Query gi|254780872|ref|YP_003065285.1| 3-demethylubiquinone-9 3-methyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 254
No_of_seqs 244 out of 7098
Neff 6.8
Searched_HMMs 39220
Date Mon May 30 00:09:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780872.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01983 UbiG ubiquinone bios 100.0 0 0 604.5 16.7 229 15-244 1-275 (275)
2 PRK05134 3-demethylubiquinone- 100.0 0 0 540.6 21.8 232 8-251 1-233 (233)
3 COG2227 UbiG 2-polyprenyl-3-me 100.0 0 0 468.1 16.7 235 8-251 9-243 (243)
4 KOG1270 consensus 100.0 0 0 433.9 9.5 244 6-253 29-279 (282)
5 PRK00216 ubiE ubiquinone/menaq 100.0 1E-30 2.7E-35 211.1 17.5 206 14-250 11-239 (239)
6 PRK11036 putative metallothion 100.0 9.7E-30 2.5E-34 205.1 15.9 197 18-224 5-209 (256)
7 pfam01209 Ubie_methyltran ubiE 100.0 1.3E-29 3.4E-34 204.3 12.7 191 14-223 7-221 (233)
8 TIGR01934 MenG_MenH_UbiE ubiqu 100.0 2.5E-29 6.4E-34 202.6 11.2 187 19-223 5-230 (242)
9 PRK10258 biotin biosynthesis p 100.0 4.7E-27 1.2E-31 188.5 16.1 180 9-217 2-182 (251)
10 COG2226 UbiE Methylase involve 100.0 2.3E-27 6E-32 190.3 13.6 155 66-220 51-222 (238)
11 PRK11873 arsM arsenite S-adeno 100.0 6.6E-28 1.7E-32 193.8 9.9 169 65-251 72-258 (258)
12 PRK07580 Mg-protoporphyrin IX 99.9 4.7E-27 1.2E-31 188.5 12.3 194 11-222 8-214 (230)
13 smart00828 PKS_MT Methyltransf 99.9 6E-27 1.5E-31 187.8 11.6 139 68-221 1-143 (224)
14 PRK08317 hypothetical protein; 99.9 1.1E-26 2.9E-31 186.1 11.8 153 66-224 19-178 (241)
15 PTZ00098 phosphoethanolamine N 99.9 4E-26 1E-30 182.7 12.3 145 66-222 52-202 (263)
16 TIGR02072 BioC biotin biosynth 99.9 4.6E-24 1.2E-28 169.9 10.4 152 64-221 34-197 (272)
17 pfam02353 CMAS Cyclopropane-fa 99.9 2.5E-24 6.3E-29 171.6 8.8 157 66-233 62-230 (273)
18 PRK01683 trans-aconitate 2-met 99.9 5.4E-23 1.4E-27 163.3 14.7 143 66-218 31-177 (252)
19 TIGR02021 BchM-ChlM magnesium 99.9 1.2E-23 3.1E-28 167.3 10.8 197 14-224 3-213 (224)
20 PRK05785 hypothetical protein; 99.9 3.2E-23 8.3E-28 164.7 11.8 181 11-218 5-207 (225)
21 pfam08003 Methyltransf_9 Prote 99.9 2.2E-22 5.7E-27 159.4 11.0 149 62-223 111-268 (315)
22 COG2230 Cfa Cyclopropane fatty 99.9 1.9E-22 4.9E-27 159.8 8.2 157 66-233 72-236 (283)
23 KOG1540 consensus 99.9 1.9E-20 4.9E-25 147.4 13.2 200 8-224 50-284 (296)
24 pfam08241 Methyltransf_11 Meth 99.8 1.5E-21 3.9E-26 154.3 6.3 94 71-166 1-95 (95)
25 PRK11705 cyclopropane fatty ac 99.8 3.2E-21 8.1E-26 152.3 7.8 154 66-233 167-325 (383)
26 pfam07021 MetW Methionine bios 99.8 4.3E-20 1.1E-24 145.3 10.8 147 66-224 13-169 (193)
27 cd02440 AdoMet_MTases S-adenos 99.8 5.5E-20 1.4E-24 144.6 7.8 101 69-169 1-105 (107)
28 pfam08242 Methyltransf_12 Meth 99.8 2.7E-20 6.8E-25 146.6 5.7 94 71-164 1-98 (98)
29 TIGR00452 TIGR00452 methyltran 99.8 5.2E-19 1.3E-23 138.6 9.9 156 59-224 114-277 (316)
30 PRK06202 hypothetical protein; 99.7 8.3E-18 2.1E-22 131.1 9.9 145 67-218 62-219 (233)
31 PRK11207 tellurite resistance 99.7 1.7E-17 4.4E-22 129.2 10.7 135 66-220 30-168 (198)
32 COG2264 PrmA Ribosomal protein 99.7 1.9E-16 4.8E-21 122.7 12.3 128 66-233 162-293 (300)
33 COG4976 Predicted methyltransf 99.7 1.2E-16 3.1E-21 123.9 7.6 138 68-224 127-267 (287)
34 PRK00517 prmA ribosomal protei 99.7 9.8E-16 2.5E-20 118.3 12.1 121 65-221 161-285 (298)
35 pfam06325 PrmA Ribosomal prote 99.7 1.5E-15 3.9E-20 117.1 11.1 121 65-221 159-281 (294)
36 PRK11088 rrmA 23S rRNA methylt 99.6 1.3E-14 3.4E-19 111.2 13.4 136 9-174 47-187 (272)
37 pfam03848 TehB Tellurite resis 99.6 9E-16 2.3E-20 118.5 7.2 145 65-233 29-175 (192)
38 KOG4300 consensus 99.6 1.1E-15 2.8E-20 117.9 6.7 159 68-235 78-242 (252)
39 TIGR00406 prmA ribosomal prote 99.6 1.5E-15 3.8E-20 117.1 7.0 124 65-221 193-324 (330)
40 pfam05175 MTS Methyltransferas 99.6 6.1E-15 1.6E-19 113.3 8.6 103 66-171 31-142 (170)
41 pfam03291 Pox_MCEL mRNA cappin 99.6 1.7E-14 4.3E-19 110.6 10.7 209 9-223 8-267 (327)
42 TIGR02081 metW methionine bios 99.6 1E-14 2.6E-19 112.0 9.1 140 66-222 13-176 (205)
43 TIGR03534 RF_mod_HemK protein- 99.6 2.5E-14 6.3E-19 109.6 11.0 169 9-220 23-239 (251)
44 TIGR02752 MenG_heptapren 2-hep 99.6 1.1E-14 2.7E-19 111.8 9.0 153 65-222 44-218 (231)
45 PRK00377 cbiT cobalt-precorrin 99.6 1.2E-13 3.1E-18 105.3 13.3 153 63-250 37-198 (198)
46 pfam05401 NodS Nodulation prot 99.5 4.6E-15 1.2E-19 114.1 4.0 120 68-190 45-168 (201)
47 KOG2361 consensus 99.5 3.9E-14 1E-18 108.3 7.9 200 6-221 18-236 (264)
48 KOG1271 consensus 99.5 5.5E-14 1.4E-18 107.4 8.3 141 44-221 52-204 (227)
49 PRK09328 N5-glutamine S-adenos 99.5 1.7E-13 4.4E-18 104.3 9.9 170 9-221 45-261 (277)
50 PRK01544 bifunctional N5-gluta 99.5 2.3E-13 5.9E-18 103.6 9.0 101 65-167 134-265 (503)
51 COG4106 Tam Trans-aconitate me 99.5 9.3E-14 2.4E-18 106.0 6.9 155 68-230 32-194 (257)
52 PRK08287 cobalt-precorrin-6Y C 99.5 3E-12 7.7E-17 96.6 14.2 153 63-251 27-185 (186)
53 PRK09329 N5-glutamine S-adenos 99.5 1.6E-12 4.1E-17 98.3 12.8 168 8-217 42-256 (285)
54 PRK12335 tellurite resistance 99.4 3.1E-13 8E-18 102.7 6.5 136 65-220 121-259 (289)
55 pfam05219 DREV DREV methyltran 99.4 2E-12 5.1E-17 97.7 10.3 149 66-225 94-243 (265)
56 TIGR03533 L3_gln_methyl protei 99.4 6.2E-13 1.6E-17 100.9 7.1 101 67-168 122-251 (284)
57 KOG3010 consensus 99.4 1.9E-13 4.9E-18 104.0 4.5 96 69-165 36-133 (261)
58 KOG2899 consensus 99.4 3.7E-12 9.4E-17 96.1 10.7 151 65-223 57-256 (288)
59 COG2242 CobL Precorrin-6B meth 99.4 1.6E-11 4.2E-16 92.1 13.6 154 62-250 30-187 (187)
60 TIGR00537 hemK_rel_arch methyl 99.4 2.2E-12 5.7E-17 97.4 9.1 122 65-218 19-165 (183)
61 pfam01135 PCMT Protein-L-isoas 99.4 3E-12 7.5E-17 96.7 9.3 96 66-167 73-172 (205)
62 PRK11805 N5-glutamine S-adenos 99.4 1.4E-12 3.7E-17 98.6 7.3 103 67-170 134-265 (307)
63 COG4123 Predicted O-methyltran 99.4 5.8E-12 1.5E-16 94.9 10.3 129 66-224 44-196 (248)
64 KOG2940 consensus 99.4 1.3E-12 3.4E-17 98.8 7.0 148 68-220 74-225 (325)
65 KOG1541 consensus 99.4 4.9E-13 1.3E-17 101.5 4.4 99 66-168 50-160 (270)
66 PRK07402 precorrin-6B methylas 99.4 2E-11 5.1E-16 91.5 12.5 150 65-249 39-195 (196)
67 PRK13942 protein-L-isoaspartat 99.4 2.5E-12 6.3E-17 97.2 7.5 96 66-167 76-175 (214)
68 KOG1975 consensus 99.3 3.7E-12 9.5E-17 96.0 7.8 174 36-223 99-318 (389)
69 PRK00312 pcm protein-L-isoaspa 99.3 2.7E-12 6.9E-17 96.9 6.7 97 66-168 78-175 (213)
70 TIGR00477 tehB tellurite resis 99.3 2.1E-12 5.4E-17 97.6 5.6 101 66-167 73-177 (239)
71 COG2890 HemK Methylase of poly 99.3 1.6E-11 4.1E-16 92.1 10.1 121 69-220 113-261 (280)
72 PRK09489 rsmC 16S ribosomal RN 99.3 1.6E-11 4.1E-16 92.1 8.4 102 67-171 197-305 (342)
73 pfam05891 Hydroxy-O-Methy Puta 99.3 8.7E-11 2.2E-15 87.6 12.1 139 67-221 56-199 (217)
74 COG2519 GCD14 tRNA(1-methylade 99.3 1.2E-10 3E-15 86.8 12.2 100 65-170 93-197 (256)
75 PRK06922 hypothetical protein; 99.2 1.4E-11 3.5E-16 92.5 6.4 106 62-167 416-538 (679)
76 COG2518 Pcm Protein-L-isoaspar 99.2 3.2E-11 8.2E-16 90.2 7.3 97 65-167 71-168 (209)
77 PRK13944 protein-L-isoaspartat 99.2 3.4E-11 8.6E-16 90.1 7.4 97 66-168 72-173 (205)
78 COG2813 RsmC 16S RNA G1207 met 99.2 1.4E-10 3.4E-15 86.4 8.6 101 67-170 159-267 (300)
79 KOG1499 consensus 99.2 4.9E-11 1.2E-15 89.1 5.8 103 64-167 58-166 (346)
80 COG1092 Predicted SAM-dependen 99.1 7.4E-11 1.9E-15 88.0 5.9 135 65-223 216-367 (393)
81 COG0220 Predicted S-adenosylme 99.1 4.4E-10 1.1E-14 83.2 9.7 104 68-176 50-172 (227)
82 PRK13943 protein-L-isoaspartat 99.1 1.6E-10 4E-15 86.0 6.8 96 66-167 75-174 (317)
83 pfam10294 Methyltransf_16 Puta 99.1 2.8E-10 7.1E-15 84.4 8.1 108 64-172 42-158 (171)
84 PRK00121 trmB tRNA (guanine-N( 99.1 4.9E-10 1.3E-14 82.9 7.8 100 68-172 56-174 (229)
85 smart00138 MeTrc Methyltransfe 99.1 8.8E-10 2.3E-14 81.3 8.5 101 67-167 100-241 (264)
86 pfam07942 N2227 N2227-like pro 99.1 2.3E-08 5.9E-13 72.5 15.6 179 18-221 18-238 (268)
87 pfam05148 Methyltransf_8 Hypot 99.1 2.6E-09 6.5E-14 78.5 10.7 111 67-220 68-178 (214)
88 COG2263 Predicted RNA methylas 99.0 2.7E-10 7E-15 84.5 5.2 124 63-224 42-170 (198)
89 KOG1269 consensus 99.0 2.7E-10 7E-15 84.5 4.9 106 66-171 110-218 (364)
90 pfam01234 NNMT_PNMT_TEMT NNMT/ 99.0 1.4E-08 3.6E-13 73.9 13.6 180 44-249 39-261 (261)
91 pfam02390 Methyltransf_4 Putat 99.0 1.1E-09 2.8E-14 80.8 7.6 106 69-179 23-148 (199)
92 TIGR00479 rumA 23S rRNA (uraci 99.0 6.6E-09 1.7E-13 75.9 11.2 116 37-168 272-398 (434)
93 PRK13168 rumA 23S rRNA 5-methy 99.0 1.2E-08 3.1E-13 74.3 12.0 123 66-227 294-426 (440)
94 pfam01170 UPF0020 Putative RNA 99.0 7.1E-10 1.8E-14 81.9 5.7 104 66-170 28-143 (171)
95 PRK03522 rumB 23S rRNA methylu 99.0 1.6E-08 4.2E-13 73.5 12.6 121 66-227 233-361 (375)
96 PRK00107 gidB glucose-inhibite 99.0 2.7E-08 6.9E-13 72.1 13.7 173 10-222 16-196 (216)
97 TIGR02469 CbiT precorrin-6Y C5 99.0 2.3E-09 5.8E-14 78.8 7.7 102 65-169 18-134 (135)
98 COG2521 Predicted archaeal met 99.0 2.9E-09 7.3E-14 78.1 8.1 140 60-221 128-276 (287)
99 pfam08704 GCD14 tRNA methyltra 99.0 7.9E-09 2E-13 75.4 10.3 101 65-170 101-210 (309)
100 COG1352 CheR Methylase of chem 99.0 3.7E-09 9.4E-14 77.5 8.3 124 41-168 75-241 (268)
101 pfam09445 Methyltransf_15 RNA 99.0 7.4E-10 1.9E-14 81.8 4.5 71 68-138 2-78 (165)
102 pfam01596 Methyltransf_3 O-met 99.0 1.9E-09 4.9E-14 79.2 6.6 99 66-167 44-153 (204)
103 KOG3045 consensus 98.9 1E-08 2.5E-13 74.8 10.2 110 66-220 180-289 (325)
104 TIGR00740 TIGR00740 methyltran 98.9 2.7E-09 7E-14 78.3 6.8 117 45-168 45-169 (247)
105 pfam01739 CheR CheR methyltran 98.9 7.6E-09 1.9E-13 75.5 8.8 100 67-167 31-172 (194)
106 pfam05724 TPMT Thiopurine S-me 98.9 5E-09 1.3E-13 76.6 7.6 137 66-221 22-174 (203)
107 pfam02475 Met_10 Met-10+ like- 98.9 6.9E-09 1.8E-13 75.8 8.2 95 66-165 100-198 (199)
108 PRK10901 16S rRNA methyltransf 98.9 7.6E-09 1.9E-13 75.5 8.4 107 62-168 241-373 (428)
109 pfam10672 Methyltrans_SAM S-ad 98.9 6.8E-09 1.7E-13 75.8 6.6 103 66-168 123-238 (286)
110 KOG3420 consensus 98.8 1.7E-09 4.3E-14 79.6 2.8 78 62-139 44-122 (185)
111 KOG2904 consensus 98.8 1.3E-08 3.2E-13 74.1 7.2 117 65-181 147-298 (328)
112 TIGR00091 TIGR00091 tRNA (guan 98.8 9.1E-09 2.3E-13 75.0 6.3 103 69-173 22-152 (216)
113 PRK11783 rlmL 23S rRNA m(2)G24 98.8 1.7E-08 4.4E-13 73.3 7.0 103 66-168 552-670 (716)
114 KOG1500 consensus 98.8 1.3E-08 3.4E-13 74.0 6.4 103 62-167 173-281 (517)
115 PRK10611 chemotaxis methyltran 98.8 1.8E-08 4.6E-13 73.2 6.8 101 67-167 116-261 (287)
116 pfam02527 GidB rRNA small subu 98.8 7E-08 1.8E-12 69.6 9.7 126 66-223 48-176 (184)
117 pfam06080 DUF938 Protein of un 98.8 8.3E-08 2.1E-12 69.1 10.1 161 45-222 12-189 (201)
118 COG1041 Predicted DNA modifica 98.7 2.7E-08 6.9E-13 72.1 6.5 104 66-169 197-311 (347)
119 COG0500 SmtA SAM-dependent met 98.7 5.2E-08 1.3E-12 70.3 7.6 102 70-172 52-159 (257)
120 pfam03141 DUF248 Putative meth 98.7 4.6E-09 1.2E-13 76.9 2.1 98 68-169 119-220 (506)
121 COG4122 Predicted O-methyltran 98.7 4.1E-08 1.1E-12 71.0 6.7 99 66-167 59-165 (219)
122 PRK04457 spermidine synthase; 98.7 1.1E-07 2.9E-12 68.2 8.3 121 43-171 50-180 (262)
123 TIGR03587 Pse_Me-ase pseudamin 98.7 5.4E-08 1.4E-12 70.2 6.5 137 68-226 45-186 (204)
124 KOG3987 consensus 98.7 2E-08 5.1E-13 72.9 4.1 166 66-252 112-287 (288)
125 COG0357 GidB Predicted S-adeno 98.7 5.5E-08 1.4E-12 70.2 6.3 175 9-223 14-196 (215)
126 COG2265 TrmA SAM-dependent met 98.7 1E-07 2.6E-12 68.5 7.6 115 38-168 272-396 (432)
127 PRK05031 tRNA (uracil-5-)-meth 98.6 7.8E-08 2E-12 69.2 6.4 59 67-125 208-267 (363)
128 pfam12147 Hydrolase_5 Putative 98.6 3.4E-07 8.8E-12 65.3 9.4 144 68-221 137-297 (311)
129 KOG1661 consensus 98.6 1.6E-07 4E-12 67.4 7.3 97 66-168 82-193 (237)
130 PRK03612 spermidine synthase; 98.6 7.2E-07 1.8E-11 63.3 9.8 96 67-167 294-410 (516)
131 KOG3191 consensus 98.6 7.8E-07 2E-11 63.1 9.9 121 68-220 45-191 (209)
132 TIGR00080 pimt protein-L-isoas 98.6 8.9E-08 2.3E-12 68.9 5.0 95 66-166 82-185 (228)
133 pfam03602 Cons_hypoth95 Conser 98.5 4.7E-07 1.2E-11 64.4 7.8 119 47-170 28-153 (181)
134 COG3897 Predicted methyltransf 98.5 1.7E-07 4.3E-12 67.2 5.4 110 62-174 75-185 (218)
135 KOG1331 consensus 98.5 9.3E-08 2.4E-12 68.8 3.7 95 67-168 46-143 (293)
136 pfam00891 Methyltransf_2 O-met 98.5 4.2E-07 1.1E-11 64.7 6.9 92 68-168 103-198 (239)
137 pfam09243 Rsm22 Mitochondrial 98.5 1.7E-06 4.2E-11 61.0 9.8 103 65-170 33-142 (275)
138 PRK00811 spermidine synthase; 98.5 5.8E-07 1.5E-11 63.8 7.0 98 66-168 78-193 (283)
139 pfam05958 tRNA_U5-meth_tr tRNA 98.4 4.5E-07 1.2E-11 64.5 6.0 58 68-125 199-257 (353)
140 PRK01544 bifunctional N5-gluta 98.4 1.8E-06 4.5E-11 60.9 8.4 99 65-168 343-459 (503)
141 COG0421 SpeE Spermidine syntha 98.4 9.3E-07 2.4E-11 62.6 7.0 98 68-167 78-189 (282)
142 PRK01581 speE spermidine synth 98.4 2.2E-06 5.6E-11 60.2 8.8 137 67-235 140-298 (363)
143 TIGR00138 gidB methyltransfera 98.4 1.6E-06 4.2E-11 61.1 7.4 124 39-166 15-151 (197)
144 PRK10909 rsmD 16S rRNA m(2)G96 98.4 1.7E-06 4.5E-11 60.9 7.3 120 45-171 37-161 (198)
145 COG1189 Predicted rRNA methyla 98.4 1.2E-05 3.2E-10 55.6 11.6 175 43-251 62-244 (245)
146 PRK13255 thiopurine S-methyltr 98.3 2.4E-06 6.1E-11 60.0 7.6 136 66-220 37-188 (218)
147 pfam01189 Nol1_Nop2_Fmu NOL1/N 98.3 1.8E-06 4.7E-11 60.7 6.4 107 62-168 80-214 (277)
148 TIGR00755 ksgA dimethyladenosi 98.3 1.1E-06 2.9E-11 62.1 5.1 92 48-147 18-117 (277)
149 pfam01564 Spermine_synth Sperm 98.3 3.2E-06 8.2E-11 59.2 7.3 103 66-168 75-189 (240)
150 PRK11188 rrmJ 23S rRNA methylt 98.3 4.6E-06 1.2E-10 58.2 8.1 111 41-168 32-165 (209)
151 KOG3178 consensus 98.3 5.8E-06 1.5E-10 57.6 8.4 140 68-222 179-330 (342)
152 PRK11933 yebU rRNA (cytosine-C 98.3 2.6E-06 6.6E-11 59.8 6.5 106 63-168 110-242 (471)
153 TIGR03438 probable methyltrans 98.3 2.6E-05 6.5E-10 53.6 11.3 174 40-220 41-288 (301)
154 PRK11727 putative SAM-dependen 98.2 1.5E-06 3.7E-11 61.3 4.6 113 26-142 79-203 (326)
155 COG2520 Predicted methyltransf 98.2 3.2E-06 8.3E-11 59.2 6.3 137 66-229 188-330 (341)
156 pfam01728 FtsJ FtsJ-like methy 98.2 4.1E-06 1E-10 58.6 6.8 94 66-169 21-134 (176)
157 smart00650 rADc Ribosomal RNA 98.2 3.2E-06 8.1E-11 59.3 5.7 70 66-136 13-82 (169)
158 pfam11968 DUF3321 Protein of u 98.2 1.6E-05 4.1E-10 54.9 9.0 116 68-221 54-181 (220)
159 PRK00536 speE spermidine synth 98.2 1.1E-05 2.9E-10 55.8 7.9 114 43-168 53-171 (262)
160 COG0030 KsgA Dimethyladenosine 98.2 3.6E-06 9.2E-11 58.9 5.3 70 67-137 31-101 (259)
161 COG0144 Sun tRNA and rRNA cyto 98.2 6.9E-06 1.8E-10 57.2 6.6 107 62-168 152-288 (355)
162 KOG2352 consensus 98.1 5.1E-06 1.3E-10 58.0 5.9 102 68-169 50-162 (482)
