HHsearch alignment for GI: 254780872 and conserved domain: TIGR03587
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.68 E-value=5.4e-08 Score=70.21 Aligned_cols=137 Identities=18% Similarity=0.273 Sum_probs=87.3
Q ss_pred CCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCC
Q ss_conf 62888569856999999731--9816995213567788886531011211112210012321115301300124310268
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVD 145 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~ 145 (254)
T Consensus 45 kSilE~GcNIGlNL~ALk~L~P~~~l~gIEIN~~A~~~lk~~--~~~--~~i~n~SIld-~~~~~~~DLv~t~GVLIHin 119 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY--LPN--INIIQGSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH--CCC--CEEEECCCCC-CCCCCCEEEEEEEEEEEEEC
T ss_conf 826896688477699998748744049995399999999865--897--2699653346-67787423899830899978
Q ss_pred --CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHC-CCEEEEEEE
Q ss_conf --88899888875213332157743676602456415655431046789985712253889999999986-983888550
Q gi|254780872|r 146 --NIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAAN-KVKIIDRVG 222 (254)
Q Consensus 146 --d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~-g~~~~~~~g 222 (254)
T Consensus 120 P~~L~~vy~~l~~~s~k-yili~EYynp~p~~i-------------~YRG-~~-~~LfKrDFa~~~~~~~~~lklvdy-g 182 (204)
T TIGR03587 120 PDNLPTAYRELYRCSNR-YILIAEYYNPSPVEI-------------SYRG-NS-GRLWKRDFAGEMMDRYPDLKLVDY-G 182 (204)
T ss_pred HHHHHHHHHHHHHHHCC-EEEEEEECCCCCEEE-------------EECC-CC-CCEECCCHHHHHHHHCCCCEEEEC-C
T ss_conf 89999999999985205-599999428996467-------------3048-76-843334307999975889579861-3
Q ss_pred EEEC
Q ss_conf 5766
Q gi|254780872|r 223 VVYN 226 (254)
Q Consensus 223 ~~~~ 226 (254)
T Consensus 183 F~y~ 186 (204)
T TIGR03587 183 FPYH 186 (204)
T ss_pred EEEE
T ss_conf 1776