999999988746888871267751-------------756----5--99999998865187644458800162
Q gi|254780872|r 9 TTKNQDAINQFSNIASEWWEPTGKFKPLHQI-------------NPV----R--IKYIQDKIMQHFQCKSDDTHPFKGLR 69 (254)
Q Consensus 9 ~t~~~~ei~~F~~~a~~WwD~~g~~~~Lh~~-------------N~~----R--~~~I~~~i~~~~~~~~~~~~~l~g~~ 69 (254)
T Consensus 23 ~~l~~~~~~~~~~~~~rr~--~g--~PlqYI~g~~~F~~~~f~V~~~VLIPRpETE~Lve~~l~~~~--------~~~~~ 90 (251)
T TIGR03534 23 KELTPEELARFEALVARRA--KG--EPVAYILGEREFYGLDFKVSPGVLIPRPDTEELVEAALERLK--------KGPLK 90 (251)
T ss_pred CCCCHHHHHHHHHHHHHHH--CC--CCHHHHHCEEEEEEEEEEEECCEEEECCCHHHHHHHHHHHHC--------CCCCE
T ss_conf 8899999999999999998--69--968995087689868999718878648833999999999731--------48986
Q ss_pred EEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCHHHHEEC--------
Q ss_conf 888569856999999731--98169952135677888865310112-1111221001232111530130012--------
Q gi|254780872|r 70 ILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAETDEKFDIILNM-------- 138 (254)
Q Consensus 70 VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~~~~~FD~V~~~-------- 138 (254)
T Consensus 91 ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~~~~-~~~~~fDlIvsNPPYI~~~e 169 (251)
T TIGR03534 91 VLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAKRLGLENVRFLKSDWFEP-LPGGKFDLIVSNPPYIPEAD 169 (251)
T ss_pred EEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHC-CCCCCCCEEEECCCCCCHHH
T ss_conf 99955671699999999679978999989879999999999980998268651314321-56898668997899887456
Q ss_pred ------CCHHCCC------------CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHC
Q ss_conf ------4310268------------8889988887521333215774367660245641565543104678998571225
Q gi|254780872|r 139 ------EVIEHVD------------NIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKF 200 (254)
Q Consensus 139 ------~vleHv~------------d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~F 200 (254)
T Consensus 170 ~~~l~~eV~~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~Ei-g--------------------------~~-- 220 (251)
T TIGR03534 170 IHLLDPEVRFHEPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLLEI-G--------------------------YD-- 220 (251)
T ss_pred HHHCCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE-C--------------------------HH--
T ss_conf 663286010267299971798469999999999998536798899996-8--------------------------37--
Q ss_pred CCHHHHHHHHHHCCCEEEEE
Q ss_conf 38899999999869838885
Q gi|254780872|r 201 IKPTEMECFLAANKVKIIDR 220 (254)
Q Consensus 201 i~p~el~~~l~~~g~~~~~~ 220 (254)
T Consensus 221 -q~~~v~~l~~~~gf~~i~~ 239 (251)
T TIGR03534 221 -QGEAVRALFEAAGFADVET 239 (251)
T ss_pred -HHHHHHHHHHHCCCCEEEE
T ss_conf -8999999999689970688