163 COG3963 Phospholipid N-methylt 98.1 4.7E-06 1.2E-10 58.2 5.7 102 63-168 45-156 (194)
164 TIGR00438 rrmJ ribosomal RNA l 98.1 6.1E-06 1.6E-10 57.5 6.2 113 41-167 13-149 (192)
165 COG4627 Uncharacterized protei 98.1 3E-06 7.7E-11 59.4 4.5 122 70-217 6-133 (185)
166 pfam05971 Methyltransf_10 Prot 98.1 5.6E-06 1.4E-10 57.7 5.7 111 26-142 30-151 (254)
167 KOG2798 consensus 98.1 9E-05 2.3E-09 50.3 11.8 160 47-224 134-339 (369)
168 KOG2187 consensus 98.1 2.9E-06 7.3E-11 59.5 4.1 97 67-167 384-489 (534)
169 PRK04266 fibrillarin; Provisio 98.0 0.00022 5.5E-09 47.9 12.4 157 58-250 64-226 (226)
170 TIGR03439 methyl_EasF probable 98.0 0.00015 3.7E-09 49.0 11.5 176 39-220 53-307 (319)
171 pfam04672 DUF574 Protein of un 98.0 6.8E-05 1.7E-09 51.0 9.7 170 69-250 72-268 (268)
172 COG0116 Predicted N6-adenine-s 98.0 2.1E-05 5.3E-10 54.2 6.9 102 67-168 192-344 (381)
173 PTZ00338 dimethyladenosine tra 98.0 2.3E-05 5.9E-10 53.9 7.0 70 66-137 38-109 (296)
174 pfam04816 DUF633 Family of unk 98.0 5.4E-05 1.4E-09 51.6 8.9 119 70-221 1-123 (204)
175 COG0742 N6-adenine-specific me 98.0 4.8E-05 1.2E-09 52.0 8.2 118 47-169 29-155 (187)
176 COG4262 Predicted spermidine s 97.9 8E-05 2E-09 50.6 8.7 135 68-234 291-446 (508)
177 KOG1663 consensus 97.9 2.7E-05 6.9E-10 53.5 6.3 98 66-167 73-182 (237)
178 pfam02384 N6_Mtase N-6 DNA Met 97.9 4E-05 1E-09 52.5 7.0 107 64-170 44-186 (312)
179 pfam01269 Fibrillarin Fibrilla 97.9 0.00011 2.9E-09 49.6 9.4 131 64-222 71-212 (229)
180 pfam00398 RrnaAD Ribosomal RNA 97.9 5.1E-05 1.3E-09 51.8 7.1 74 47-128 18-91 (258)
181 TIGR00417 speE spermidine synt 97.9 2.3E-05 5.9E-10 53.9 5.2 146 42-221 55-224 (284)
182 KOG2793 consensus 97.9 5.9E-05 1.5E-09 51.4 7.2 108 66-174 86-205 (248)
183 COG2384 Predicted SAM-dependen 97.8 0.00044 1.1E-08 46.0 11.0 122 67-221 17-142 (226)
184 PTZ00146 fibrillarin; Provisio 97.8 0.00049 1.3E-08 45.7 11.2 135 66-230 135-280 (296)
185 PRK00274 ksgA dimethyladenosin 97.8 4.7E-05 1.2E-09 52.0 5.8 56 66-126 39-94 (267)
186 PRK09880 L-idonate 5-dehydroge 97.8 0.00013 3.2E-09 49.4 7.5 96 64-167 167-265 (343)
187 COG1064 AdhP Zn-dependent alco 97.7 0.00014 3.5E-09 49.1 7.2 91 66-167 166-258 (339)
188 pfam03059 NAS Nicotianamine sy 97.7 0.00085 2.2E-08 44.2 11.0 145 68-252 123-275 (277)
189 TIGR00563 rsmB ribosomal RNA s 97.6 0.0002 5.2E-09 48.0 6.8 106 63-168 268-408 (487)
190 pfam08123 DOT1 Histone methyla 97.6 0.00025 6.4E-09 47.5 7.0 137 10-168 6-157 (205)
191 COG4076 Predicted RNA methylas 97.6 0.00021 5.3E-09 48.0 6.0 110 42-165 19-132 (252)
192 KOG1709 consensus 97.6 0.0002 5.1E-09 48.1 5.8 105 65-171 100-207 (271)
193 KOG2730 consensus 97.5 7E-05 1.8E-09 50.9 3.3 97 68-165 96-199 (263)
194 TIGR00446 nop2p NOL1/NOP2/sun 97.5 0.00038 9.7E-09 46.4 7.0 122 46-168 57-213 (284)
195 pfam03721 UDPG_MGDP_dh_N UDP-g 97.5 0.00076 1.9E-08 44.5 8.0 133 68-229 1-153 (185)
196 PRK13256 thiopurine S-methyltr 97.5 0.00067 1.7E-08 44.8 7.7 134 66-219 43-194 (226)
197 KOG0820 consensus 97.5 0.00042 1.1E-08 46.1 6.6 69 67-137 59-129 (315)
198 pfam03269 DUF268 Caenorhabditi 97.4 0.00027 6.9E-09 47.3 4.9 97 66-169 1-112 (177)
199 TIGR03366 HpnZ_proposed putati 97.3 0.0009 2.3E-08 44.1 7.0 98 63-167 117-217 (280)
200 TIGR03451 mycoS_dep_FDH mycoth 97.3 0.00098 2.5E-08 43.8 6.7 95 65-167 175-275 (358)
201 COG1889 NOP1 Fibrillarin-like 97.3 0.004 1E-07 40.0 9.8 142 66-249 76-229 (231)
202 KOG2920 consensus 97.2 0.00021 5.3E-09 48.0 2.8 103 65-167 115-233 (282)
203 KOG2915 consensus 97.2 0.0013 3.4E-08 43.0 6.8 97 66-167 105-208 (314)
204 TIGR03201 dearomat_had 6-hydro 97.2 0.0015 3.8E-08 42.7 6.7 99 65-167 165-271 (349)
205 PRK04338 N(2),N(2)-dimethylgua 97.2 0.0015 3.8E-08 42.7 6.5 99 66-168 51-153 (376)
206 PRK10309 galactitol-1-phosphat 97.1 0.0024 6E-08 41.5 7.2 99 62-167 156-259 (347)
207 KOG1122 consensus 97.1 0.0011 2.9E-08 43.5 5.5 108 61-168 236-371 (460)
208 TIGR02716 C20_methyl_CrtF C-20 97.1 0.0096 2.5E-07 37.7 10.1 165 35-220 128-304 (306)
209 COG3129 Predicted SAM-dependen 97.1 0.00038 9.7E-09 46.4 2.8 127 11-142 21-164 (292)
210 COG0677 WecC UDP-N-acetyl-D-ma 97.1 0.0041 1E-07 40.0 8.0 96 68-167 10-127 (436)
211 KOG3201 consensus 97.1 0.00031 7.8E-09 46.9 2.2 106 65-171 28-143 (201)
212 PRK09422 alcohol dehydrogenase 97.0 0.003 7.7E-08 40.8 7.1 93 66-167 162-260 (338)
213 PRK05396 tdh L-threonine 3-deh 97.0 0.0025 6.4E-08 41.3 6.4 96 64-167 161-262 (341)
214 PRK10083 putative dehydrogenas 97.0 0.0037 9.5E-08 40.2 7.2 97 63-167 157-258 (339)
215 pfam01861 DUF43 Protein of unk 97.0 0.0024 6E-08 41.4 6.1 102 63-166 41-147 (243)
216 TIGR03026 NDP-sugDHase nucleot 97.0 0.014 3.5E-07 36.7 10.0 101 68-168 1-121 (411)
217 pfam07091 FmrO Ribosomal RNA m 97.0 0.0017 4.3E-08 42.3 5.2 154 41-221 83-240 (248)
218 COG1063 Tdh Threonine dehydrog 96.9 0.0038 9.6E-08 40.2 6.7 94 68-169 170-271 (350)
219 COG0293 FtsJ 23S rRNA methylas 96.9 0.0043 1.1E-07 39.9 6.9 111 42-168 27-159 (205)
220 KOG1501 consensus 96.9 0.0031 8E-08 40.7 6.0 99 68-166 68-173 (636)
221 PRK07417 arogenate dehydrogena 96.9 0.0048 1.2E-07 39.5 6.9 85 68-164 2-88 (280)
222 PRK07201 short chain dehydroge 96.8 0.0028 7.1E-08 41.0 5.4 80 59-138 368-460 (663)
223 TIGR00692 tdh L-threonine 3-de 96.7 0.0058 1.5E-07 39.0 6.6 140 63-220 158-311 (341)
224 PRK13771 putative alcohol dehy 96.7 0.0063 1.6E-07 38.8 6.6 92 64-167 160-254 (332)
225 TIGR02143 trmA_only tRNA (urac 96.7 0.00026 6.7E-09 47.4 -0.5 103 66-168 203-319 (361)
226 PRK11064 wecC UDP-N-acetyl-D-m 96.6 0.022 5.7E-07 35.4 9.0 100 68-168 4-120 (415)
227 PRK11760 putative RNA 2'-O-rib 96.6 0.0083 2.1E-07 38.1 6.4 111 41-161 184-295 (356)
228 PRK07502 cyclohexadienyl dehyd 96.5 0.0072 1.8E-07 38.4 5.9 85 68-163 7-95 (307)
229 pfam02005 TRM N2,N2-dimethylgu 96.5 0.013 3.4E-07 36.8 6.8 99 66-168 49-153 (375)
230 COG4798 Predicted methyltransf 96.4 0.027 6.8E-07 34.9 8.0 143 66-228 48-211 (238)
231 PRK08268 3-hydroxybutyryl-CoA 96.4 0.052 1.3E-06 33.1 9.4 97 68-166 4-116 (503)
232 PRK06035 3-hydroxyacyl-CoA deh 96.3 0.081 2.1E-06 31.9 10.0 100 68-168 4-121 (291)
233 KOG0024 consensus 96.2 0.029 7.5E-07 34.7 7.6 98 66-170 169-275 (354)
234 COG1867 TRM1 N2,N2-dimethylgua 96.2 0.014 3.5E-07 36.7 5.8 97 67-167 53-153 (380)
235 PRK07660 consensus 96.2 0.085 2.2E-06 31.8 9.8 152 68-226 4-190 (283)
236 COG5459 Predicted rRNA methyla 96.2 0.0086 2.2E-07 38.0 4.6 109 60-169 107-226 (484)
237 COG1568 Predicted methyltransf 96.1 0.016 4.2E-07 36.2 5.8 106 63-170 149-262 (354)
238 pfam06962 rRNA_methylase Putat 96.1 0.012 3.1E-07 37.1 5.0 78 90-167 1-91 (140)
239 PRK06129 3-hydroxyacyl-CoA deh 96.0 0.091 2.3E-06 31.6 9.3 152 68-226 3-191 (308)
240 TIGR00478 tly hemolysin A; Int 96.0 0.0096 2.5E-07 37.7 4.2 159 43-231 60-235 (240)
241 pfam06859 Bin3 Bicoid-interact 96.0 0.017 4.4E-07 36.1 5.5 84 131-223 1-93 (110)
242 PRK09117 consensus 96.0 0.12 3E-06 31.0 9.7 146 68-221 3-181 (282)
243 PRK06522 2-dehydropantoate 2-r 95.9 0.067 1.7E-06 32.4 8.1 92 68-166 1-100 (307)
244 smart00829 PKS_ER Enoylreducta 95.9 0.026 6.7E-07 35.0 6.0 93 66-165 104-202 (288)
245 TIGR00095 TIGR00095 putative m 95.8 0.017 4.4E-07 36.1 4.9 104 65-169 54-178 (210)
246 pfam02737 3HCDH_N 3-hydroxyacy 95.8 0.17 4.4E-06 29.9 10.0 99 69-168 1-114 (180)
247 PRK09260 3-hydroxybutyryl-CoA 95.8 0.033 8.3E-07 34.4 6.2 100 68-168 3-118 (289)
248 PRK13341 recombination factor 95.8 0.18 4.5E-06 29.8 14.0 162 43-220 476-658 (726)
249 PRK09424 pntA NAD(P) transhydr 95.8 0.018 4.5E-07 36.0 4.8 100 65-165 163-282 (510)
250 PRK05866 short chain dehydroge 95.8 0.019 4.8E-07 35.9 4.9 78 61-138 34-124 (290)
251 PHA02056 putative methyltransf 95.8 0.035 9E-07 34.2 6.2 146 68-234 66-226 (279)
252 pfam05185 PRMT5 PRMT5 arginine 95.7 0.11 2.7E-06 31.2 8.6 96 68-165 188-294 (447)
253 PRK07666 fabG 3-ketoacyl-(acyl 95.7 0.02 5.1E-07 35.7 4.7 76 63-138 2-90 (238)
254 PRK07109 short chain dehydroge 95.7 0.021 5.4E-07 35.5 4.7 76 62-137 3-91 (338)
255 PRK06130 3-hydroxybutyryl-CoA 95.6 0.2 5.2E-06 29.4 10.7 152 68-227 6-188 (310)
256 PRK05808 3-hydroxybutyryl-CoA 95.6 0.21 5.4E-06 29.4 10.3 99 68-168 4-118 (282)
257 PRK12826 3-ketoacyl-(acyl-carr 95.5 0.026 6.5E-07 35.0 4.8 62 63-124 2-66 (253)
258 PRK05653 fabG 3-ketoacyl-(acyl 95.5 0.025 6.5E-07 35.1 4.7 75 64-138 2-89 (246)
259 PRK11154 fadJ multifunctional 95.5 0.13 3.2E-06 30.7 8.3 121 42-166 286-423 (706)
260 PRK06139 short chain dehydroge 95.5 0.027 7E-07 34.8 4.8 76 63-138 2-90 (324)
261 KOG3115 consensus 95.5 0.039 9.8E-07 33.9 5.6 100 67-168 61-183 (249)
262 PRK08277 D-mannonate oxidoredu 95.5 0.024 6.1E-07 35.2 4.5 76 63-138 6-94 (278)
263 PRK04148 hypothetical protein; 95.5 0.061 1.6E-06 32.7 6.6 90 66-166 16-107 (135)
264 pfam03141 DUF248 Putative meth 95.5 0.11 2.7E-06 31.2 7.8 95 68-167 367-466 (506)
265 PRK08213 gluconate 5-dehydroge 95.5 0.025 6.2E-07 35.1 4.5 61 64-124 9-72 (259)
266 PRK08507 prephenate dehydrogen 95.5 0.075 1.9E-06 32.1 6.9 83 68-164 1-87 (275)
267 TIGR02085 meth_trns_rumB 23S r 95.4 0.0089 2.3E-07 37.9 2.1 93 68-167 239-345 (386)
268 PRK08217 fabG 3-ketoacyl-(acyl 95.4 0.028 7.2E-07 34.8 4.6 74 65-138 3-89 (253)
269 PRK05708 2-dehydropantoate 2-r 95.4 0.15 3.7E-06 30.4 8.2 96 67-170 2-105 (305)
270 PRK08862 short chain dehydroge 95.4 0.03 7.6E-07 34.6 4.6 53 64-116 2-57 (227)
271 PRK07530 3-hydroxybutyryl-CoA 95.3 0.055 1.4E-06 33.0 5.9 96 68-166 5-117 (292)
272 PRK06194 hypothetical protein; 95.3 0.034 8.8E-07 34.2 4.8 62 63-124 2-66 (301)
273 pfam01262 AlaDh_PNT_C Alanine 95.3 0.04 1E-06 33.8 5.1 100 66-167 19-120 (150)
274 PRK08293 3-hydroxybutyryl-CoA 95.3 0.036 9.1E-07 34.1 4.8 100 68-168 4-120 (288)
275 PRK11730 fadB multifunctional 95.3 0.26 6.7E-06 28.7 9.3 99 66-166 312-426 (715)
276 PRK00050 mraW S-adenosyl-methy 95.2 0.038 9.7E-07 34.0 4.9 72 65-136 22-99 (309)
277 pfam00107 ADH_zinc_N Zinc-bind 95.2 0.072 1.8E-06 32.2 6.2 84 76-167 1-89 (131)
278 PRK04308 murD UDP-N-acetylmura 95.2 0.17 4.4E-06 29.9 8.0 73 65-141 3-77 (445)
279 TIGR01082 murC UDP-N-acetylmur 95.1 0.28 7.1E-06 28.6 9.0 140 77-236 10-156 (491)
280 PRK06124 gluconate 5-dehydroge 95.1 0.04 1E-06 33.8 4.7 63 63-125 10-75 (259)
281 PRK07066 3-hydroxybutyryl-CoA 95.1 0.26 6.6E-06 28.8 8.8 101 68-168 8-119 (321)
282 KOG1269 consensus 95.1 0.0089 2.3E-07 37.9 1.2 138 62-201 176-329 (364)
283 PRK07677 short chain dehydroge 95.1 0.04 1E-06 33.8 4.6 74 65-138 1-87 (254)
284 PRK12429 3-hydroxybutyrate deh 95.0 0.045 1.1E-06 33.5 4.6 60 65-124 2-64 (258)
285 pfam07757 AdoMet_MTase Predict 95.0 0.016 4E-07 36.4 2.2 32 68-99 60-91 (112)
286 TIGR00536 hemK_fam methyltrans 94.9 0.02 5.1E-07 35.7 2.7 70 68-137 128-205 (311)
287 PRK05876 short chain dehydroge 94.9 0.047 1.2E-06 33.4 4.6 61 63-123 2-65 (275)
288 PRK06949 short chain dehydroge 94.9 0.052 1.3E-06 33.1 4.7 76 63-138 5-93 (258)
289 PRK05786 fabG 3-ketoacyl-(acyl 94.8 0.051 1.3E-06 33.2 4.6 101 65-166 3-133 (238)
290 PRK07479 consensus 94.8 0.053 1.3E-06 33.1 4.6 60 65-124 3-65 (252)
291 TIGR01444 fkbM_fam methyltrans 94.8 0.056 1.4E-06 32.9 4.7 46 69-114 1-50 (142)
292 PRK08324 short chain dehydroge 94.8 0.044 1.1E-06 33.6 4.2 46 61-106 415-463 (676)
293 PRK07576 short chain dehydroge 94.8 0.057 1.5E-06 32.9 4.7 76 63-138 4-92 (260)
294 PRK08085 gluconate 5-dehydroge 94.7 0.062 1.6E-06 32.6 4.7 61 63-123 5-68 (254)
295 PRK06227 consensus 94.7 0.053 1.4E-06 33.0 4.3 74 65-138 3-89 (256)
296 PRK06198 short chain dehydroge 94.7 0.055 1.4E-06 33.0 4.4 62 64-125 3-68 (268)
297 PRK12939 short chain dehydroge 94.6 0.066 1.7E-06 32.5 4.8 62 63-124 3-67 (250)
298 TIGR03206 benzo_BadH 2-hydroxy 94.6 0.062 1.6E-06 32.7 4.6 74 65-138 1-87 (250)
299 PRK05867 short chain dehydroge 94.6 0.057 1.5E-06 32.9 4.4 62 63-124 5-69 (253)
300 PRK07097 gluconate 5-dehydroge 94.6 0.07 1.8E-06 32.3 4.9 63 62-124 5-70 (265)
301 TIGR01177 TIGR01177 conserved 94.6 0.038 9.7E-07 34.0 3.5 107 65-171 202-325 (358)
302 PRK08226 short chain dehydroge 94.6 0.055 1.4E-06 33.0 4.2 74 64-138 3-89 (263)
303 COG0686 Ald Alanine dehydrogen 94.6 0.065 1.7E-06 32.5 4.6 97 66-165 167-265 (371)
304 PRK08589 short chain dehydroge 94.5 0.057 1.4E-06 32.9 4.2 59 64-123 3-64 (272)
305 PRK12921 2-dehydropantoate 2-r 94.5 0.25 6.5E-06 28.8 7.6 91 68-166 1-100 (306)
306 PRK06172 short chain dehydroge 94.5 0.062 1.6E-06 32.6 4.3 61 64-124 4-67 (253)
307 PRK06720 hypothetical protein; 94.5 0.061 1.6E-06 32.7 4.3 60 64-123 13-75 (169)
308 PRK07478 short chain dehydroge 94.5 0.064 1.6E-06 32.5 4.4 75 64-138 3-90 (254)
309 PRK07814 short chain dehydroge 94.5 0.065 1.7E-06 32.5 4.4 75 64-138 7-94 (263)
310 pfam02558 ApbA Ketopantoate re 94.5 0.2 5.1E-06 29.5 6.9 89 70-166 1-98 (150)
311 KOG2198 consensus 94.5 0.17 4.3E-06 30.0 6.5 103 66-168 155-296 (375)
312 COG0286 HsdM Type I restrictio 94.4 0.21 5.4E-06 29.3 6.9 101 67-167 187-325 (489)
313 PRK10754 quinone oxidoreductas 94.4 0.17 4.3E-06 30.0 6.4 92 66-166 140-237 (327)
314 PRK12825 fabG 3-ketoacyl-(acyl 94.4 0.081 2.1E-06 31.9 4.8 76 63-138 3-92 (250)
315 PRK09186 flagellin modificatio 94.4 0.078 2E-06 32.0 4.7 59 65-123 2-64 (255)
316 PRK02472 murD UDP-N-acetylmura 94.4 0.066 1.7E-06 32.5 4.2 76 63-141 5-82 (450)
317 PRK08229 2-dehydropantoate 2-r 94.3 0.38 9.7E-06 27.8 8.0 94 68-170 3-108 (341)
318 PRK07890 short chain dehydroge 94.2 0.082 2.1E-06 31.9 4.4 74 65-138 3-89 (258)
319 PRK02006 murD UDP-N-acetylmura 94.2 0.14 3.7E-06 30.4 5.6 34 65-98 5-40 (501)
320 PRK10742 putative methyltransf 94.1 0.06 1.5E-06 32.7 3.6 133 9-144 9-177 (250)
321 PRK06181 short chain dehydroge 94.1 0.081 2.1E-06 31.9 4.3 72 67-138 1-85 (263)
322 PRK12829 short chain dehydroge 94.1 0.084 2.1E-06 31.8 4.3 46 61-106 5-53 (264)
323 PRK09242 tropinone reductase; 94.1 0.091 2.3E-06 31.6 4.5 75 64-138 7-96 (258)
324 PRK11783 rlmL 23S rRNA m(2)G24 94.0 0.27 6.8E-06 28.7 6.8 82 90-171 262-354 (716)
325 PRK07531 bifunctional 3-hydrox 94.0 0.55 1.4E-05 26.8 9.8 147 68-221 3-178 (489)
326 PRK11524 putative methyltransf 94.0 0.11 2.7E-06 31.2 4.6 22 145-166 192-213 (284)
327 PRK07819 3-hydroxybutyryl-CoA 93.9 0.21 5.3E-06 29.4 6.0 98 68-167 3-116 (284)
328 PRK06113 7-alpha-hydroxysteroi 93.8 0.11 2.7E-06 31.2 4.4 60 63-122 7-69 (255)
329 PTZ00142 6-phosphogluconate de 93.8 0.22 5.7E-06 29.2 6.0 27 69-95 257-286 (474)
330 PRK12428 3-alpha-hydroxysteroi 93.8 0.13 3.2E-06 30.7 4.7 40 64-103 2-44 (261)
331 PRK05690 molybdopterin biosynt 93.7 0.14 3.5E-06 30.5 4.8 73 65-137 30-128 (245)
332 PRK12810 gltD glutamate syntha 93.7 0.47 1.2E-05 27.2 7.5 37 62-98 138-176 (472)
333 KOG4058 consensus 93.6 0.052 1.3E-06 33.1 2.5 80 68-149 74-156 (199)
334 KOG1253 consensus 93.6 0.05 1.3E-06 33.2 2.4 101 64-168 107-216 (525)
335 PRK07035 short chain dehydroge 93.6 0.14 3.7E-06 30.4 4.7 60 63-122 4-66 (252)
336 PRK05855 short chain dehydroge 93.6 0.13 3.4E-06 30.6 4.5 54 62-115 310-366 (582)
337 PRK06249 2-dehydropantoate 2-r 93.5 0.51 1.3E-05 27.0 7.5 92 66-166 4-104 (313)
338 PRK07774 short chain dehydroge 93.5 0.15 3.7E-06 30.3 4.7 60 64-123 3-65 (250)
339 PRK05872 short chain dehydroge 93.5 0.13 3.4E-06 30.6 4.4 45 62-106 4-51 (296)
340 PRK07063 short chain dehydroge 93.4 0.13 3.3E-06 30.7 4.3 75 64-138 4-92 (259)
341 pfam01795 Methyltransf_5 MraW 93.4 0.17 4.3E-06 29.9 4.8 72 65-136 19-98 (310)
342 pfam04989 CmcI Cephalosporin h 93.3 0.18 4.5E-06 29.8 4.9 133 67-219 33-183 (202)
343 PRK09291 short chain dehydroge 93.3 0.19 4.7E-06 29.7 4.9 72 67-138 2-80 (257)
344 PRK01390 murD UDP-N-acetylmura 93.3 0.44 1.1E-05 27.4 6.8 43 62-104 4-48 (457)
345 PRK08339 short chain dehydroge 93.3 0.16 4E-06 30.1 4.5 61 64-124 5-69 (263)
346 PRK07060 short chain dehydroge 93.3 0.14 3.7E-06 30.4 4.3 74 64-137 6-83 (245)
347 PRK13699 putative methylase; P 93.2 0.17 4.3E-06 30.0 4.6 13 146-158 148-160 (227)
348 PRK05565 fabG 3-ketoacyl-(acyl 93.2 0.17 4.3E-06 29.9 4.6 61 64-124 2-66 (247)
349 cd00315 Cyt_C5_DNA_methylase C 93.1 0.25 6.3E-06 28.9 5.3 65 68-137 1-68 (275)
350 PRK12823 benD 1,6-dihydroxycyc 93.1 0.18 4.6E-06 29.8 4.6 75 63-138 4-91 (260)
351 COG0270 Dcm Site-specific DNA 93.1 0.28 7.1E-06 28.6 5.6 41 67-107 3-44 (328)
352 KOG4169 consensus 93.0 0.095 2.4E-06 31.5 3.1 71 65-135 3-77 (261)
353 PRK05650 short chain dehydroge 93.0 0.19 4.8E-06 29.7 4.6 55 69-123 2-59 (270)
354 pfam11312 DUF3115 Protein of u 93.0 0.82 2.1E-05 25.7 10.1 101 67-167 80-215 (288)
355 PRK12481 2-deoxy-D-gluconate 3 93.0 0.15 3.8E-06 30.3 4.0 60 63-124 4-66 (251)
356 COG0275 Predicted S-adenosylme 93.0 0.16 4.1E-06 30.1 4.2 70 67-136 24-101 (314)
357 COG4301 Uncharacterized conser 92.9 0.83 2.1E-05 25.7 9.5 124 39-168 56-193 (321)
358 PRK06114 short chain dehydroge 92.9 0.21 5.4E-06 29.3 4.8 65 60-124 9-77 (262)
359 PRK08306 dipicolinate synthase 92.9 0.36 9.3E-06 27.9 5.9 87 64-165 149-238 (296)
360 PRK03369 murD UDP-N-acetylmura 92.8 0.2 5.1E-06 29.5 4.5 68 65-140 10-79 (487)
361 PRK06841 short chain dehydroge 92.8 0.17 4.4E-06 29.9 4.2 73 63-138 11-96 (255)
362 PRK13394 3-hydroxybutyrate deh 92.8 0.21 5.3E-06 29.4 4.6 61 64-124 4-67 (262)
363 PRK08993 2-deoxy-D-gluconate 3 92.7 0.17 4.4E-06 29.9 4.0 40 63-102 6-48 (253)
364 PRK06200 2,3-dihydroxy-2,3-dih 92.6 0.18 4.5E-06 29.8 4.1 42 64-105 3-47 (263)
365 PRK01710 murD UDP-N-acetylmura 92.6 0.28 7.1E-06 28.6 5.0 72 65-141 12-87 (458)
366 KOG2651 consensus 92.5 0.13 3.4E-06 30.6 3.3 38 68-105 155-193 (476)
367 PRK06935 2-deoxy-D-gluconate 3 92.5 0.18 4.6E-06 29.8 3.9 61 63-124 11-74 (258)
368 PRK06346 consensus 92.5 0.22 5.6E-06 29.3 4.3 74 65-138 3-89 (251)
369 PRK12809 putative oxidoreducta 92.5 0.95 2.4E-05 25.3 7.6 54 45-98 288-343 (639)
370 PRK06138 short chain dehydroge 92.4 0.22 5.6E-06 29.3 4.3 59 65-124 3-64 (252)
371 pfam01555 N6_N4_Mtase DNA meth 92.4 0.21 5.4E-06 29.3 4.2 27 202-231 166-192 (221)
372 PRK01438 murD UDP-N-acetylmura 92.4 0.15 3.9E-06 30.2 3.5 73 64-140 11-87 (481)
373 PRK09072 short chain dehydroge 92.4 0.25 6.3E-06 28.9 4.5 73 64-138 2-86 (262)
374 PRK07062 short chain dehydroge 92.3 0.26 6.6E-06 28.8 4.5 46 64-109 5-53 (265)
375 PRK08628 short chain dehydroge 92.3 0.21 5.2E-06 29.4 4.0 59 64-123 4-65 (258)
376 PRK07231 fabG 3-ketoacyl-(acyl 92.2 0.25 6.5E-06 28.9 4.4 58 64-123 3-63 (250)
377 PRK12769 putative oxidoreducta 92.2 0.99 2.5E-05 25.2 7.4 54 45-98 305-360 (654)
378 PRK12814 putative NADPH-depend 92.2 0.85 2.2E-05 25.6 7.1 39 61-99 187-227 (652)
379 KOG1099 consensus 92.2 0.24 6.2E-06 28.9 4.3 129 7-167 2-162 (294)
380 PRK06500 short chain dehydroge 92.0 0.25 6.3E-06 28.9 4.2 99 65-166 4-134 (249)
381 PRK12778 putative bifunctional 91.9 1.1 2.8E-05 24.9 7.6 53 46-98 418-472 (760)
382 KOG2352 consensus 91.9 0.16 4E-06 30.1 3.1 105 66-172 295-422 (482)
383 PRK06019 phosphoribosylaminoim 91.9 0.34 8.6E-06 28.1 4.7 142 66-226 6-153 (377)
384 PRK06545 prephenate dehydrogen 91.7 0.68 1.7E-05 26.2 6.2 86 68-166 1-90 (357)
385 PRK05557 fabG 3-ketoacyl-(acyl 91.6 0.35 8.9E-06 28.0 4.6 60 64-123 2-65 (248)
386 PRK11749 putative oxidoreducta 91.6 1.2 3.1E-05 24.6 7.4 39 60-98 133-173 (460)
387 COG1250 FadB 3-hydroxyacyl-CoA 91.5 0.45 1.2E-05 27.3 5.1 98 68-166 4-116 (307)
388 PRK08945 short chain dehydroge 91.5 0.59 1.5E-05 26.6 5.7 48 63-110 9-59 (245)
389 PRK12827 short chain dehydroge 91.4 0.37 9.5E-06 27.8 4.6 62 63-124 2-70 (251)
390 pfam04445 DUF548 Protein of un 91.4 0.57 1.4E-05 26.7 5.4 76 68-143 77-163 (235)
391 PRK08265 short chain dehydroge 91.3 0.32 8.3E-06 28.2 4.2 57 64-123 3-62 (261)
392 PRK06701 short chain dehydroge 91.3 0.32 8.2E-06 28.2 4.1 106 61-166 39-178 (289)
393 PRK05875 short chain dehydroge 91.2 0.37 9.5E-06 27.8 4.4 60 64-123 4-69 (277)
394 KOG1562 consensus 91.2 0.35 8.9E-06 28.0 4.2 102 66-167 121-235 (337)
395 TIGR03325 BphB_TodD cis-2,3-di 91.2 0.32 8.2E-06 28.2 4.0 41 65-105 3-46 (262)
396 pfam02826 2-Hacid_dh_C D-isome 91.2 0.72 1.8E-05 26.0 5.8 90 62-166 31-123 (176)
397 PRK06914 short chain dehydroge 91.2 0.59 1.5E-05 26.6 5.3 46 65-110 1-49 (280)
398 PRK07067 sorbitol dehydrogenas 91.1 0.31 7.9E-06 28.3 3.9 41 65-105 3-46 (256)
399 PRK07326 short chain dehydroge 91.1 0.36 9.3E-06 27.9 4.2 43 65-107 3-48 (235)
400 PRK06505 enoyl-(acyl carrier p 91.1 0.42 1.1E-05 27.5 4.6 49 65-113 5-58 (271)
401 COG0604 Qor NADPH:quinone redu 91.1 1.1 2.7E-05 25.0 6.6 91 67-166 143-239 (326)
402 pfam00145 DNA_methylase C-5 cy 91.1 0.54 1.4E-05 26.8 5.1 64 68-137 1-66 (319)
403 KOG1198 consensus 91.0 0.63 1.6E-05 26.4 5.4 96 65-168 156-256 (347)
404 pfam02636 DUF185 Uncharacteriz 90.9 0.65 1.7E-05 26.3 5.4 43 67-109 18-70 (240)
405 PRK08703 short chain dehydroge 90.9 0.63 1.6E-05 26.4 5.3 44 63-106 2-48 (239)
406 PRK00421 murC UDP-N-acetylmura 90.9 1.4 3.6E-05 24.2 10.0 70 64-141 5-77 (459)
407 COG1565 Uncharacterized conser 90.7 0.59 1.5E-05 26.6 5.0 44 67-110 78-131 (370)
408 COG0287 TyrA Prephenate dehydr 90.6 0.99 2.5E-05 25.2 6.1 87 68-165 4-95 (279)
409 TIGR03253 oxalate_frc formyl-C 90.4 0.4 1E-05 27.6 3.9 13 204-216 321-333 (415)
410 PRK06125 short chain dehydroge 90.4 0.53 1.4E-05 26.9 4.6 74 64-137 4-87 (259)
411 COG1748 LYS9 Saccharopine dehy 90.4 1.1 2.8E-05 24.9 6.2 68 68-138 2-75 (389)
412 PRK07454 short chain dehydroge 90.4 0.5 1.3E-05 27.0 4.4 72 67-138 6-90 (241)
413 PRK07832 short chain dehydroge 90.4 0.55 1.4E-05 26.8 4.6 71 68-138 1-85 (272)
414 PRK08340 glucose-1-dehydrogena 90.3 0.5 1.3E-05 27.0 4.4 56 68-124 1-59 (259)
415 PRK13984 putative oxidoreducta 90.3 1.6 4.1E-05 23.9 7.2 100 63-162 279-412 (604)
416 pfam07109 Mg-por_mtran_C Magne 90.1 1.6 4E-05 23.9 6.8 80 137-223 1-83 (97)
417 KOG1201 consensus 90.1 1.2 3E-05 24.7 6.1 56 48-105 21-79 (300)
418 PRK12744 short chain dehydroge 90.1 0.67 1.7E-05 26.2 4.9 104 63-166 4-143 (257)
419 PRK06057 short chain dehydroge 90.1 0.36 9.1E-06 27.9 3.4 42 64-105 4-48 (255)
420 TIGR01832 kduD 2-deoxy-D-gluco 89.9 0.32 8.3E-06 28.2 3.1 114 64-182 2-151 (249)
421 PRK07533 enoyl-(acyl carrier p 89.9 0.59 1.5E-05 26.6 4.4 44 63-106 2-50 (254)
422 PRK06101 short chain dehydroge 89.9 1.7 4.4E-05 23.7 10.3 38 68-105 2-42 (241)
423 PRK05479 ketol-acid reductoiso 89.8 1.2 3E-05 24.7 6.0 94 58-167 8-107 (336)
424 PRK12490 6-phosphogluconate de 89.6 1.4 3.7E-05 24.2 6.2 88 69-165 2-91 (298)
425 PRK06567 putative bifunctional 89.5 0.47 1.2E-05 27.2 3.7 35 62-96 396-432 (1048)
426 COG1893 ApbA Ketopantoate redu 89.5 1.9 4.7E-05 23.5 8.2 91 68-166 1-99 (307)
427 PRK08251 short chain dehydroge 89.5 0.71 1.8E-05 26.1 4.6 72 67-138 2-88 (248)
428 PRK08063 enoyl-(acyl carrier p 89.4 0.75 1.9E-05 25.9 4.7 60 65-124 2-65 (250)
429 PRK07776 consensus 89.4 0.62 1.6E-05 26.5 4.2 44 64-107 5-51 (252)
430 PRK08220 2,3-dihydroxybenzoate 89.3 0.5 1.3E-05 27.0 3.7 40 63-102 4-46 (253)
431 PRK07831 short chain dehydroge 89.3 0.66 1.7E-05 26.3 4.3 42 64-105 13-58 (261)
432 PRK08643 acetoin reductase; Va 89.2 0.73 1.9E-05 26.0 4.5 102 67-168 2-139 (256)
433 pfam01210 NAD_Gly3P_dh_N NAD-d 89.2 2 5E-05 23.3 6.8 94 68-166 1-102 (159)
434 PRK07792 fabG 3-ketoacyl-(acyl 89.1 0.7 1.8E-05 26.1 4.3 60 62-122 4-68 (303)
435 PRK08261 fabG 3-ketoacyl-(acyl 89.1 1.1 2.8E-05 24.9 5.3 41 59-99 199-242 (447)
436 PRK07523 gluconate 5-dehydroge 89.1 0.67 1.7E-05 26.2 4.2 44 63-106 5-51 (251)
437 PRK05717 oxidoreductase; Valid 89.0 0.72 1.8E-05 26.0 4.4 43 62-104 5-50 (255)
438 PRK12746 short chain dehydroge 89.0 0.81 2.1E-05 25.7 4.6 106 63-168 2-147 (254)
439 PRK08416 7-alpha-hydroxysteroi 88.9 0.92 2.3E-05 25.4 4.8 61 63-123 4-69 (260)
440 PRK06171 sorbitol-6-phosphate 88.8 0.54 1.4E-05 26.8 3.6 38 63-100 5-45 (266)
441 TIGR01963 PHB_DH 3-hydroxybuty 88.7 0.82 2.1E-05 25.7 4.5 90 68-163 2-131 (258)
442 PRK07775 short chain dehydroge 88.6 1.1 2.9E-05 24.8 5.2 59 65-123 8-69 (275)
443 PRK12828 short chain dehydroge 88.4 0.82 2.1E-05 25.7 4.3 43 63-105 3-48 (239)
444 PRK07825 short chain dehydroge 88.4 0.81 2.1E-05 25.7 4.3 42 64-105 2-46 (273)
445 PRK12742 oxidoreductase; Provi 88.1 2.3 5.9E-05 22.9 6.7 102 63-166 2-129 (237)
446 PRK07041 short chain dehydroge 88.1 0.98 2.5E-05 25.2 4.5 74 64-138 4-86 (240)
447 PRK12936 3-ketoacyl-(acyl-carr 88.1 0.85 2.2E-05 25.6 4.2 58 64-124 3-63 (245)
448 cd01075 NAD_bind_Leu_Phe_Val_D 88.1 1.4 3.5E-05 24.3 5.3 45 62-106 23-69 (200)
449 PRK11430 hypothetical protein; 88.0 0.89 2.3E-05 25.5 4.3 35 62-96 7-43 (381)
450 PRK08936 glucose-1-dehydrogena 88.0 1.1 2.8E-05 24.9 4.7 61 64-124 4-68 (261)
451 PRK06077 fabG 3-ketoacyl-(acyl 87.7 0.94 2.4E-05 25.3 4.3 102 65-166 1-135 (249)
452 PRK03525 crotonobetainyl-CoA:c 87.6 0.93 2.4E-05 25.3 4.2 13 204-216 306-318 (405)
453 TIGR02407 ectoine_ectB diamino 87.4 0.36 9.2E-06 27.9 2.0 58 47-111 56-126 (413)
454 KOG4589 consensus 87.4 0.93 2.4E-05 25.3 4.1 33 66-98 69-104 (232)
455 COG0059 IlvC Ketol-acid reduct 87.3 2 5.2E-05 23.2 5.8 91 61-167 12-108 (338)
456 KOG2539 consensus 87.3 1.7 4.4E-05 23.7 5.4 99 68-167 202-314 (491)
457 PRK06550 fabG 3-ketoacyl-(acyl 87.3 0.57 1.5E-05 26.6 2.9 36 64-99 2-40 (237)
458 COG3510 CmcI Cephalosporin hyd 87.1 0.96 2.5E-05 25.3 4.0 97 68-168 71-180 (237)
459 PRK08594 enoyl-(acyl carrier p 87.1 1.2 3.1E-05 24.6 4.5 41 64-104 3-48 (256)
460 PRK09134 short chain dehydroge 87.1 1.3 3.3E-05 24.5 4.6 61 63-123 5-69 (256)
461 PRK12935 acetoacetyl-CoA reduc 87.0 1 2.6E-05 25.1 4.1 61 64-124 3-67 (247)
462 PRK07102 short chain dehydroge 87.0 1.3 3.4E-05 24.4 4.7 71 68-138 2-83 (243)
463 PRK09496 trkA potassium transp 87.0 1.4 3.7E-05 24.2 4.8 67 67-138 232-304 (455)
464 TIGR01692 HIBADH 3-hydroxyisob 86.9 1.7 4.4E-05 23.7 5.2 88 73-170 2-93 (290)
465 PRK06947 glucose-1-dehydrogena 86.9 1.3 3.4E-05 24.4 4.7 60 65-124 4-67 (252)
466 PRK00141 murD UDP-N-acetylmura 86.9 1.2 3E-05 24.8 4.3 36 65-101 16-53 (476)
467 PRK06997 enoyl-(acyl carrier p 86.9 1.3 3.3E-05 24.4 4.6 49 64-112 3-56 (260)
468 PRK00045 hemA glutamyl-tRNA re 86.7 2.8 7.1E-05 22.4 6.8 96 63-167 178-278 (429)
469 PRK05225 ketol-acid reductoiso 86.7 1.6 4E-05 24.0 4.9 92 62-167 32-131 (489)
470 cd01491 Ube1_repeat1 Ubiquitin 86.6 2.2 5.6E-05 23.0 5.6 106 65-178 17-146 (286)
471 KOG0023 consensus 86.3 1.7 4.4E-05 23.7 5.0 98 66-171 181-283 (360)
472 COG0771 MurD UDP-N-acetylmuram 86.3 1 2.6E-05 25.1 3.8 70 65-138 5-76 (448)
473 PRK07424 bifunctional sterol d 86.3 0.8 2E-05 25.8 3.2 78 61-138 174-254 (410)
474 pfam05430 DUF752 Protein of un 86.2 1.7 4.3E-05 23.7 4.9 73 118-224 36-113 (124)
475 PRK07806 short chain dehydroge 86.2 1.5 3.8E-05 24.1 4.6 103 64-166 3-132 (248)
476 TIGR01081 mpl UDP-N-acetylmura 86.1 1.7 4.3E-05 23.7 4.8 125 69-221 3-136 (459)
477 pfam03446 NAD_binding_2 NAD bi 86.0 2.3 5.8E-05 23.0 5.5 86 69-169 3-97 (163)
478 PRK07791 short chain dehydroge 86.0 1.4 3.6E-05 24.3 4.3 33 64-96 3-38 (285)
479 PRK06079 enoyl-(acyl carrier p 85.9 1.4 3.4E-05 24.3 4.3 42 64-105 4-50 (252)
480 KOG1596 consensus 85.8 2.6 6.6E-05 22.6 5.7 94 66-168 156-261 (317)
481 PRK12771 putative glutamate sy 85.8 3.1 7.9E-05 22.1 7.8 39 60-98 130-170 (560)
482 cd00757 ThiF_MoeB_HesA_family 85.8 1.6 4E-05 23.9 4.5 73 65-137 19-117 (228)
483 TIGR02817 adh_fam_1 zinc-bindi 85.7 3.1 8E-05 22.1 6.3 100 58-169 142-251 (338)
484 PRK07984 enoyl-(acyl carrier p 85.4 1.4 3.5E-05 24.3 4.1 43 64-106 3-50 (262)
485 PRK07985 oxidoreductase; Provi 85.4 1.5 3.7E-05 24.1 4.2 104 63-166 45-183 (294)
486 KOG2078 consensus 85.3 0.36 9.1E-06 27.9 1.1 47 67-113 250-296 (495)
487 PRK06128 oxidoreductase; Provi 85.3 1.3 3.3E-05 24.5 3.9 106 61-166 49-189 (300)
488 PRK12831 putative oxidoreducta 85.2 3.3 8.4E-05 21.9 6.0 41 58-98 131-173 (464)
489 PRK08642 fabG 3-ketoacyl-(acyl 85.2 1.4 3.5E-05 24.3 4.0 35 64-98 3-40 (254)
490 PRK08415 enoyl-(acyl carrier p 85.0 1.9 4.7E-05 23.5 4.6 42 65-106 3-49 (274)
491 PRK06940 short chain dehydroge 85.0 3.3 8.4E-05 21.9 5.9 98 68-166 5-126 (277)
492 PRK12745 3-ketoacyl-(acyl-carr 84.9 1.7 4.3E-05 23.8 4.4 59 66-124 4-66 (259)
493 PRK08278 short chain dehydroge 84.8 1.6 4.1E-05 23.9 4.2 36 64-99 3-41 (273)
494 KOG2013 consensus 84.7 1.8 4.5E-05 23.6 4.4 72 66-137 11-109 (603)
495 pfam10354 DUF2431 Domain of un 84.6 3.5 8.9E-05 21.8 8.3 121 73-223 3-153 (166)
496 PRK06182 short chain dehydroge 84.5 1.1 2.9E-05 24.8 3.3 40 65-104 1-43 (273)
497 PRK03803 murD UDP-N-acetylmura 84.4 1.9 4.9E-05 23.4 4.5 28 69-96 9-38 (448)
498 PRK13243 glyoxylate reductase; 84.1 3.7 9.5E-05 21.6 6.5 91 62-166 145-238 (333)
499 PRK06484 short chain dehydroge 83.9 1.6 4.2E-05 23.8 3.9 41 65-105 272-315 (530)
500 pfam11599 AviRa RRNA methyltra 83.8 2.3 5.9E-05 22.9 4.7 61 41-108 32-97 (249)
No 1
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase; InterPro: IPR010233 This entry represents an O-methyltransferase, which is believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and mitochondria (COQ3) , . A separate methylase (MenG/UbiE) catalyses the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.; GO: 0008425 2-polyprenyl-6-methoxy-14-benzoquinone methyltransferase activity, 0006744 ubiquinone biosynthetic process.
Probab=100.00 E-value=0 Score=604.53 Aligned_cols=229 Identities=53% Similarity=1.012 Sum_probs=222.5
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCCCC------------------CCHH----------
Q ss_conf 999999998874688887126775175659999999886518764445------------------8800----------
Q gi|254780872|r 15 AINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDT------------------HPFK---------- 66 (254)
Q Consensus 15 ei~~F~~~a~~WwD~~g~~~~Lh~~N~~R~~~I~~~i~~~~~~~~~~~------------------~~l~---------- 66 (254)
||+||+++|++|||+.|+|||||+|||+|++||.+++.+.+..+.... .+++
T Consensus 1 E~~KF~~lA~~WWD~~G~fkpLH~~Np~Rl~YI~~~~~~~~~~~~~~~~E~y~P~F~~~lLP~~~~~~l~E~QE~~~~~~ 80 (275)
T TIGR01983 1 EIAKFSALAAEWWDPNGKFKPLHKMNPVRLDYIRDTIRKNFKRNPSPDDEVYVPGFSKDLLPEYVAKPLKEDQESIRDEL 80 (275)
T ss_pred CHHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCHHCCCHHHCCCCHHHHHHHHHHH
T ss_conf 91268887663147675824101115465789999998623778888881560898711172543367010255677634
Q ss_pred ----HCCEEEECCCHHHHHHHHHHCCCC-EEEECCHHHHHHHHHHHHHCCCCC------CCCCCCCCCCCCCC---CCCH
Q ss_conf ----162888569856999999731981-699521356778888653101121------11122100123211---1530
Q gi|254780872|r 67 ----GLRILDLGCGGGLLSEPMAQMGAT-VTGIDPSTKNIAIAKNHANMKNIN------IDYRVSCAEEIAET---DEKF 132 (254)
Q Consensus 67 ----g~~VLDiGCG~G~~s~~la~~g~~-V~giD~S~~~i~~Ak~~a~~~~~~------i~~~~~~~~~l~~~---~~~F 132 (254)
|++|||||||+|+|||+|||+|++ |+|||+|+++|++||.||.+++++ |+|++.++|++... .++|
T Consensus 81 ~~~~G~~vLDVGCGGGlLsE~lAR~Ga~~V~GID~~~~~i~~Ak~Ha~~~~~~~~~~K~i~Y~~~~~E~l~~~~h~~~~F 160 (275)
T TIGR01983 81 LKDSGLRVLDVGCGGGLLSEPLARLGANKVTGIDASEENIEVAKLHAKKDPLQEALDKKIEYRCTSVEELAEEQHTKKSF 160 (275)
T ss_pred HCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 11789779984278578889997558842577521177999999888733402331111454443078873055784157
Q ss_pred HHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHH-
Q ss_conf 1300124310268888998888752133321577436766024564156554310467899857122538899999999-
Q gi|254780872|r 133 DIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLA- 211 (254)
Q Consensus 133 D~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~- 211 (254)
|+|+||||||||+||..++++|..+|||||.+||||+|||++||+++|++|||||||||||||||+|||+|+||.++|+
T Consensus 161 D~V~~mEvlEHV~dp~~f~~~c~~llkPgG~lF~STINRt~kS~~~aIvgAEYiLr~vPKGTH~~~KFi~P~EL~~~l~d 240 (275)
T TIGR01983 161 DVVTCMEVLEHVPDPQAFIKACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRWVPKGTHDWEKFIKPSELTSWLED 240 (275)
T ss_pred CEEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 33764320000278889999999850899848973000218999999999999851689872471015387999999851
Q ss_pred ---HCCCEEEEEEEEEECCCCCEEEECCCCCCEEEE
Q ss_conf ---869838885505766777757864788645179
Q gi|254780872|r 212 ---ANKVKIIDRVGVVYNVFCNKWQLSAKNMDVNYM 244 (254)
Q Consensus 212 ---~~g~~~~~~~g~~~~p~~~~w~~~~~~~~vnY~ 244 (254)
++||++.+++||+|||+.++|.|| ++++|||+
T Consensus 241 ~N~~~~l~~~~~~G~~YnP~~~~w~ls-~~~dvNY~ 275 (275)
T TIGR01983 241 DNRSAGLRVKDVKGLVYNPIKNEWKLS-KDTDVNYM 275 (275)
T ss_pred CCCCCCEEEEEECCEEEEECCCEEEEC-CCCCCCCC
T ss_conf 264676489975050763013867764-86023679
No 2
>PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional
Probab=100.00 E-value=0 Score=540.62 Aligned_cols=232 Identities=49% Similarity=0.917 Sum_probs=223.8
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHC
Q ss_conf 67898899999999988746888871267751756599999998865187644458800162888569856999999731
Q gi|254780872|r 8 YTTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQM 87 (254)
Q Consensus 8 ~~t~~~~ei~~F~~~a~~WwD~~g~~~~Lh~~N~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~ 87 (254)
.||+|++|+++|+++|++|||++|+|++||.|||+|++||.+.+. |++|++|||||||+|.++++||++
T Consensus 1 ~stvd~~Ei~~F~~la~~WWd~~g~~~~Lh~~N~~R~~~i~~~~~-----------~l~G~~ILDVGCGgG~lse~LAr~ 69 (233)
T PRK05134 1 MSNVDPAEIAKFSALAARWWDPNGEFKPLHRINPLRLNYIREHAG-----------GLFGKRVLDVGCGGGILSESMARL 69 (233)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC-----------CCCCCEEEEECCCCCHHHHHHHHC
T ss_conf 997999999999988998479999960788836999999997514-----------668998999755897112899967
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 981699521356778888653101121111221001232-1115301300124310268888998888752133321577
Q gi|254780872|r 88 GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA-ETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 88 g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~-~~~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~lii 166 (254)
|++|+|||+|+++|++||.|++..+++++|++++++++. ..+++||+|+|++|||||+||..++++++++|||||.+|+
T Consensus 70 Ga~VtGID~S~~~I~~Ar~ha~~~~l~i~y~~~~~e~l~~~~~~~FDvV~~~EVlEHV~d~~~~l~~~~rlLKPGG~l~l 149 (233)
T PRK05134 70 GATVTGIDASEENIEVARLHALESGLKIDYRQITAEELAAEHPGQFDVVTCMEMLEHVPDPASFIRACAKLVKPGGLVFF 149 (233)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 99799987998999999998564434511675147665430578634774421477538999999999997389914999
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEECCCCCCEEEEEE
Q ss_conf 43676602456415655431046789985712253889999999986983888550576677775786478864517999
Q gi|254780872|r 167 STINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNKWQLSAKNMDVNYMVL 246 (254)
Q Consensus 167 st~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~g~~~~p~~~~w~~~~~~~~vnY~~~ 246 (254)
||+|||+.||+++|++|||+++|+|+|||+|+|||+|+||.++++++||++.+++||.|||+.++|+++ +|++|||+++
T Consensus 150 sTiNrt~~S~l~~i~~AEyil~~vP~gTH~w~kFi~P~el~~~l~~~~~~~~~~~G~~ynp~~~~w~~~-~~~~vNY~~~ 228 (233)
T PRK05134 150 STLNRNLKSYLLAIVGAEYILRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIKGLTYNPLTNRWKLS-DDVDVNYMLA 228 (233)
T ss_pred ECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEC-CCCCCCEEEE
T ss_conf 726789899999999998886049999858666799999999999879957210007996567938988-9998145899
Q ss_pred EECCC
Q ss_conf 97587
Q gi|254780872|r 247 GHLPK 251 (254)
Q Consensus 247 ~~kp~ 251 (254)
++||.
T Consensus 229 ~~K~~ 233 (233)
T PRK05134 229 ARKPA 233 (233)
T ss_pred EECCC
T ss_conf 87189
No 3
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=100.00 E-value=0 Score=468.09 Aligned_cols=235 Identities=50% Similarity=0.933 Sum_probs=227.4
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHC
Q ss_conf 67898899999999988746888871267751756599999998865187644458800162888569856999999731
Q gi|254780872|r 8 YTTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQM 87 (254)
Q Consensus 8 ~~t~~~~ei~~F~~~a~~WwD~~g~~~~Lh~~N~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~ 87 (254)
+.++|..|+++|+++|..|||+.|+|+|||.+||+|.+||++.....+. +.|++|||||||+|.+|++||+.
T Consensus 9 ~~~id~~e~~~F~~la~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~~--------l~g~~vLDvGCGgG~Lse~mAr~ 80 (243)
T COG2227 9 TQNVDYKELDKFEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFD--------LPGLRVLDVGCGGGILSEPLARL 80 (243)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHCCC--------CCCCEEEEECCCCCHHHHHHHHC
T ss_conf 3047878877799988630687786345334054122132554420147--------77770887458832864999977
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 98169952135677888865310112111122100123211153013001243102688889988887521333215774
Q gi|254780872|r 88 GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 88 g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liis 167 (254)
|++|+|+|+|+.+|++|+.||.+++++++|.+.+++++....++||+|+|++|||||+||..++++|.+++||||.+++|
T Consensus 81 Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 81 GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEHHHHHCCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99469743876778999875442463225223329999724897448977358771699999999999862999289994
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEECCCCCCEEEEEEE
Q ss_conf 36766024564156554310467899857122538899999999869838885505766777757864788645179999
Q gi|254780872|r 168 TINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNKWQLSAKNMDVNYMVLG 247 (254)
Q Consensus 168 t~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~g~~~~p~~~~w~~~~~~~~vnY~~~~ 247 (254)
||||++++|+.+|++|||+++|+|+|||+|.+||+|+||..++..+|+++++..|+.|+|+.++|+++ ++.+|||++++
T Consensus 161 Tinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~~y~p~~~~~~l~-~~~~vNy~~~~ 239 (243)
T COG2227 161 TINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGLTYNPLTNSWKLS-NDVSVNYMVHA 239 (243)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHCCCCCCEEEEECCEEECCCCCEEEEC-CCCCCEEEEEE
T ss_conf 20138899999999899998745886335888619899987323579358850342650421346734-88641279994
Q ss_pred ECCC
Q ss_conf 7587
Q gi|254780872|r 248 HLPK 251 (254)
Q Consensus 248 ~kp~ 251 (254)
+||.
T Consensus 240 ~~~~ 243 (243)
T COG2227 240 QRPA 243 (243)
T ss_pred ECCC
T ss_conf 0579
No 4
>KOG1270 consensus
Probab=100.00 E-value=0 Score=433.88 Aligned_cols=244 Identities=38% Similarity=0.699 Sum_probs=221.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHH
Q ss_conf 77678988999999999887468888712677517565999999988651876444588001628885698569999997
Q gi|254780872|r 6 PNYTTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMA 85 (254)
Q Consensus 6 ~~~~t~~~~ei~~F~~~a~~WwD~~g~~~~Lh~~N~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la 85 (254)
+..+++|.+|+.||.++|.+|||++|.+++||+||+.|++||++.+......-.+...|+.|++|||+|||+|++|++||
T Consensus 29 ~s~~si~~~eV~~f~~la~~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLA 108 (282)
T KOG1270 29 ASTTSIDVDEVKKFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLA 108 (282)
T ss_pred CCEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHH
T ss_conf 31001638889998875434465445111245446433267788787404322887545578647872367550232357
Q ss_pred HCCCCEEEECCHHHHHHHHHHHHHCCCC-------CCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCCHHHHHHHHHHHC
Q ss_conf 3198169952135677888865310112-------111122100123211153013001243102688889988887521
Q gi|254780872|r 86 QMGATVTGIDPSTKNIAIAKNHANMKNI-------NIDYRVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLL 158 (254)
Q Consensus 86 ~~g~~V~giD~S~~~i~~Ak~~a~~~~~-------~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d~~~~l~~~~~~L 158 (254)
|+|++|+|||+|+.||++|+.|+....+ .++|.+.++|.+. ++||+|+|++|+|||.||..+++.+.++|
T Consensus 109 rlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsevleHV~dp~~~l~~l~~~l 185 (282)
T KOG1270 109 RLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEVLEHVKDPQEFLNCLSALL 185 (282)
T ss_pred HHCCEEEEECCHHHHHHHHHHHHHCCCHHCCCCCEEEEHHHCCHHHCC---CCCCEEEEHHHHHHHHCHHHHHHHHHHHH
T ss_conf 508856852655999999987510490330564146302015332145---65645441989998747899999999984
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEECCCC
Q ss_conf 33321577436766024564156554310467899857122538899999999869838885505766777757864788
Q gi|254780872|r 159 LSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNKWQLSAKN 238 (254)
Q Consensus 159 kpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~g~~~~p~~~~w~~~~~~ 238 (254)
||||.+|++|+||++.||+..|+.+|++++|+|+|||+|++||+|+|++.+++.+++++.++.|+.|+|++++|.++ ++
T Consensus 186 kP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v~G~~y~p~s~~w~~~-~~ 264 (282)
T KOG1270 186 KPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDVVGEVYNPISGQWLWS-KN 264 (282)
T ss_pred CCCCCEEEEEHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEEC-CC
T ss_conf 88982586411233777622112999988645888757787089999999998638534312020215546615762-66
Q ss_pred CCEEEEEEEECCCCC
Q ss_conf 645179999758777
Q gi|254780872|r 239 MDVNYMVLGHLPKTE 253 (254)
Q Consensus 239 ~~vnY~~~~~kp~~~ 253 (254)
.++||...|.|-+.+
T Consensus 265 ~~~~~~~~avk~~~~ 279 (282)
T KOG1270 265 TSLNYGIKAVKRKLQ 279 (282)
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 315689999998860
No 5
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.97 E-value=1e-30 Score=211.14 Aligned_cols=206 Identities=18% Similarity=0.281 Sum_probs=143.3
Q ss_pred HHHHH-HHHHHHHHCCCCCCCHHHHHHCHH---H-HHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCC
Q ss_conf 99999-999988746888871267751756---5-999999988651876444588001628885698569999997319
Q gi|254780872|r 14 DAINQ-FSNIASEWWEPTGKFKPLHQINPV---R-IKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMG 88 (254)
Q Consensus 14 ~ei~~-F~~~a~~WwD~~g~~~~Lh~~N~~---R-~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g 88 (254)
+.|.+ ||+.|+.+ |. ||.+ . ...-+..+.+.. .+..|.+|||+|||||.++..+++..
T Consensus 11 ~~V~~~Fd~iA~~Y-D~---------~N~~~S~G~~~~Wr~~~v~~l-------~~~~g~~vLDvgcGTG~~~~~l~~~~ 73 (239)
T PRK00216 11 EKVAEVFDSIAPKY-DL---------MNDLLSFGLHRVWRRKTIKWL-------GVRPGDKVLDLACGTGDLAIALAKAV 73 (239)
T ss_pred HHHHHHHHHHHHHH-HH---------HHHHHCCCHHHHHHHHHHHHC-------CCCCCCEEEEECCCCCHHHHHHHHHC
T ss_conf 99999998878788-58---------766750751999999999862-------78999989884577638799999972
Q ss_pred ---CCEEEECCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCE
Q ss_conf ---8169952135677888865310112--11112210012321115301300124310268888998888752133321
Q gi|254780872|r 89 ---ATVTGIDPSTKNIAIAKNHANMKNI--NIDYRVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGL 163 (254)
Q Consensus 89 ---~~V~giD~S~~~i~~Ak~~a~~~~~--~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~ 163 (254)
++|+|+|+|++||++|+.++...+. +++|.+++++++|+.+++||+|+|..+|+|++|+..+|+|++|+|||||.
T Consensus 74 ~~~~~v~g~D~S~~ML~~A~~k~~~~~~~~~i~~~~~da~~lpf~d~sfD~v~~~f~l~~~~d~~~~l~E~~RVLkPGG~ 153 (239)
T PRK00216 74 GETGEVVGLDFSEGMLAVGREKLLDKGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGR 153 (239)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCEE
T ss_conf 99767999919889999999999973898885079823556888766676500261567148679999999987664808
Q ss_pred EEEE---CCCCCCHHHHHHHHHH---HHHCCCCCCCCCCH-------HHCCCHHHHHHHHHHCCCEEEEEEEEEECCCCC
Q ss_conf 5774---3676602456415655---43104678998571-------225388999999998698388855057667777
Q gi|254780872|r 164 MFIS---TINRNLKAMLLAIIGA---EYLLQWLPKGTHQY-------DKFIKPTEMECFLAANKVKIIDRVGVVYNVFCN 230 (254)
Q Consensus 164 liis---t~Nr~~~s~~~~i~~a---e~il~~~P~gtH~~-------~~Fi~p~el~~~l~~~g~~~~~~~g~~~~p~~~ 230 (254)
++|- .|...+...+...+.- ..+-+++..+-..| ..|.+|+++.++++++||+.++.+.+. .
T Consensus 154 l~ilefs~p~~~~~~~~y~~Y~~~ilP~ig~~~~~~~~aY~YL~~Si~~fp~~~~~~~~l~~aGF~~v~~~~l~----~- 228 (239)
T PRK00216 154 LVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLVSKNAEAYRYLAESIRAFPDQEELAAMMEEAGFERVKYRNLT----G- 228 (239)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECC----C-
T ss_conf 99997589997688999999999999999999719878887699999988899999999998799678899878----8-
Q ss_pred EEEECCCCCCEEEEEEEECC
Q ss_conf 57864788645179999758
Q gi|254780872|r 231 KWQLSAKNMDVNYMVLGHLP 250 (254)
Q Consensus 231 ~w~~~~~~~~vnY~~~~~kp 250 (254)
.+-.+..|+||
T Consensus 229 ---------Gi~~i~~~~Kp 239 (239)
T PRK00216 229 ---------GIVALHVGYKP 239 (239)
T ss_pred ---------CEEEEEEEECC
T ss_conf ---------76999999892
No 6
>PRK11036 putative metallothionein SmtA; Provisional
Probab=99.97 E-value=9.7e-30 Score=205.14 Aligned_cols=197 Identities=26% Similarity=0.352 Sum_probs=145.5
Q ss_pred HHHHHHHHHCC-CCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCCCEEEECC
Q ss_conf 99999887468-88871267751756599999998865187644458800162888569856999999731981699521
Q gi|254780872|r 18 QFSNIASEWWE-PTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDP 96 (254)
Q Consensus 18 ~F~~~a~~WwD-~~g~~~~Lh~~N~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~~V~giD~ 96 (254)
.||.+|+.+-. -.|.-| -.+|..-+.+-+........ ..| .+|||+|||+|.+|..||++|++||++|+
T Consensus 5 nFd~ia~kF~~~iYgt~K-----G~iR~avl~~dl~~~l~~l~--~~p---lrVLDvG~G~G~~a~~lA~~Gh~Vt~~D~ 74 (256)
T PRK11036 5 NFDDIAEKFSRNIYGTTK-----GQIRQAIVWQDLDRLLAELG--PRP---LRVLDAGGGEGQTAIKMAELGHQVTLCDL 74 (256)
T ss_pred CHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHHHHHHCC--CCC---CEEEEECCCCCHHHHHHHHCCCEEEEECC
T ss_conf 466789999984547772-----28999999999999998469--999---83998379877989999977997998669
Q ss_pred HHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCC-CCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 35677888865310112--11112210012321-1153013001243102688889988887521333215774367660
Q gi|254780872|r 97 STKNIAIAKNHANMKNI--NIDYRVSCAEEIAE-TDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNL 173 (254)
Q Consensus 97 S~~~i~~Ak~~a~~~~~--~i~~~~~~~~~l~~-~~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~~ 173 (254)
|++||+.|+.++...++ +++|+++++++++. .+++||+|+|+.||||++||..+|..+.++|||||.+-+...|++-
T Consensus 75 S~~mL~~A~~~a~~~gv~~~~~~v~~~~q~l~~~~~~~fDlVlcHaVLE~v~dP~~~l~~l~~~lkPGG~lSLmfyN~~a 154 (256)
T PRK11036 75 SAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANG 154 (256)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCEEEEEHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCHHH
T ss_conf 99999999999886496612798856899885423688667865136772378999999999975899379998428516
Q ss_pred HHHHHHHHHH-HHHCCCCCCCCC---CHHHCCCHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 2456415655-431046789985---71225388999999998698388855057
Q gi|254780872|r 174 KAMLLAIIGA-EYLLQWLPKGTH---QYDKFIKPTEMECFLAANKVKIIDRVGVV 224 (254)
Q Consensus 174 ~s~~~~i~~a-e~il~~~P~gtH---~~~~Fi~p~el~~~l~~~g~~~~~~~g~~ 224 (254)
.-+-..+.|- .+++..+|...- ...+-..|+++.+|++.+||++....|+.
T Consensus 155 lv~~n~l~Gnf~~a~~~~~~~~~~~LtP~~p~~p~~V~~~l~~~g~~i~~~~GIR 209 (256)
T PRK11036 155 LLMHNMVAGNFDYVQAGMPKRKKRTLSPQYPRDPAQVYQWLEEAGWQIMGKTGVR 209 (256)
T ss_pred HHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 9999998258999973063445521689999999999999997798277667899
No 7
>pfam01209 Ubie_methyltran ubiE/COQ5 methyltransferase family.
Probab=99.97 E-value=1.3e-29 Score=204.28 Aligned_cols=191 Identities=19% Similarity=0.306 Sum_probs=136.6
Q ss_pred HHHHH-HHHHHHHHCCCCCCCHHHHHHCHH-----HHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHC
Q ss_conf 99999-999988746888871267751756-----599999998865187644458800162888569856999999731
Q gi|254780872|r 14 DAINQ-FSNIASEWWEPTGKFKPLHQINPV-----RIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQM 87 (254)
Q Consensus 14 ~ei~~-F~~~a~~WwD~~g~~~~Lh~~N~~-----R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~ 87 (254)
+.|.. ||+.|+.+ |. +|.+ -..| ++.+.+.. .+.+|.+|||+|||||.++..+++.
T Consensus 7 ~~V~~mF~~Ia~~Y-D~---------~N~~~S~G~~~~W-R~~~v~~~-------~~~~g~~vLDl~cGTG~~~~~l~~~ 68 (233)
T pfam01209 7 QRVGDVFSSVASKY-DL---------MNDVISFGIHRLW-KDFTMKCM-------GVKRGNKFLDVAGGTGDWTFGLSDS 68 (233)
T ss_pred HHHHHHHHHHHHHH-HH---------HHHHHCCCHHHHH-HHHHHHHC-------CCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 99999998636588-78---------8878607349999-99999861-------8999998998254058899999998
Q ss_pred ---CCCEEEECCHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCE
Q ss_conf ---9816995213567788886531011-211112210012321115301300124310268888998888752133321
Q gi|254780872|r 88 ---GATVTGIDPSTKNIAIAKNHANMKN-INIDYRVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGL 163 (254)
Q Consensus 88 ---g~~V~giD~S~~~i~~Ak~~a~~~~-~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~ 163 (254)
.++|+|+|+|++|+++|+.+++..+ .+++|.+++++++|+.+++||+|+|...|+|++|+..+++|++|+|||||.
T Consensus 69 ~~~~~~v~gvD~S~~ML~~a~~k~~~~~~~~i~~~~~da~~lpf~d~sfD~v~~~fglrn~~d~~~al~E~~RVLKPGG~ 148 (233)
T pfam01209 69 AGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFLQGNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGR 148 (233)
T ss_pred HCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCE
T ss_conf 49997499996999999999999985699983699821666886665657314210121258889999999987278978
Q ss_pred EEE---ECCCCCCHHHHHHHHHHHHHC----CCCCCC--CCCH-----HHCCCHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 577---436766024564156554310----467899--8571-----22538899999999869838885505
Q gi|254780872|r 164 MFI---STINRNLKAMLLAIIGAEYLL----QWLPKG--THQY-----DKFIKPTEMECFLAANKVKIIDRVGV 223 (254)
Q Consensus 164 lii---st~Nr~~~s~~~~i~~ae~il----~~~P~g--tH~~-----~~Fi~p~el~~~l~~~g~~~~~~~g~ 223 (254)
+++ +.|+..+...+...+. .+++ +++-.. ...| ..|.+|+|+.++++++||+.+..+.+
T Consensus 149 l~ilefs~P~~~~~~~~~~~Y~-~~ilP~ig~~~~~~~~aY~YL~~Si~~fp~~~~~~~~l~~~GF~~v~~~~l 221 (233)
T pfam01209 149 VVCLEFSKPENPLLSQAYELYF-KYVMPFMGKMFAKSYKSYQYLQESIRDFPDQKTLASMFEKAGFKSVGYESL 221 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf 9999788887779999999999-535999779984998998519999998799999999999879977789987
No 8
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities . Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity.
Probab=99.96 E-value=2.5e-29 Score=202.56 Aligned_cols=187 Identities=23% Similarity=0.386 Sum_probs=139.1
Q ss_pred HHHHHHHHCCCCCCCHHHHHHCHHHHHH-H----HHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCC-----
Q ss_conf 9999887468888712677517565999-9----99988651876444588001628885698569999997319-----
Q gi|254780872|r 19 FSNIASEWWEPTGKFKPLHQINPVRIKY-I----QDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMG----- 88 (254)
Q Consensus 19 F~~~a~~WwD~~g~~~~Lh~~N~~R~~~-I----~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g----- 88 (254)
|++.|+++ | .||.+ +.| + ++...+...... ..-++.+||||.||||-++..+++.+
T Consensus 5 F~~iA~~Y-D---------~~N~~-lSfG~h~~Wr~~~~~~~~~~~---E~k~~~~~LDvA~GTGD~a~~~~k~~~~~~~ 70 (242)
T TIGR01934 5 FDRIAPKY-D---------LLNDL-LSFGLHRLWRRRAVKLIGVQL---EGKKGQKVLDVACGTGDLAIELAKKAGKVGK 70 (242)
T ss_pred HHHHHHHH-H---------HHHHH-HHHHHHHHHHHHHHHHHHHHC---CCCCCCCEEEEECCHHHHHHHHHHHCCCCCC
T ss_conf 87764435-2---------67557-767432899999999878623---6888897788723839999999863575553
Q ss_pred ------CCEEEECCHHHHHHHHHHHHHCC-----CCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCCHHHHHHHHHHH
Q ss_conf ------81699521356778888653101-----1211112210012321115301300124310268888998888752
Q gi|254780872|r 89 ------ATVTGIDPSTKNIAIAKNHANMK-----NINIDYRVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSL 157 (254)
Q Consensus 89 ------~~V~giD~S~~~i~~Ak~~a~~~-----~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d~~~~l~~~~~~ 157 (254)
++|||+|+|++||++|++++... ..+++|.++++++||+.|++||+|++.-=|.-+.|+..+|+|++|+
T Consensus 71 a~~~~~~~vtg~D~S~~ML~~a~kk~~~~~r~~~~~~~~f~~~dA~~LPF~D~sFD~~TiaFGlRN~~d~~~aL~E~~RV 150 (242)
T TIGR01934 71 AAETERAKVTGVDFSEEMLEVAKKKAPNEERKALSANVSFIEADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRV 150 (242)
T ss_pred CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHEECHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHC
T ss_conf 35776337898707988999998741342003332164211000550879986244466402554746867898773110
Q ss_pred CCCCCEEEE---ECCCC-CCHHHHHHHHHHHHHCCCCC-------CCCCCHH-------HCCCHHHHHHHHHHCCCEEEE
Q ss_conf 133321577---43676-60245641565543104678-------9985712-------253889999999986983888
Q gi|254780872|r 158 LLSNGLMFI---STINR-NLKAMLLAIIGAEYLLQWLP-------KGTHQYD-------KFIKPTEMECFLAANKVKIID 219 (254)
Q Consensus 158 LkpgG~lii---st~Nr-~~~s~~~~i~~ae~il~~~P-------~gtH~~~-------~Fi~p~el~~~l~~~g~~~~~ 219 (254)
|||||.|+| ++|+. .+.+-++. -|...+|| ++++.|. .|.++++|.++++++||+.++
T Consensus 151 LKpgG~l~iLEf~~P~~~~~~~~~Y~----~Y~~~v~P~~G~~~s~~~~aY~YL~eSi~~FP~~~~l~~~~~~aGF~~~~ 226 (242)
T TIGR01934 151 LKPGGRLVILEFSKPANGAFLKKFYK----FYLKNVLPSIGGLISKNKEAYEYLPESIRAFPSQEELAAMLKEAGFEEVR 226 (242)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHH----HHHHCHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEE
T ss_conf 18898799840786764168899999----88500037777774078866577889987538988999999973863211
Q ss_pred EEEE
Q ss_conf 5505
Q gi|254780872|r 220 RVGV 223 (254)
Q Consensus 220 ~~g~ 223 (254)
.+-+
T Consensus 227 ~~~l 230 (242)
T TIGR01934 227 YRSL 230 (242)
T ss_pred ECCC
T ss_conf 0030
No 9
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.95 E-value=4.7e-27 Score=188.47 Aligned_cols=180 Identities=22% Similarity=0.328 Sum_probs=130.7
Q ss_pred CCCCHHHHHH-HHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHC
Q ss_conf 7898899999-999988746888871267751756599999998865187644458800162888569856999999731
Q gi|254780872|r 9 TTKNQDAINQ-FSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQM 87 (254)
Q Consensus 9 ~t~~~~ei~~-F~~~a~~WwD~~g~~~~Lh~~N~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~ 87 (254)
.++|+.-|.+ |++-|.++ |.. ..+. | .+.+.+...+. +.+..+|||+|||||.++..+++.
T Consensus 2 ~~idK~~V~~~F~raA~~Y-d~~---A~~Q-----~--~~a~~Ll~~l~-------~~~~~~vLDlGcGtG~~t~~l~~~ 63 (251)
T PRK10258 2 ATVNKQAIAAAFGRAAAHY-EQH---ADLQ-----R--QSADALLAMLP-------QRKFTHVLDAGCGPGWMSRYWRER 63 (251)
T ss_pred CCCCHHHHHHHHHHHHHHH-HHH---HHHH-----H--HHHHHHHHHCC-------CCCCCCEEEEEEHHHHHHHHHHHC
T ss_conf 8659999999998998658-773---6999-----9--99999997366-------578993999831002789999974
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 98169952135677888865310112111122100123211153013001243102688889988887521333215774
Q gi|254780872|r 88 GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 88 g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liis 167 (254)
+++|+|+|+|+.|++.|+.+ .....|.++++|.+|+.+++||+|+|..++++++||..+|++++|+|||||.++||
T Consensus 64 ~~~v~~~Dls~~Ml~~a~~~----~~~~~~~~~D~e~Lp~~~~sfDli~S~~~lqW~~d~~~~l~e~~rvLkPgG~l~fs 139 (251)
T PRK10258 64 GSQVTALDLSPPMLAQARQK----DAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred CCEEEEEECCHHHHHHHHHH----CCCHHHHHCHHHHCCCCCCCCCEEEECCCHHHCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99699995989999999874----86334353606309998788217855040452599999999999645899499998
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEE
Q ss_conf 36766024564156554310467899857122538899999999869838
Q gi|254780872|r 168 TINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKI 217 (254)
Q Consensus 168 t~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~ 217 (254)
|+...-..-+...+.+ +....| .+.|.++.++...+...+++.
T Consensus 140 t~g~~tl~ELr~a~~~------vd~~~h-~~~f~~~~~~~~~l~~~~~~~ 182 (251)
T PRK10258 140 TLVQGSLPELHQAWQA------VDERPH-ANRFLPPDAIEQALNGVRYQH 182 (251)
T ss_pred CCCCCCHHHHHHHHHH------HCCCCC-CCCCCCHHHHHHHHHHCCCEE
T ss_conf 1575768999999998------316776-678899999999986266624
No 10
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.95 E-value=2.3e-27 Score=190.35 Aligned_cols=155 Identities=19% Similarity=0.311 Sum_probs=119.3
Q ss_pred HHCCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCHHHHEECCCHH
Q ss_conf 01628885698569999997319--8169952135677888865310112-11112210012321115301300124310
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAETDEKFDIILNMEVIE 142 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~~~~~FD~V~~~~vle 142 (254)
+|.+|||||||||-++..+++.. ++|+|+|+|++||++|+.++...+. +++|.++++++||+++++||+|+|...|+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECHHHCCCCCCCCCEEEEEEHHH
T ss_conf 99879996687319999999965884499997999999999987432476632799705654988887658898651235
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEC---CCCCCHHHHHHHHHH----HHHCCCCCCCCCCH-------HHCCCHHHHHH
Q ss_conf 26888899888875213332157743---676602456415655----43104678998571-------22538899999
Q gi|254780872|r 143 HVDNIPYFIKTCCSLLLSNGLMFIST---INRNLKAMLLAIIGA----EYLLQWLPKGTHQY-------DKFIKPTEMEC 208 (254)
Q Consensus 143 Hv~d~~~~l~~~~~~LkpgG~liist---~Nr~~~s~~~~i~~a----e~il~~~P~gtH~~-------~~Fi~p~el~~ 208 (254)
+++|++.+|+|++|+|||||++++-- +..-+...++.-+.. ..+-+++..+...| .+|.+++++.+
T Consensus 131 nv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~ 210 (238)
T COG2226 131 NVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQ 210 (238)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 27878999999987626874999987689986016999999999747656212110684999999988885899899999
Q ss_pred HHHHCCCEEEEE
Q ss_conf 999869838885
Q gi|254780872|r 209 FLAANKVKIIDR 220 (254)
Q Consensus 209 ~l~~~g~~~~~~ 220 (254)
+++++||+.+.-
T Consensus 211 ~~~~~gf~~i~~ 222 (238)
T COG2226 211 MIEKAGFEEVRY 222 (238)
T ss_pred HHHHCCCEEEEE
T ss_conf 998668468766
No 11
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.95 E-value=6.6e-28 Score=193.75 Aligned_cols=169 Identities=23% Similarity=0.271 Sum_probs=128.2
Q ss_pred HHHCCEEEECCCHHHHHHHHHHC-C--CCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCHHHHEECCC
Q ss_conf 00162888569856999999731-9--8169952135677888865310112-111122100123211153013001243
Q gi|254780872|r 65 FKGLRILDLGCGGGLLSEPMAQM-G--ATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAETDEKFDIILNMEV 140 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s~~la~~-g--~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~~~~~FD~V~~~~v 140 (254)
-.|.+|||+|||+|..+..+|+. | .+|+|||+|+.||+.||.++.+.+. |++|++++++++|+.+++||+|++..|
T Consensus 72 ~pGe~VLDLGcG~G~d~~~aA~~VG~~G~ViGVD~s~~ML~~Ar~~a~~~G~~NVeF~~Gdae~LPl~D~SfDvViSncV 151 (258)
T PRK11873 72 KPGETVLDLGSGAGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADGSVDVIISNCV 151 (258)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCE
T ss_conf 99998999478877759999998699977999859999999999999975997559999555313689883519988246
Q ss_pred HHCCCCHHHHHHHHHHHCCCCCEEEEECC--CCCCHH--------HHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHH
Q ss_conf 10268888998888752133321577436--766024--------56415655431046789985712253889999999
Q gi|254780872|r 141 IEHVDNIPYFIKTCCSLLLSNGLMFISTI--NRNLKA--------MLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFL 210 (254)
Q Consensus 141 leHv~d~~~~l~~~~~~LkpgG~liist~--Nr~~~s--------~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l 210 (254)
|+|++|+..+|++++|+|||||+++||.+ .+.+.. |...|-|| ++.+++.+++
T Consensus 152 lnl~pDk~~vl~E~~RVLKPGGRl~ISDiv~~~~lP~~~r~d~~l~~~CiaGA-----------------~~~~~~~~~l 214 (258)
T PRK11873 152 INLSPDKERVFREAFRVLKPGGRFAISDVVLTGELPEELRNDAALYAGCVAGA-----------------LSVEEYLAML 214 (258)
T ss_pred EECCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHCHHHHHCCCCCC-----------------CCHHHHHHHH
T ss_conf 76079879999999996288978999974127779999985989873120366-----------------8599999999
Q ss_pred HHCCCEEEEEEEE-EECCCCCEEEECCCCC---CEEEEEEEECCC
Q ss_conf 9869838885505-7667777578647886---451799997587
Q gi|254780872|r 211 AANKVKIIDRVGV-VYNVFCNKWQLSAKNM---DVNYMVLGHLPK 251 (254)
Q Consensus 211 ~~~g~~~~~~~g~-~~~p~~~~w~~~~~~~---~vnY~~~~~kp~ 251 (254)
+++||+-+++.-- .+..+...|- ...+. -+...+.|+||.
T Consensus 215 ~~aGF~~i~i~~~~~~~~~~~~~~-~~~~~~~~~~s~~i~a~kp~ 258 (258)
T PRK11873 215 AEAGFVDITIEPKRDSREFLRGDA-SARQLDGYIFSATVEARKPA 258 (258)
T ss_pred HHCCCCCEEEEECHHHHHHHHHHC-CCCCCCCEEEEEEEEEECCC
T ss_conf 976998329985532799998407-75771227999999986789
No 12
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.95 E-value=4.7e-27 Score=188.48 Aligned_cols=194 Identities=22% Similarity=0.376 Sum_probs=141.2
Q ss_pred CCHHHHHH-HHHHHHHHCCC-CCCCHHHHHHCHHHH------HHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHH
Q ss_conf 98899999-99998874688-887126775175659------99999988651876444588001628885698569999
Q gi|254780872|r 11 KNQDAINQ-FSNIASEWWEP-TGKFKPLHQINPVRI------KYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSE 82 (254)
Q Consensus 11 ~~~~ei~~-F~~~a~~WwD~-~g~~~~Lh~~N~~R~------~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~ 82 (254)
-++.+|++ ||.-|.+=|+. .|. .|. |.+|. +-..+.+...+. ....++|++|||+|||+|.++.
T Consensus 8 ~~r~~v~~YFd~ta~~~W~rltsd-~pV---s~vr~tVR~Gr~~mr~~~l~wl~----~~~dl~G~rVLDaGCGtG~la~ 79 (230)
T PRK07580 8 EHKSEVRTYFNGTGFDRWARIYSD-APV---SKVRATVRAGHQRMRDTVLSWLP----ADGDLTGLSILDAGCGTGSLSI 79 (230)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHCC-CCC---HHHHHHHHHHHHHHHHHHHHHHH----HCCCCCCCEEEECCCCCCHHHH
T ss_conf 999999998464789999997088-972---59999999769999999999731----0599789989881878678799
Q ss_pred HHHHCCCCEEEECCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCC--HHHHHHHHHHHC
Q ss_conf 9973198169952135677888865310112--111122100123211153013001243102688--889988887521
Q gi|254780872|r 83 PMAQMGATVTGIDPSTKNIAIAKNHANMKNI--NIDYRVSCAEEIAETDEKFDIILNMEVIEHVDN--IPYFIKTCCSLL 158 (254)
Q Consensus 83 ~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~--~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d--~~~~l~~~~~~L 158 (254)
.||++|++|+|+|+|+.||++|++++...++ +|+|.+++.+.+ .++||.|+|++||+|++. ....+..+...
T Consensus 80 ~LA~~Ga~V~avDiS~~mi~~A~~Ra~~~g~~~~v~F~~gDle~~---~G~FD~Vv~mdvLiHYp~~d~~~~l~~la~~- 155 (230)
T PRK07580 80 PLARRGAKVVASDISPQMVEEARERAPEAGLDGNITFEVGDLESL---LGSFDTVVCLDVLIHYPQEDAERMLAHLASL- 155 (230)
T ss_pred HHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCC---CCCCCCHHHCCCEEECCHHHHHHHHHHHHHC-
T ss_conf 999779989998389999999997558627876753896676545---7986602333715545788999999999725-
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCH-HHCCCHHHHHHHHHHCCCEEEEEEE
Q ss_conf 333215774367660245641565543104678998571-2253889999999986983888550
Q gi|254780872|r 159 LSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQY-DKFIKPTEMECFLAANKVKIIDRVG 222 (254)
Q Consensus 159 kpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~-~~Fi~p~el~~~l~~~g~~~~~~~g 222 (254)
.+|.++||...+|+.-.++ .++=++.|++.+.. -+.++|+.|...++.+||++.....
T Consensus 156 -~~~~~ifTfAP~T~lL~~m-----~~iGklFP~~drsp~~~p~~~~~l~~~l~~~g~~v~r~~r 214 (230)
T PRK07580 156 -TRGSLIFTFAPYTPLLALL-----HWIGGFFPGPSRTTRIYPHREKGIRRALAEAGFKVVRTER 214 (230)
T ss_pred -CCCEEEEEECCCCHHHHHH-----HHHHHHCCCCCCCCCEEECCHHHHHHHHHHCCCEEEECCC
T ss_conf -5885999968986999999-----9986438999999726973889999999966986751233
No 13
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.94 E-value=6e-27 Score=187.82 Aligned_cols=139 Identities=19% Similarity=0.309 Sum_probs=117.5
Q ss_pred CCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCHHHHEECCCHHC
Q ss_conf 62888569856999999731--981699521356778888653101121--11122100123211153013001243102
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNIN--IDYRVSCAEEIAETDEKFDIILNMEVIEH 143 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~~--i~~~~~~~~~l~~~~~~FD~V~~~~vleH 143 (254)
++|||||||+|..+..+++. +.+|+|+|+|+.|++.|+++++..++. +.+.++++..+|+++ +||+|++++|+||
T Consensus 1 krVLDiGCG~G~~~~~LA~~~p~~~v~GvDiS~~~ie~Ar~r~~~~gl~~rv~~~~~Da~~lpf~d-~FD~V~s~evl~H 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPD-TYDLVFGFEVIHH 79 (224)
T ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCC-CCCEEEHHHHHHC
T ss_conf 908998366888899999977998899997999999999999997299865147852110399999-8356768535765
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 688889988887521333215774367660245641565543104678998571225388999999998698388855
Q gi|254780872|r 144 VDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRV 221 (254)
Q Consensus 144 v~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~ 221 (254)
++|+..+|++++|+|||||.++++.+-.|..+ .+..++|+ .+|.+.+|..+++..++|.+++..
T Consensus 80 i~D~~~~l~ei~RvLKPGG~lviaD~~~n~~~------------~i~~~~~~--~~~~t~~eW~~ll~~~~l~~~~~v 143 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLS------------AIEHEETT--SYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEEEEECCCCC------------CCCCCCCC--CCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 39999999999987179849999985337888------------77787630--024789999999976785366522
No 14
>PRK08317 hypothetical protein; Provisional
Probab=99.94 E-value=1.1e-26 Score=186.12 Aligned_cols=153 Identities=20% Similarity=0.296 Sum_probs=118.4
Q ss_pred HHCCEEEECCCHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHH
Q ss_conf 0162888569856999999731---9816995213567788886531011211112210012321115301300124310
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIE 142 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~---g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vle 142 (254)
.|.+|||||||+|.++..|++. +.+|+|+|+|+.|++.|+.++...+.+++|.+++++++|+.+++||+|+|..+||
T Consensus 19 pG~~vLDiGcG~G~~~~~la~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~lp~~d~sfD~v~~~~~l~ 98 (241)
T PRK08317 19 PGERVLDVGCGPGNDLRELADRVGPEGRVVGIDRSEAMLALARERAAGLLSNVEFVRGDADGLPFPDESFDAVRSDRVLQ 98 (241)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCEEEHHHHHH
T ss_conf 97999996641749999999974999789999698899999999986228964999554643589888704562211576
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH---HHHHHCC-CCCCCCCCHHHCCCHHHHHHHHHHCCCEEE
Q ss_conf 268888998888752133321577436766024564156---5543104-678998571225388999999998698388
Q gi|254780872|r 143 HVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAII---GAEYLLQ-WLPKGTHQYDKFIKPTEMECFLAANKVKII 218 (254)
Q Consensus 143 Hv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~---~ae~il~-~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~ 218 (254)
|++||..+|++++|+|||||++++.-++ +-+....-. ....++. |...+.| -+ -+.+|..+++++||+.+
T Consensus 99 h~~d~~~~l~e~~RvLkPGG~~vi~d~D--w~~~~~~~~~~~~~~~i~~~~~~~~~~---~~-~gr~L~~~l~~aG~~~v 172 (241)
T PRK08317 99 HLEDPRRALAEMARVLRPGGRAVVLDTD--WDTLVIHSGDRALMRKILNFWSDHFAN---PW-LGRRLPGLFREAGLTDI 172 (241)
T ss_pred HCCCHHHHHHHHHHHCCCCCEEEEEECC--CCCCCCCCCCHHHHHHHHHHHHHHCCC---CH-HHHHHHHHHHHCCCCEE
T ss_conf 2258999999999981888389999667--886742898889999999999974789---20-78999999998699056
Q ss_pred EEEEEE
Q ss_conf 855057
Q gi|254780872|r 219 DRVGVV 224 (254)
Q Consensus 219 ~~~g~~ 224 (254)
++....
T Consensus 173 ~~~~~~ 178 (241)
T PRK08317 173 EVEPYT 178 (241)
T ss_pred EEEEEE
T ss_conf 888877
No 15
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.94 E-value=4e-26 Score=182.68 Aligned_cols=145 Identities=23% Similarity=0.360 Sum_probs=120.1
Q ss_pred HHCCEEEECCCHHHHHHHHHHC-CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCC
Q ss_conf 0162888569856999999731-981699521356778888653101121111221001232111530130012431026
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM-GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHV 144 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~-g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv 144 (254)
.|++|||||||.|--+..||+. |++|+|||+|+.|++.|+.++... .+++|.++++.++++++++||+|+|.+++.|+
T Consensus 52 ~~~kVLDvGCG~GG~a~~LA~~yg~~V~GiDls~~~~~~A~er~~~~-~~v~f~~~d~~~~~f~d~sFDvV~S~dailHi 130 (263)
T PTZ00098 52 ANSKVLDIGSGLGGGCKYINEKYGAHTHGIDICEKIVNIAKERNQDK-AKIEFEAKDILKKDFPENNFDLIYSRDAILHL 130 (263)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCC-CCEEEEECCCCCCCCCCCCEEEEEEEHHHHCC
T ss_conf 99868886888788999999974987999858899999999855125-85489967853677886745589875022308
Q ss_pred C--CHHHHHHHHHHHCCCCCEEEEECCCCC---CHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEE
Q ss_conf 8--888998888752133321577436766---02456415655431046789985712253889999999986983888
Q gi|254780872|r 145 D--NIPYFIKTCCSLLLSNGLMFISTINRN---LKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIID 219 (254)
Q Consensus 145 ~--d~~~~l~~~~~~LkpgG~liist~Nr~---~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~ 219 (254)
| |...++++++|+|||||.|+++++-+. ..|-.+ .|||.. + .| ...+|++..++++++||..+.
T Consensus 131 p~~DK~~l~~e~~RvLKPGG~llitDw~~~~~~~~s~~~----~~yi~~---r---~~-~l~s~~~Y~~~l~~aGF~~v~ 199 (263)
T PTZ00098 131 SLADKKKLFEKCYKWLKPNGILLITDYCADEIENWDDEF----KAYIKK---R---KY-TLIPIEEYADIIKACKFKNVE 199 (263)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHH----HHHHHH---C---CC-CCCCHHHHHHHHHHCCCCEEE
T ss_conf 824399999999998468878999750135789973989----999984---6---87-667999999999977996678
Q ss_pred EEE
Q ss_conf 550
Q gi|254780872|r 220 RVG 222 (254)
Q Consensus 220 ~~g 222 (254)
..-
T Consensus 200 ~~D 202 (263)
T PTZ00098 200 AKD 202 (263)
T ss_pred EEC
T ss_conf 751
No 16
>TIGR02072 BioC biotin biosynthesis protein BioC; InterPro: IPR011814 This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulphur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.; GO: 0009102 biotin biosynthetic process.
Probab=99.91 E-value=4.6e-24 Score=169.92 Aligned_cols=152 Identities=22% Similarity=0.383 Sum_probs=120.6
Q ss_pred CHHHCCEEEECCCHHHHHHHHHHCCC--CEEEECCHHHHHHHHHHHHH----CCC-CCCCCCCCCCCCCCCCCCC--HHH
Q ss_conf 80016288856985699999973198--16995213567788886531----011-2111122100123211153--013
Q gi|254780872|r 64 PFKGLRILDLGCGGGLLSEPMAQMGA--TVTGIDPSTKNIAIAKNHAN----MKN-INIDYRVSCAEEIAETDEK--FDI 134 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~~s~~la~~g~--~V~giD~S~~~i~~Ak~~a~----~~~-~~i~~~~~~~~~l~~~~~~--FD~ 134 (254)
.+...+|||+|||||.++..+.+... +++++|+|+.|+..|+.+.. ..+ .++.|.++|+|.++..+++ ||+
T Consensus 34 ~~~~~~vLd~GcGTG~~t~~l~~~~~~~~~~a~D~~~~ml~~a~~~~~~GWW~~~~~~~~f~~gD~E~l~~~~~~~~~DL 113 (272)
T TIGR02072 34 HFEPASVLDIGCGTGYLTRALLKRFPQAELIALDISEEMLAQAKEKLSEGWWQKNLKAVQFICGDIEKLPLEDSSFKFDL 113 (272)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEH
T ss_conf 44554356512685489999998688001233332567899999744678865760456666637771788766303412
Q ss_pred HEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCC-CCHHHHHHHHHH--HHHCCCCCCCCCCHHHCCCHHHHHHHHH
Q ss_conf 0012431026888899888875213332157743676-602456415655--4310467899857122538899999999
Q gi|254780872|r 135 ILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINR-NLKAMLLAIIGA--EYLLQWLPKGTHQYDKFIKPTEMECFLA 211 (254)
Q Consensus 135 V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist~Nr-~~~s~~~~i~~a--e~il~~~P~gtH~~~~Fi~p~el~~~l~ 211 (254)
|+|..+|+...||..+|++++++|||||.|++||+-. |+. =+...+.. |.| .. .-.-..|.+.+++.+++.
T Consensus 114 I~Sn~a~QW~~~~~~~l~~l~~~lk~gG~l~FStf~~~~l~-El~~~~~~~~~~I----D~-~~~~~~y~~~~~~~~~l~ 187 (272)
T TIGR02072 114 IVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLK-ELRQSFGQVSELI----DE-RSHGLRYLSLDELKALLK 187 (272)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHH-HHHHHHHHHHHHH----CC-CCCCCCCCCHHHHHHHHH
T ss_conf 75635887104788999999975287968998613541349-9999999999740----76-546789989899999986
Q ss_pred HCCCEEEEEE
Q ss_conf 8698388855
Q gi|254780872|r 212 ANKVKIIDRV 221 (254)
Q Consensus 212 ~~g~~~~~~~ 221 (254)
..||+.+++.
T Consensus 188 ~~~f~~~~~~ 197 (272)
T TIGR02072 188 NDGFELLKLE 197 (272)
T ss_pred HCCCCEEEEE
T ss_conf 1598415788
No 17
>pfam02353 CMAS Cyclopropane-fatty-acyl-phospholipid synthase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyse the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <= S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.
Probab=99.91 E-value=2.5e-24 Score=171.58 Aligned_cols=157 Identities=24% Similarity=0.375 Sum_probs=120.7
Q ss_pred HHCCEEEECCCHHHHHHHHHHC-CCCEEEECCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCHHHHEECCCHH
Q ss_conf 0162888569856999999731-981699521356778888653101121--1112210012321115301300124310
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM-GATVTGIDPSTKNIAIAKNHANMKNIN--IDYRVSCAEEIAETDEKFDIILNMEVIE 142 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~-g~~V~giD~S~~~i~~Ak~~a~~~~~~--i~~~~~~~~~l~~~~~~FD~V~~~~vle 142 (254)
.|.+|||||||.|-++..+|+. |.+|+||.+|+++.+.|+.+++..++. +++...+..++ +++||.|++.+++|
T Consensus 62 ~g~~vLDiGCGWG~~a~~~a~~~g~~v~giTlS~~Q~~~~~~r~~~~gl~~~v~v~~~Dyrd~---~~~fD~IvSiem~E 138 (273)
T pfam02353 62 PGMTLLDIGCGWGGLMRRAAERYDVNVVGLTLSKNQYKLARQRVAAEGLQRKVEVLLQDYRDF---DEPFDRIVSVGMFE 138 (273)
T ss_pred CCCEEEEECCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEECCHHHC---CCCCCEEEEEHHHH
T ss_conf 999899978880899999998479518999797899999999998708743212000626547---66666677651687
Q ss_pred CC--CCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH-----HHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCC
Q ss_conf 26--8888998888752133321577436766024564-----1565543104678998571225388999999998698
Q gi|254780872|r 143 HV--DNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLL-----AIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKV 215 (254)
Q Consensus 143 Hv--~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~-----~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~ 215 (254)
|| .+...+++.+.++|||||.+++.++-..-..+.. .-|...|| .|-| + ..+.+++...++++||
T Consensus 139 hvg~~~~~~~f~~i~~~LkpgG~~~iq~i~~~~~~~~~~~~~~~~fi~kyI---FPGG-~----lPs~~~~~~~~~~~~l 210 (273)
T pfam02353 139 HVGHENYDTFFKKLYNLLPPGGLMLLHTITGLHPDETSERGLPLKFIDKYI---FPGG-E----LPSISMIVESSSEAGF 210 (273)
T ss_pred HCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHCCCCCCHHHHHC---CCCC-C----CCCHHHHHHHHHHCCC
T ss_conf 628777999999999865889739999994257321010277420077760---7998-7----8999999999986894
Q ss_pred EEEEEE--EEEECCCCCEEE
Q ss_conf 388855--057667777578
Q gi|254780872|r 216 KIIDRV--GVVYNVFCNKWQ 233 (254)
Q Consensus 216 ~~~~~~--g~~~~p~~~~w~ 233 (254)
++.++. |.+|......|+
T Consensus 211 ~v~~~~~~g~HYa~TL~~W~ 230 (273)
T pfam02353 211 TVEDVESLRPHYAKTLDLWA 230 (273)
T ss_pred EEEEEEECCHHHHHHHHHHH
T ss_conf 88676767365999999999
No 18
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.91 E-value=5.4e-23 Score=163.26 Aligned_cols=143 Identities=18% Similarity=0.231 Sum_probs=112.2
Q ss_pred HHCCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHC
Q ss_conf 0162888569856999999731--98169952135677888865310112111122100123211153013001243102
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEH 143 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleH 143 (254)
.+.+|||+|||+|.++..|+++ +++|+|||.|++||+.|+++ ..+++|.++++++++ ..+.||+|+|..+||+
T Consensus 31 ~~~~vlDlGCG~G~~t~~l~~r~p~a~v~GiD~S~~Ml~~Ar~~----~~~~~f~~~D~~~~~-~~~~~D~ifSNaalhW 105 (252)
T PRK01683 31 NVEYVADLGCGPGNSTALLHQRWPAARITGIDSSPAMLAEARQA----LPDCQFVEADIRNWQ-PEQALDLIYANASLQW 105 (252)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH----CCCCEEEECCHHCCC-CCCCCCEEEEEEEHHH
T ss_conf 99989993774989999999977998799998989999999975----899838725042078-7678788956100450
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCC-CCHHH-HHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEE
Q ss_conf 6888899888875213332157743676-60245-641565543104678998571225388999999998698388
Q gi|254780872|r 144 VDNIPYFIKTCCSLLLSNGLMFISTINR-NLKAM-LLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKII 218 (254)
Q Consensus 144 v~d~~~~l~~~~~~LkpgG~liist~Nr-~~~s~-~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~ 218 (254)
++|+..++..+.+.|+|||.|.+..++. +-.|. ++.-...+.- ++.-.. ..|.+|.+-..+|+++|+++.
T Consensus 106 ~~d~~~~~~~~~~~L~PGG~la~Q~p~n~~~~sh~l~~e~a~~~~---~~~~~~--~~~~~~~~Y~~lL~~~g~~v~ 177 (252)
T PRK01683 106 LPDHYELFPHLVSLLAPQGVLAVQMPDNWLEPSHVLMREVAWEQN---YPDRGR--EPLLGVHAYYDLLAEAGCEVD 177 (252)
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH---CCCCCC--CCCCCHHHHHHHHHHCCCEEE
T ss_conf 787799999999824878799998898757699999999986654---240136--678998999999985787366
No 19
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase; InterPro: IPR010251 Chlorophyll and bacteriochlorophyll are essential photosynthetic pigments involved in oxygenic and non-oxygenic photosythesis respectively. They are both synthesised from protoporphyrin IX in complex pathways which share many common steps. The second committed step in both pathways is the methylation of magnesium protoporphyrin IX, catalysed by magnesium protoporphyrin O-methyltransferase with S-adenosyl methionine (SAM) as the methyl donor , , .Sequence alignments suggest that the protein contains the characteristic seven-stranded beta-sheet fold found in other SAM-dependent methyltransferases. This entry represents magnesium protoporphyrin O-methyltransferase from cyanobacteria and plants, where it is known as ChlM, and from other photosynthetic bacteria, where it is known as BchM.; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=99.90 E-value=1.2e-23 Score=167.34 Aligned_cols=197 Identities=24% Similarity=0.347 Sum_probs=136.0
Q ss_pred HHHHH-HHHHHHHHCCCCCCCHHHHHHCHHHHHHH--HHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCCC
Q ss_conf 99999-99998874688887126775175659999--9998865187644458800162888569856999999731981
Q gi|254780872|r 14 DAINQ-FSNIASEWWEPTGKFKPLHQINPVRIKYI--QDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGAT 90 (254)
Q Consensus 14 ~ei~~-F~~~a~~WwD~~g~~~~Lh~~N~~R~~~I--~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~~ 90 (254)
+.|++ ||.-|-+=|-.-.. .+ .|.+|-.-+ ++.+....-.-+..-.+++|++|||.|||||++|+.||+.|+.
T Consensus 3 ~~v~~YFd~~af~rW~~i~~-~~---vs~~r~~vR~Gr~~~~~~~l~wL~~d~~l~G~~vlDAGCGtGllsi~LAk~GA~ 78 (224)
T TIGR02021 3 EQVRHYFDGTAFQRWARIYG-DP---VSRVRQTVREGRAAMREKLLEWLPKDRSLKGKKVLDAGCGTGLLSIELAKRGAI 78 (224)
T ss_pred CCHHHCCCCCHHHHHHHHCC-CC---HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCE
T ss_conf 30210248738899998716-73---047899999769999999998546788987677775588931544988847986
Q ss_pred EEEECCHHHHHHHHHHHHHCCCC--C-CCCCCCCCCCCCCCCCCHHHHEECCCHHCCC--CHHHHHHHHHHHCCCCCEEE
Q ss_conf 69952135677888865310112--1-1112210012321115301300124310268--88899888875213332157
Q gi|254780872|r 91 VTGIDPSTKNIAIAKNHANMKNI--N-IDYRVSCAEEIAETDEKFDIILNMEVIEHVD--NIPYFIKTCCSLLLSNGLMF 165 (254)
Q Consensus 91 V~giD~S~~~i~~Ak~~a~~~~~--~-i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~--d~~~~l~~~~~~LkpgG~li 165 (254)
|.|+|+|+.||+.|+++++.... | ++|.++|++.+ ..++||.|+|++||=|-| |-..+|..+..+.| +.++
T Consensus 79 V~A~DIS~~mv~~A~~r~~~~~~~~nl~~FeV~Dl~s~--~~G~fD~VV~mDvlIHYp~~d~~~~l~~Laslt~--~~~~ 154 (224)
T TIGR02021 79 VKAVDISEQMVELARERAEKEDEAGNLVEFEVNDLESL--ELGKFDAVVAMDVLIHYPAEDIAKALEHLASLTK--ERVI 154 (224)
T ss_pred EEEEHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHH--CCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHC--CCEE
T ss_conf 86623768999999862100210167003545304441--3898555675212232022227999999887435--8648
Q ss_pred EEC-CCCCCHHHHHHHHHHHHHCCCCCCCCCC-HHHCCCHHHHHHHHHHC----CCEEEEEEEEE
Q ss_conf 743-6766024564156554310467899857-12253889999999986----98388855057
Q gi|254780872|r 166 IST-INRNLKAMLLAIIGAEYLLQWLPKGTHQ-YDKFIKPTEMECFLAAN----KVKIIDRVGVV 224 (254)
Q Consensus 166 ist-~Nr~~~s~~~~i~~ae~il~~~P~gtH~-~~~Fi~p~el~~~l~~~----g~~~~~~~g~~ 224 (254)
||. |--.+...+..| =+++|+---. --+.+.+.+|...+.+- |++++..+-+.
T Consensus 155 ftfAP~T~~l~~~~~I------G~lFP~s~R~t~~~~h~~~~~~R~l~~~eallG~~i~~~~~vS 213 (224)
T TIGR02021 155 FTFAPKTAYLAFLKAI------GELFPRSDRATAIYLHPEKDLERALGELEALLGWKISKEGRVS 213 (224)
T ss_pred EEECCCCHHHHHHHHH------HHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCEEEEECCEE
T ss_conf 9867876789999985------1027889888515207860388997667666331566311032
No 20
>PRK05785 hypothetical protein; Provisional
Probab=99.90 E-value=3.2e-23 Score=164.66 Aligned_cols=181 Identities=14% Similarity=0.252 Sum_probs=126.4
Q ss_pred CCHHHHHH-HHHHHHHHCCCCCCCHHHHHHCHH----HH-HHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHH
Q ss_conf 98899999-999988746888871267751756----59-9999998865187644458800162888569856999999
Q gi|254780872|r 11 KNQDAINQ-FSNIASEWWEPTGKFKPLHQINPV----RI-KYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPM 84 (254)
Q Consensus 11 ~~~~ei~~-F~~~a~~WwD~~g~~~~Lh~~N~~----R~-~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~l 84 (254)
-+.++|.+ ||+.|+.+ |. ||.+ .+ .| +....+.... ...-++.+|||+|||||-++..+
T Consensus 5 ~~~e~V~~mF~~IA~~Y-D~---------~N~~mSlG~~~~W-rr~~v~~~~~----~~~~~~~~vLDva~GTGd~a~~l 69 (225)
T PRK05785 5 ASWEELQEAYNKIPKAY-ER---------ANRLITFGNVDRW-RAEAVKLIYK----YDGKSPLKVLDAGAGPGNMAYHL 69 (225)
T ss_pred CCHHHHHHHHHHHHHHH-HH---------HHHHHHCCCHHHH-HHHHHHHHHH----HCCCCCCEEEEECCCCHHHHHHH
T ss_conf 88899999999887789-98---------8889828970999-9999999873----06788882899568843999996
Q ss_pred HHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 73198169952135677888865310112111122100123211153013001243102688889988887521333215
Q gi|254780872|r 85 AQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLM 164 (254)
Q Consensus 85 a~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~l 164 (254)
++. .+|+|+|+|++|+++|+.+. +..++++|++|+.+++||+|++.-.|.+++|++.+|+|++|++++.+.|
T Consensus 70 ~~~-~~v~~~D~s~~ML~~a~~~~-------~~v~~~ae~LPf~d~sFD~vt~~FglRN~~d~~~al~E~~RVlk~~~iL 141 (225)
T PRK05785 70 RKI-RYVVALDYTEEMLRLNLVAD-------DKVVGSFEAMPFRDKSFDLVMSGYALHASDDIEKAVAEFSRVSRYQVVV 141 (225)
T ss_pred HCC-CEEEEEECCHHHHHHHHHCC-------CCEEEHHHHCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHCCCEEEE
T ss_conf 347-86999988999999876432-------1137318539999882527763443004888999999999730977999
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCC-------CC--CCCH-------HHCCCHHHHHHHHHHCCCEEE
Q ss_conf 774367660245641565543104678-------99--8571-------225388999999998698388
Q gi|254780872|r 165 FISTINRNLKAMLLAIIGAEYLLQWLP-------KG--THQY-------DKFIKPTEMECFLAANKVKII 218 (254)
Q Consensus 165 iist~Nr~~~s~~~~i~~ae~il~~~P-------~g--tH~~-------~~Fi~p~el~~~l~~~g~~~~ 218 (254)
-+|+|...+...++... .-.++| .. .-.| ..|-+|+++.++++++|+..+
T Consensus 142 e~s~P~~~~~r~~y~~Y----~~~ilP~ig~l~~~~~~a~~Y~YL~~SI~~fP~~~~l~~~l~~~~~~~~ 207 (225)
T PRK05785 142 AIGKPDNVVARKLLSFY----LKYILPYLACLVGPKEVCREYKKIYYIYKRLPTNSQLRQIISRYADIKV 207 (225)
T ss_pred EECCCCCHHHHHHHHHH----HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCEEE
T ss_conf 96899847899999999----9656898628870999875241799999987999999999998487478
No 21
>pfam08003 Methyltransf_9 Protein of unknown function (DUF1698). This family contains many hypothetical proteins. It also includes two putative methyltransferase proteins.
Probab=99.88 E-value=2.2e-22 Score=159.45 Aligned_cols=149 Identities=27% Similarity=0.362 Sum_probs=111.7
Q ss_pred CCCHHHCCEEEECCCHHHHHHHHHHCCC-CEEEECCHHHHHHH--HHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEEC
Q ss_conf 5880016288856985699999973198-16995213567788--88653101121111221001232111530130012
Q gi|254780872|r 62 THPFKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAI--AKNHANMKNINIDYRVSCAEEIAETDEKFDIILNM 138 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG~G~~s~~la~~g~-~V~giD~S~~~i~~--Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~ 138 (254)
..+|+|++|||||||.|++...|...|+ .|+|||+|.-.+-. |-++.......+.+.-..+|+++.. +.||.|+|+
T Consensus 111 i~~L~gk~VlDVGcgNGYy~~RMlg~ga~~viGiDPs~lf~~QF~ai~~~~~~~~~~~~lPlg~E~lp~~-~~FDtVFsM 189 (315)
T pfam08003 111 LSPLKGRTILDVGCGNGYHMWRMLGEGAALVVGIDPSELFLCQFEAVRKLLGNDQRAHLLPLGIEQLPAL-EAFDTVFSM 189 (315)
T ss_pred HCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHCCCC-CCCCEEEEE
T ss_conf 2242689887517786499998622399879988981999999999999708987568853676548663-421557765
Q ss_pred CCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHH-----CC-CHHHHHHHHHH
Q ss_conf 4310268888998888752133321577436766024564156554310467899857122-----53-88999999998
Q gi|254780872|r 139 EVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDK-----FI-KPTEMECFLAA 212 (254)
Q Consensus 139 ~vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~-----Fi-~p~el~~~l~~ 212 (254)
+||.|-.+|...|.++++.|+|||.||+.|+= |-|.+. .-++|.++ |.+ || +...|..||++
T Consensus 190 GVLYHrrsP~~hL~~Lk~~L~~gGeLvLETlv---------i~gd~~-~~L~P~~r--YA~M~NV~fiPS~~~L~~Wl~r 257 (315)
T pfam08003 190 GVLYHRRSPLDHLLQLKDQLVKGGELVLETLV---------IEGDEN-TVLVPGDR--YAQMRNVYFIPSAAALKNWLEK 257 (315)
T ss_pred EEEECCCCHHHHHHHHHHHCCCCCEEEEEEEE---------ECCCCC-EEECCCCC--CCCCCCCEECCCHHHHHHHHHH
T ss_conf 44432689899999999852879789999877---------659887-25678854--1479875454788999999998
Q ss_pred CCCEEEEEEEE
Q ss_conf 69838885505
Q gi|254780872|r 213 NKVKIIDRVGV 223 (254)
Q Consensus 213 ~g~~~~~~~g~ 223 (254)
+||+.+.+.-.
T Consensus 258 ~GF~~i~~vd~ 268 (315)
T pfam08003 258 CGFVDVRIVDV 268 (315)
T ss_pred CCCCEEEEEEC
T ss_conf 59932788877
No 22
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=1.9e-22 Score=159.84 Aligned_cols=157 Identities=24% Similarity=0.418 Sum_probs=119.3
Q ss_pred HHCCEEEECCCHHHHHHHHHHC-CCCEEEECCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCHHHHEECCCHH
Q ss_conf 0162888569856999999731-981699521356778888653101121--1112210012321115301300124310
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM-GATVTGIDPSTKNIAIAKNHANMKNIN--IDYRVSCAEEIAETDEKFDIILNMEVIE 142 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~-g~~V~giD~S~~~i~~Ak~~a~~~~~~--i~~~~~~~~~l~~~~~~FD~V~~~~vle 142 (254)
.|++|||||||.|.++..+|+. |.+|+|+++|+++.+.|+.++...+++ ++.+..+-.+ ..+.||-|++.+++|
T Consensus 72 ~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd---~~e~fDrIvSvgmfE 148 (283)
T COG2230 72 PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD---FEEPFDRIVSVGMFE 148 (283)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCC---CCCCCCEEEEHHHHH
T ss_conf 99989874788449999999984997999668999999999999975997660799656210---324342055600688
Q ss_pred CCCC--HHHHHHHHHHHCCCCCEEEEECCCCCCHHH-HHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEE
Q ss_conf 2688--889988887521333215774367660245-6415655431046789985712253889999999986983888
Q gi|254780872|r 143 HVDN--IPYFIKTCCSLLLSNGLMFISTINRNLKAM-LLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIID 219 (254)
Q Consensus 143 Hv~d--~~~~l~~~~~~LkpgG~liist~Nr~~~s~-~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~ 219 (254)
||.. ...+|+.++++|+|||.+++.++...-..+ ...-+...||+ |-|. .-+.+++....+++||.+.+
T Consensus 149 hvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiF---PgG~-----lPs~~~i~~~~~~~~~~v~~ 220 (283)
T COG2230 149 HVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIF---PGGE-----LPSISEILELASEAGFVVLD 220 (283)
T ss_pred HHCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHCC---CCCC-----CCCHHHHHHHHHHCCCEEEH
T ss_conf 737102899999999645999659999966788554433278998578---9984-----89779999988756868842
Q ss_pred EE--EEEECCCCCEEE
Q ss_conf 55--057667777578
Q gi|254780872|r 220 RV--GVVYNVFCNKWQ 233 (254)
Q Consensus 220 ~~--g~~~~p~~~~w~ 233 (254)
.. |.+|......|.
T Consensus 221 ~~~~~~hYa~Tl~~W~ 236 (283)
T COG2230 221 VESLRPHYARTLRLWR 236 (283)
T ss_pred HHHHCHHHHHHHHHHH
T ss_conf 7640677899999999
No 23
>KOG1540 consensus
Probab=99.85 E-value=1.9e-20 Score=147.43 Aligned_cols=200 Identities=18% Similarity=0.287 Sum_probs=136.9
Q ss_pred CCCCCHHHHHH-----HHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHH
Q ss_conf 67898899999-----9999887468888712677517565999999988651876444588001628885698569999
Q gi|254780872|r 8 YTTKNQDAINQ-----FSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSE 82 (254)
Q Consensus 8 ~~t~~~~ei~~-----F~~~a~~WwD~~g~~~~Lh~~N~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~ 82 (254)
++|+.+.|-++ |++.|..+ | -||..=.-=|..-....+ .....|.+|+++||++||||-.+.
T Consensus 50 f~tV~e~eke~~V~~vF~~vA~~Y-D---------~mND~mSlGiHRlWKd~~---v~~L~p~~~m~~lDvaGGTGDiaF 116 (296)
T KOG1540 50 FKTVRESEKERLVHHVFESVAKKY-D---------IMNDAMSLGIHRLWKDMF---VSKLGPGKGMKVLDVAGGTGDIAF 116 (296)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-H---------HHHHHHHCCHHHHHHHHH---HHCCCCCCCCEEEEECCCCCHHHH
T ss_conf 120365553348999999888888-7---------788876212367888876---621587778758983477525677
Q ss_pred HHHHC--------CCCEEEECCHHHHHHHHHHHHHCCCCC----CCCCCCCCCCCCCCCCCHHHHEECCCHHCCCCHHHH
Q ss_conf 99731--------981699521356778888653101121----111221001232111530130012431026888899
Q gi|254780872|r 83 PMAQM--------GATVTGIDPSTKNIAIAKNHANMKNIN----IDYRVSCAEEIAETDEKFDIILNMEVIEHVDNIPYF 150 (254)
Q Consensus 83 ~la~~--------g~~V~giD~S~~~i~~Ak~~a~~~~~~----i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d~~~~ 150 (254)
.+.+. +.+|+.+|+++.||+++++++++.++. +.+.++++|+||+++.+||..++..-|+.+.|+++.
T Consensus 117 ril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~ 196 (296)
T KOG1540 117 RILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKA 196 (296)
T ss_pred HHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCEECCCCHHHH
T ss_conf 79876113457777617999389899999987775159776871699947701089997751158884211147877899
Q ss_pred HHHHHHHCCCCCEEEEE---CCCCCCHHHHHHHHHHHHHCCCCCC-CC------CCH-------HHCCCHHHHHHHHHHC
Q ss_conf 88887521333215774---3676602456415655431046789-98------571-------2253889999999986
Q gi|254780872|r 151 IKTCCSLLLSNGLMFIS---TINRNLKAMLLAIIGAEYLLQWLPK-GT------HQY-------DKFIKPTEMECFLAAN 213 (254)
Q Consensus 151 l~~~~~~LkpgG~liis---t~Nr~~~s~~~~i~~ae~il~~~P~-gt------H~~-------~~Fi~p~el~~~l~~~ 213 (254)
|++++|+|||||++.+- -.|..+..|++--+. ...+|. |. -.| ++|-+.+++..+.+++
T Consensus 197 l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ys----f~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~mieda 272 (296)
T KOG1540 197 LREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYS----FDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDA 272 (296)
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH----HHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 99998752778679999735454077899997122----23211055766521765454776650699889999999972
Q ss_pred CCEEEE-EEEEE
Q ss_conf 983888-55057
Q gi|254780872|r 214 KVKIID-RVGVV 224 (254)
Q Consensus 214 g~~~~~-~~g~~ 224 (254)
||.... ..++.
T Consensus 273 GF~~~~~ye~lt 284 (296)
T KOG1540 273 GFSSVNGYENLT 284 (296)
T ss_pred CCCCCCCCCCCE
T ss_conf 875102304421
No 24
>pfam08241 Methyltransf_11 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=99.85 E-value=1.5e-21 Score=154.27 Aligned_cols=94 Identities=34% Similarity=0.613 Sum_probs=85.4
Q ss_pred EEECCCHHHHHHHHHHC-CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCCHHH
Q ss_conf 88569856999999731-98169952135677888865310112111122100123211153013001243102688889
Q gi|254780872|r 71 LDLGCGGGLLSEPMAQM-GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVDNIPY 149 (254)
Q Consensus 71 LDiGCG~G~~s~~la~~-g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d~~~ 149 (254)
||||||+|.++..+++. +.+|+|+|+|+.|++.|+++... .++++.+++++++++.+++||+|+|.+++||++|+..
T Consensus 1 LDiGcG~G~~~~~l~~~~~~~v~giD~s~~~i~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~I~~~~~l~~~~~~~~ 78 (95)
T pfam08241 1 LDVGCGTGLLTEALARLPGAQVTGVDLSPEMLALARKRAQE--DGLTFVVGDAEDLPFPDESFDVVVSSLVLHHLPDPER 78 (95)
T ss_pred CCCCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCC--CCCEEEEECCCCCCCCCCCCCEEEECCCHHHCCCHHH
T ss_conf 96462499999999845799999994978998776631026--6947998033246755456859998330664689999
Q ss_pred HHHHHHHHCCCCCEEEE
Q ss_conf 98888752133321577
Q gi|254780872|r 150 FIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 150 ~l~~~~~~LkpgG~lii 166 (254)
++++++|+|||||++++
T Consensus 79 ~l~~~~r~LkpgG~l~i 95 (95)
T pfam08241 79 ALREIARVLKPGGKLVI 95 (95)
T ss_pred HHHHHHHHCCCCEEEEC
T ss_conf 99999987786949979
No 25
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.85 E-value=3.2e-21 Score=152.30 Aligned_cols=154 Identities=23% Similarity=0.421 Sum_probs=109.5
Q ss_pred HHCCEEEECCCHHHHHHHHHHC-CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCC
Q ss_conf 0162888569856999999731-981699521356778888653101121111221001232111530130012431026
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM-GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHV 144 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~-g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv 144 (254)
.|.+|||||||.|-++..+|+. |++|+||-+|++..+.|+.++ .+++++++..|-.+ ..++||.|++.+++|||
T Consensus 167 ~G~~VLeIGcGWGgla~~aA~~~g~~VtgiTlS~eQ~~~a~~r~--~gl~v~v~l~DYRd---~~g~fD~IvSIeM~EhV 241 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERC--AGLPVEIRLQDYRD---LNGQFDRIVSVGMFEHV 241 (383)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH--CCCCCEEEECCHHH---CCCCCCEEEEEEHHHHC
T ss_conf 99979885787499999999974975999858899999999997--38987899715244---36773559997148652
Q ss_pred --CCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEE-
Q ss_conf --88889988887521333215774367660245641565543104678998571225388999999998698388855-
Q gi|254780872|r 145 --DNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRV- 221 (254)
Q Consensus 145 --~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~- 221 (254)
.....+++.|.++|||||.+++.|+-.+-...-..-|...||+ |-|. .-++++|.+..+ ..|.+.++.
T Consensus 242 G~~~~~~yF~~i~~lLkp~G~~~lqtI~~~~~~~~~d~fI~kYIF---PGG~-----LPs~~~i~~a~~-~~~~~~d~~~ 312 (383)
T PRK11705 242 GPKNYRTYFEVVDRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIF---PNGC-----LPSVRQIAQASE-GLFVMEDWHN 312 (383)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHCC---CCCC-----CCCHHHHHHHHH-CCCEEEEEEC
T ss_conf 877799999999985699973999993366777765512888467---8987-----999899999985-8938986304
Q ss_pred -EEEECCCCCEEE
Q ss_conf -057667777578
Q gi|254780872|r 222 -GVVYNVFCNKWQ 233 (254)
Q Consensus 222 -g~~~~p~~~~w~ 233 (254)
|.+|......|+
T Consensus 313 ~g~hYa~TL~~Wr 325 (383)
T PRK11705 313 FGADYDRTLMAWH 325 (383)
T ss_pred CHHHHHHHHHHHH
T ss_conf 7564999999999
No 26
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=99.83 E-value=4.3e-20 Score=145.26 Aligned_cols=147 Identities=19% Similarity=0.250 Sum_probs=108.3
Q ss_pred HHCCEEEECCCHHHHHHHHHH-CCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCCCHHHHEECCCHH
Q ss_conf 016288856985699999973-19816995213567788886531011211112210012--321115301300124310
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQ-MGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE--IAETDEKFDIILNMEVIE 142 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~-~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~--l~~~~~~FD~V~~~~vle 142 (254)
.|.||||+|||.|.++..|.+ .+.+++|||++++++..|.. .++++ .+++++. .++.+++||+|+|++|||
T Consensus 13 ~~srVLDlGCG~G~ll~~L~~~k~v~~~GvEid~~~v~~a~~----kg~~V--i~~D~d~~l~~f~d~sFD~VIls~vLq 86 (193)
T pfam07021 13 PGSRVLDLGCGDGSLLYLLQEEKQVDGRGIELDAAGVAECVA----KGLSV--IQGDADKGLEHFPDKSFDYVILSQTLQ 86 (193)
T ss_pred CCCEEEEECCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHH----CCCCE--ECCCHHHCHHHCCCCCCCEEEHHHHHH
T ss_conf 969899836889899999987669876983389999999986----47954--507744597457767803786987998
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCH-HHHHHHHHHHH-HCCCCCCCCCCH-----HHCCCHHHHHHHHHHCCC
Q ss_conf 26888899888875213332157743676602-45641565543-104678998571-----225388999999998698
Q gi|254780872|r 143 HVDNIPYFIKTCCSLLLSNGLMFISTINRNLK-AMLLAIIGAEY-LLQWLPKGTHQY-----DKFIKPTEMECFLAANKV 215 (254)
Q Consensus 143 Hv~d~~~~l~~~~~~LkpgG~liist~Nr~~~-s~~~~i~~ae~-il~~~P~gtH~~-----~~Fi~p~el~~~l~~~g~ 215 (254)
|+.+|..+|+|+.|+ |+.+++|.||--.. .++...+.+.. +.+-+| |.| -.|.|-.+...+|++.|+
T Consensus 87 hl~~P~~vL~EmlRV---gk~~IVSfPNf~hw~~R~~ll~~GrmPvt~~lp---~~WydTpnih~~Ti~DFe~lc~~~~i 160 (193)
T pfam07021 87 ATRNPREVLDELLRI---GRRAIVSFPNFGHWRVRWSLLSRGRMPVTDLLP---YTWYDTPNIHFCTIRDFEELCEELNL 160 (193)
T ss_pred HHCCCHHHHHHHHHH---CCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 752819999998512---686999943614799999999478755589999---76148998474459999999998899
Q ss_pred EEEEEEEEE
Q ss_conf 388855057
Q gi|254780872|r 216 KIIDRVGVV 224 (254)
Q Consensus 216 ~~~~~~g~~ 224 (254)
++.+...+.
T Consensus 161 ~I~~~~~l~ 169 (193)
T pfam07021 161 KVEDRAALD 169 (193)
T ss_pred EEEEEEEEC
T ss_conf 899999975
No 27
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.81 E-value=5.5e-20 Score=144.64 Aligned_cols=101 Identities=33% Similarity=0.576 Sum_probs=87.6
Q ss_pred CEEEECCCHHHHHHHHHHC-CCCEEEECCHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCC-CCCCHHHHEECCCHHCC-
Q ss_conf 2888569856999999731-9816995213567788886531011-211112210012321-11530130012431026-
Q gi|254780872|r 69 RILDLGCGGGLLSEPMAQM-GATVTGIDPSTKNIAIAKNHANMKN-INIDYRVSCAEEIAE-TDEKFDIILNMEVIEHV- 144 (254)
Q Consensus 69 ~VLDiGCG~G~~s~~la~~-g~~V~giD~S~~~i~~Ak~~a~~~~-~~i~~~~~~~~~l~~-~~~~FD~V~~~~vleHv- 144 (254)
||||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+ .++.+.++++++++. .+++||+|+|..+++|.
T Consensus 1 rVLDiGcG~G~~~~~l~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~V~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CEEEEECCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHHCCHHHCCCEEEEEEECCEECCC
T ss_conf 99999888799999999568988999989888999999987532788646714886788632057531999917501065
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 8888998888752133321577436
Q gi|254780872|r 145 DNIPYFIKTCCSLLLSNGLMFISTI 169 (254)
Q Consensus 145 ~d~~~~l~~~~~~LkpgG~liist~ 169 (254)
+|+..++++++++|||||+++++++
T Consensus 81 ~~~~~~l~~~~~~LkpgG~~~is~~ 105 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLTLV 105 (107)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 1899999999987485819999998
No 28
>pfam08242 Methyltransf_12 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=99.81 E-value=2.7e-20 Score=146.56 Aligned_cols=94 Identities=22% Similarity=0.405 Sum_probs=76.6
Q ss_pred EEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCC-CCCCCCCCCCCCHHHHEECCCHHCCCC
Q ss_conf 88569856999999731--98169952135677888865310112-111122-100123211153013001243102688
Q gi|254780872|r 71 LDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNI-NIDYRV-SCAEEIAETDEKFDIILNMEVIEHVDN 146 (254)
Q Consensus 71 LDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~-~~~~~l~~~~~~FD~V~~~~vleHv~d 146 (254)
||+|||+|.++..+++. +++|+|+|+|+.|++.|+++....+. +..... ...+..+...++||+|+|.+|+||++|
T Consensus 1 LDvGcG~G~~~~~l~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vl~~~~~ 80 (98)
T pfam08242 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAIDLDPGSFDVVVASNVLHHLAD 80 (98)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHEEECCCHHHCCCCCCCEEEECCCHHHCCC
T ss_conf 98863379999999987899889998598899999999998713453111000000022203589889961041772589
Q ss_pred HHHHHHHHHHHCCCCCEE
Q ss_conf 889988887521333215
Q gi|254780872|r 147 IPYFIKTCCSLLLSNGLM 164 (254)
Q Consensus 147 ~~~~l~~~~~~LkpgG~l 164 (254)
|..+|++++|+|||||+|
T Consensus 81 ~~~~l~~~~r~LkpgG~l 98 (98)
T pfam08242 81 PRAVLRNLRRLLKPGGVL 98 (98)
T ss_pred HHHHHHHHHHHCCCCCCC
T ss_conf 999999999974999899
No 29
>TIGR00452 TIGR00452 methyltransferase, putative; InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . This is a set of proteobacterial proteins, which have homology in their central region to a large number of methyltransferases active on a variety of substrates. .
Probab=99.79 E-value=5.2e-19 Score=138.57 Aligned_cols=156 Identities=22% Similarity=0.299 Sum_probs=119.6
Q ss_pred CCCCCCHHHCCEEEECCCHHHHHHHHHHCCCC-EEEECCHHHHHHHHH--HHHHCCCCCCCCCCCCCCCCCCC-CCCHHH
Q ss_conf 44458800162888569856999999731981-699521356778888--65310112111122100123211-153013
Q gi|254780872|r 59 SDDTHPFKGLRILDLGCGGGLLSEPMAQMGAT-VTGIDPSTKNIAIAK--NHANMKNINIDYRVSCAEEIAET-DEKFDI 134 (254)
Q Consensus 59 ~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~~-V~giD~S~~~i~~Ak--~~a~~~~~~i~~~~~~~~~l~~~-~~~FD~ 134 (254)
.....||+|+.|||||||.|++...|-..|++ ++||||..-.+..-. ...-.+.-.+.+..-.+|++... .+.||+
T Consensus 114 l~~~~pL~~~~i~DVGC~~GY~~~~M~~~Gak~~VG~DP~~L~~~QFE~~~~ll~~~~~~~l~~LGiE~l~~~~pnAFD~ 193 (316)
T TIGR00452 114 LPHLSPLKGRTILDVGCGSGYHLWRMLGEGAKLLVGIDPTELFLCQFEAVRKLLDNDKRAILLPLGIEQLQELKPNAFDT 193 (316)
T ss_pred CCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCEE
T ss_conf 12466545777898336870688977620782787436578999999999987242355754036702223207641203
Q ss_pred HEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCH---HHCC-CHHHHHHHH
Q ss_conf 001243102688889988887521333215774367660245641565543104678998571---2253-889999999
Q gi|254780872|r 135 ILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQY---DKFI-KPTEMECFL 210 (254)
Q Consensus 135 V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~---~~Fi-~p~el~~~l 210 (254)
|+|++||.|-..|-..|..++..|+.+|-|++.|+ .|.+.+. .-++|..++-= -+|| +-..|..||
T Consensus 194 vFs~GVLYHRkSPLe~L~~L~~~L~~~GELVL~TL---------viD~d~~-~~LvP~~~YAkMkNVYFIPSv~aL~~Wl 263 (316)
T TIGR00452 194 VFSLGVLYHRKSPLEHLKQLKDQLVKKGELVLETL---------VIDGDLN-TVLVPKDRYAKMKNVYFIPSVSALKNWL 263 (316)
T ss_pred EEECCHHHCCCCCHHHHHHHHHHHHHCCCEEEEEE---------EECCCCC-EEECCCCCCCCEEEEEEHHHHHHHHHHH
T ss_conf 12202021155708999999999875793586534---------6607767-5864754442200014202389998888
Q ss_pred HHCCCEEEEEEEEE
Q ss_conf 98698388855057
Q gi|254780872|r 211 AANKVKIIDRVGVV 224 (254)
Q Consensus 211 ~~~g~~~~~~~g~~ 224 (254)
++.||+.+.+.-+.
T Consensus 264 ~kvGF~~~~i~~V~ 277 (316)
T TIGR00452 264 EKVGFENVRILDVL 277 (316)
T ss_pred HHCCCCEEEEEEEE
T ss_conf 74495314787510
No 30
>PRK06202 hypothetical protein; Provisional
Probab=99.75 E-value=8.3e-18 Score=131.09 Aligned_cols=145 Identities=26% Similarity=0.466 Sum_probs=103.5
Q ss_pred HCCEEEECCCHHHHHHHHHHCCC------CEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCC
Q ss_conf 16288856985699999973198------169952135677888865310112111122100123211153013001243
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQMGA------TVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEV 140 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~~g~------~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~v 140 (254)
..+|||||||+|-++..+++.+. +|+|||+++.++++|+.++...++. |...+.+.+...+++||+|+|+.+
T Consensus 62 ~~~VLDlGcG~Gdl~~~lar~a~~~g~~l~v~GiD~~~~ai~~Ar~~a~~~~~~--~~~~~~d~l~~~~~~~DvV~~sl~ 139 (233)
T PRK06202 62 PLTVLDLGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAIRFARANARRRGVT--FRFAVSDELVAEGERFDVVYSNHF 139 (233)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCC--EEEEEHHHHCCCCCCCCEEEHHHH
T ss_conf 728998347875799999999975599638999779889999998734036983--699734320245788757603246
Q ss_pred HHCCCCHH--HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC-CC----HHHCCCHHHHHHHHHHC
Q ss_conf 10268888--9988887521333215774367660245641565543104678998-57----12253889999999986
Q gi|254780872|r 141 IEHVDNIP--YFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGT-HQ----YDKFIKPTEMECFLAAN 213 (254)
Q Consensus 141 leHv~d~~--~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gt-H~----~~~Fi~p~el~~~l~~~ 213 (254)
|||++|++ .+|+.+.+.-+ ..+++..+-|+..+|...-.+. .++.. ++-+ || -.+..+|+||..++.+
T Consensus 140 LHHf~d~ql~~ll~~~~~~ar--~~vvinDL~Rs~lay~~~~l~~-~l~~~-~~~~r~DG~~Sv~raf~~~El~~l~~~- 214 (233)
T PRK06202 140 LHHLDDADVVRLLADMAALAR--RLVLHNDLIRSRLAYALAWAGT-RLLSR-SSFVHTDGLLSVRRSFTPAELAALAPQ- 214 (233)
T ss_pred HHCCCHHHHHHHHHHHHHHCC--EEEEECCCCCCHHHHHHHHHHH-HHHCC-CCEEECCCHHHHHHHCCHHHHHHHCCC-
T ss_conf 864982999999999998638--2699746532765899999998-88636-964420518899986699999987146-
Q ss_pred CCEEE
Q ss_conf 98388
Q gi|254780872|r 214 KVKII 218 (254)
Q Consensus 214 g~~~~ 218 (254)
|+++.
T Consensus 215 ~~~i~ 219 (233)
T PRK06202 215 GWRVE 219 (233)
T ss_pred CCEEE
T ss_conf 87771
No 31
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.74 E-value=1.7e-17 Score=129.15 Aligned_cols=135 Identities=25% Similarity=0.368 Sum_probs=103.8
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCHHHHEECCCHHCC
Q ss_conf 0162888569856999999731981699521356778888653101121-111221001232111530130012431026
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNIN-IDYRVSCAEEIAETDEKFDIILNMEVIEHV 144 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~-i~~~~~~~~~l~~~~~~FD~V~~~~vleHv 144 (254)
+..++||+|||.|..+..||.+|++|+|+|+|+.+|+.++..+...++. |+....++++... ++.||+|++..|+.|+
T Consensus 30 ~~g~~LDlgcG~Grna~~La~~G~~VtavD~s~~al~~~~~~a~~~~l~~v~~~~~Dl~~~~~-~~~yDlIlstvv~~fl 108 (198)
T PRK11207 30 KPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPMSIANLERIKAAENLDNLHTRVVDLNNLTF-DGEYDFILSTVVLMFL 108 (198)
T ss_pred CCCCEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC-CCCCCEEEEEEEEEEC
T ss_conf 997477724788786999986898599997999999999999987599824656203123887-7770589786452104
Q ss_pred C--CHHHHHHHHHHHCCCCCEE-EEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 8--8889988887521333215-77436766024564156554310467899857122538899999999869838885
Q gi|254780872|r 145 D--NIPYFIKTCCSLLLSNGLM-FISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDR 220 (254)
Q Consensus 145 ~--d~~~~l~~~~~~LkpgG~l-iist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~ 220 (254)
. ..+.++.++.+.++|||+. +++..... ++ |- +..+...++|.||....+ |++++..
T Consensus 109 ~p~~~p~iia~mq~~t~PGG~~LIV~~~dt~-----------d~-----p~-~~~fpf~f~~gEL~~yy~--~W~il~Y 168 (198)
T PRK11207 109 EAKTIPGLIANMQRCTKPGGYNLIVAAMDTA-----------DY-----PC-TVGFPFAFKEGELRRYYE--GWEMVKY 168 (198)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEEECCHH-----------HC-----CC-CCCCCCCCCHHHHHHHHC--CCEEEEE
T ss_conf 8667899999999960899489999974542-----------37-----89-989777668579998727--9979984
No 32
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1.9e-16 Score=122.68 Aligned_cols=128 Identities=23% Similarity=0.462 Sum_probs=98.2
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCC-EEEECCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCHHHHEECCCHH
Q ss_conf 0162888569856999999731981-699521356778888653101121--1112210012321115301300124310
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGAT-VTGIDPSTKNIAIAKNHANMKNIN--IDYRVSCAEEIAETDEKFDIILNMEVIE 142 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~-V~giD~S~~~i~~Ak~~a~~~~~~--i~~~~~~~~~l~~~~~~FD~V~~~~vle 142 (254)
+|++|||+|||+|.+|.+.+++|+. |+|+|+.+.+++.|+.++..++++ +..........+ ..+.||+|+|. .|
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~~~DvIVAN-IL- 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENGPFDVIVAN-IL- 238 (300)
T ss_pred CCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHC-CCCCCCEEEEH-HH-
T ss_conf 8987998267815999999981986689971888999999999997699602200345630001-36865689860-52-
Q ss_pred CCCCH-HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 26888-89988887521333215774367660245641565543104678998571225388999999998698388855
Q gi|254780872|r 143 HVDNI-PYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRV 221 (254)
Q Consensus 143 Hv~d~-~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~ 221 (254)
.+| ..+...++++|||||++++|-+ +- + ..+.+.+.++++||+++++.
T Consensus 239 --A~vl~~La~~~~~~lkpgg~lIlSGI--------------------l~------~---q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 239 --AEVLVELAPDIKRLLKPGGRLILSGI--------------------LE------D---QAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred --HHHHHHHHHHHHHHCCCCCEEEEEEE--------------------CH------H---HHHHHHHHHHHCCCEEEEEE
T ss_conf --78999999999987088936999862--------------------07------5---89999999985897686897
Q ss_pred EEEECCCCCEEE
Q ss_conf 057667777578
Q gi|254780872|r 222 GVVYNVFCNKWQ 233 (254)
Q Consensus 222 g~~~~p~~~~w~ 233 (254)
..+.|.
T Consensus 288 ------~~~eW~ 293 (300)
T COG2264 288 ------EREEWV 293 (300)
T ss_pred ------ECCCEE
T ss_conf ------008779
No 33
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.68 E-value=1.2e-16 Score=123.88 Aligned_cols=138 Identities=28% Similarity=0.444 Sum_probs=102.0
Q ss_pred CCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCHHHHEECCCHHCCC
Q ss_conf 62888569856999999731981699521356778888653101121111221001232--1115301300124310268
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA--ETDEKFDIILNMEVIEHVD 145 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~--~~~~~FD~V~~~~vleHv~ 145 (254)
.++||+|||||+..+.+..+....+|||+|++|+++|..+..-..+ .+.++..+. ..++.||+|++.+||.++-
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L----~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG 202 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTL----YVAEAVLFLEDLTQERFDLIVAADVLPYLG 202 (287)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHH----HHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
T ss_conf 0234426676766276788886512776269999998862415788----898999875522677643012456788640
Q ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCH-HHHHHHHHHCCCEEEEEEEEE
Q ss_conf 8889988887521333215774367660245641565543104678998571225388-999999998698388855057
Q gi|254780872|r 146 NIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKP-TEMECFLAANKVKIIDRVGVV 224 (254)
Q Consensus 146 d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p-~el~~~l~~~g~~~~~~~g~~ 224 (254)
+.+.++--+..+|+|||.+.||.-. ...+ + .+.+ .| +.+|-.+ .-+...++..||++++++...
T Consensus 203 ~Le~~~~~aa~~L~~gGlfaFSvE~--l~~~-----~-~f~l--~p-----s~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 203 ALEGLFAGAAGLLAPGGLFAFSVET--LPDD-----G-GFVL--GP-----SQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred CHHHHHHHHHHHCCCCCEEEEEECC--CCCC-----C-CEEC--CH-----HHHHCCCHHHHHHHHHHCCCEEEEEECCC
T ss_conf 0346899999855898648987231--6777-----8-7321--64-----65322522899999974596278742430
No 34
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.67 E-value=9.8e-16 Score=118.25 Aligned_cols=121 Identities=21% Similarity=0.367 Sum_probs=93.9
Q ss_pred HHHCCEEEECCCHHHHHHHHHHCCCC-EEEECCHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCHHHHEECCCH
Q ss_conf 00162888569856999999731981-69952135677888865310112111--1221001232111530130012431
Q gi|254780872|r 65 FKGLRILDLGCGGGLLSEPMAQMGAT-VTGIDPSTKNIAIAKNHANMKNINID--YRVSCAEEIAETDEKFDIILNMEVI 141 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s~~la~~g~~-V~giD~S~~~i~~Ak~~a~~~~~~i~--~~~~~~~~l~~~~~~FD~V~~~~vl 141 (254)
.+|++|||+|||+|+++.+.+++|+. |+|+|+.+.+++.|+.++..+++.-. +..++ ......+||+|++. .+
T Consensus 161 ~~~~~vLDvG~GSGILaIaA~klGa~~v~a~DiD~~Av~~a~eN~~lN~v~~~~~~~~~~---~~~~~~~~DlvvAN-Il 236 (298)
T PRK00517 161 LPGKTVLDVGCGSGILAIAAAKLGAKPVLAIDIDPQAVEAARENAELNGVDDRLELYLPE---DQPLEGKADVIVAN-IL 236 (298)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCC---CCCCCCCCCEEEEE-CC
T ss_conf 468868871577069999999749984999989899999999999986998426896166---43446764689973-15
Q ss_pred HCCCCH-HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 026888-8998888752133321577436766024564156554310467899857122538899999999869838885
Q gi|254780872|r 142 EHVDNI-PYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDR 220 (254)
Q Consensus 142 eHv~d~-~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~ 220 (254)
.++ ......+.+.|+|||.+++|-+ +. + .-+++.+.++++||++++.
T Consensus 237 ---a~vl~~l~~~~~~~l~~~G~lilSGI--------------------l~------~---~~~~v~~~~~~~g~~~~~~ 284 (298)
T PRK00517 237 ---ANPLIELAPDLAALVKPGGRLILSGI--------------------LA------E---QADEVLEAYEDAGFTLDEV 284 (298)
T ss_pred ---HHHHHHHHHHHHHHHCCCCEEEEECC--------------------CH------H---HHHHHHHHHHHCCCEEEEE
T ss_conf ---89999999999997389979999278--------------------48------8---9999999999879989788
Q ss_pred E
Q ss_conf 5
Q gi|254780872|r 221 V 221 (254)
Q Consensus 221 ~ 221 (254)
.
T Consensus 285 ~ 285 (298)
T PRK00517 285 A 285 (298)
T ss_pred E
T ss_conf 6
No 35
>pfam06325 PrmA Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.
Probab=99.66 E-value=1.5e-15 Score=117.07 Aligned_cols=121 Identities=21% Similarity=0.414 Sum_probs=91.3
Q ss_pred HHHCCEEEECCCHHHHHHHHHHCCC-CEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHC
Q ss_conf 0016288856985699999973198-169952135677888865310112111122100123211153013001243102
Q gi|254780872|r 65 FKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEH 143 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s~~la~~g~-~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleH 143 (254)
..|++|||+|||+|+++.+.+++|+ +|+|+|+.+.+++.|+.++..+++.-.+......+. ..++||+|++. .+
T Consensus 159 ~~~~~vlD~GcGSGILaIaA~klGa~~v~a~DiDp~Av~~a~eN~~~N~v~~~~~~~~~~~~--~~~~~DlIvAN-Il-- 233 (294)
T pfam06325 159 KPGETVLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEAQLEVYLPGDL--PEGKADVVVAN-IL-- 233 (294)
T ss_pred CCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCC--CCCCCCEEEEH-HC--
T ss_conf 36986785056508999999975999689998889999999999997699831799644315--56645789841-08--
Q ss_pred CCCH-HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 6888-89988887521333215774367660245641565543104678998571225388999999998698388855
Q gi|254780872|r 144 VDNI-PYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRV 221 (254)
Q Consensus 144 v~d~-~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~ 221 (254)
.++ ......+.+.|+|||.+++|-+ +. ++ -+++...++ .||++++..
T Consensus 234 -a~~L~~l~~~~~~~l~~~G~lilSGi--------------------l~------~q---~~~v~~a~~-~g~~~~~~~ 281 (294)
T pfam06325 234 -ADPLIELAPDIYALVKPGGYLILSGI--------------------LE------EQ---ADDVAEAYS-QGFELITVE 281 (294)
T ss_pred -HHHHHHHHHHHHHHHCCCCEEEECCC--------------------CH------HH---HHHHHHHHH-CCCEEEEEE
T ss_conf -99999999999997389989999178--------------------28------99---999999998-699774377
No 36
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.63 E-value=1.3e-14 Score=111.20 Aligned_cols=136 Identities=18% Similarity=0.370 Sum_probs=94.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHC-
Q ss_conf 7898899999999988746888871267751756599999998865187644458800162888569856999999731-
Q gi|254780872|r 9 TTKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQM- 87 (254)
Q Consensus 9 ~t~~~~ei~~F~~~a~~WwD~~g~~~~Lh~~N~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~- 87 (254)
.+-|.+|+ |.+.. .+- ..|-|.||.+ -|.+.+...... +..+|||+|||.|..+..++..
T Consensus 47 ~pgDs~~m--v~AR~-~fL-~~G~y~pl~~-------~i~~~~~~~~~~--------~~~~ilD~GCGEGyYl~~l~~~l 107 (272)
T PRK11088 47 DPGDNKEM--MQARR-AFL-DAGHYQPLRD-------AVANLLAERLDE--------KATAILDIGCGEGYYTHALADAL 107 (272)
T ss_pred CCCCCHHH--HHHHH-HHH-HCCCCHHHHH-------HHHHHHHHHCCC--------CCCEEEEECCCCCHHHHHHHHHH
T ss_conf 99976999--99999-999-7688479999-------999999975677--------78648881587778999999974
Q ss_pred ----CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCE
Q ss_conf ----9816995213567788886531011211112210012321115301300124310268888998888752133321
Q gi|254780872|r 88 ----GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGL 163 (254)
Q Consensus 88 ----g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~ 163 (254)
+..+.|+|+|+.+|..|- +...++.|.+++..++|+.++++|+|++... ..--+|+.|+|||||.
T Consensus 108 ~~~~~~~~~G~DiSK~ai~~Aa----k~~~~~~~~Va~~~~lP~~d~s~D~vl~vFs-------P~~~~Ef~RvLkp~G~ 176 (272)
T PRK11088 108 PEVTTCQLFGLDISKVAIKYAA----KRYPQVTFCVASSHRLPFADQSLDAIIRIYA-------PCKAEELARVVKPGGI 176 (272)
T ss_pred HCCCCCCEEEEECCHHHHHHHH----CCCCCCEEEEEECCCCCCCCCCCEEEEEEEC-------CCCHHHHHHEECCCCE
T ss_conf 1157873799811799999996----2688854999610018887665408999843-------7885886124637978
Q ss_pred EEEECCCCCCH
Q ss_conf 57743676602
Q gi|254780872|r 164 MFISTINRNLK 174 (254)
Q Consensus 164 liist~Nr~~~ 174 (254)
++.-+|+.+.+
T Consensus 177 li~V~P~~~HL 187 (272)
T PRK11088 177 VITVTPGPRHL 187 (272)
T ss_pred EEEEECCHHHH
T ss_conf 99997888899
No 37
>pfam03848 TehB Tellurite resistance protein TehB.
Probab=99.62 E-value=9e-16 Score=118.49 Aligned_cols=145 Identities=23% Similarity=0.354 Sum_probs=110.4
Q ss_pred HHHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCC
Q ss_conf 00162888569856999999731981699521356778888653101121111221001232111530130012431026
Q gi|254780872|r 65 FKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHV 144 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv 144 (254)
+++.++||+|||.|+-|..||+.|++|+++|.|+.+|+.++..+++.+++|+..+.|+++... .+.||+|++.-|+..+
T Consensus 29 i~pgk~LDlgcG~GRNslyLa~~G~~VtavD~n~~aL~~l~~ia~~e~l~i~~~~~Din~~~~-~e~YD~IisTVvfmFL 107 (192)
T pfam03848 29 VKPGKALDLGCGQGRNSLFLSLLGYDVTAVDHNENSIANLQDIKEKENLDIPTALYDINSASI-DENYDFILSTVVLMFL 107 (192)
T ss_pred CCCCCEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC-CCCCCEEEEEEEEEEC
T ss_conf 799746660478973189998689917999799999999999999709975268731555687-6776879888877731
Q ss_pred C--CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEEE
Q ss_conf 8--88899888875213332157743676602456415655431046789985712253889999999986983888550
Q gi|254780872|r 145 D--NIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVG 222 (254)
Q Consensus 145 ~--d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~g 222 (254)
. -...++.++.+.++|||+.+|.+.-.+. ++-.. +| ....+.|.||...-+ |++++.
T Consensus 108 ~~~~ip~iI~~mq~~T~pGGynlIv~am~t~----------d~pc~-~~-----f~ftfk~gEL~~yy~--~Weilk--- 166 (192)
T pfam03848 108 QAERIPAIIANMQEHTNVGGYNLIVAAMSTA----------DYPCT-VP-----FSFTFKEGELKRYYQ--DWELLK--- 166 (192)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEEEECCC----------CCCCC-CC-----CCCCCCHHHHHHHHC--CCEEEE---
T ss_conf 8678779999999852899889999761455----------37899-89-----887788018999738--987998---
Q ss_pred EEECCCCCEEE
Q ss_conf 57667777578
Q gi|254780872|r 223 VVYNVFCNKWQ 233 (254)
Q Consensus 223 ~~~~p~~~~w~ 233 (254)
||--.+.+.
T Consensus 167 --YnE~~g~lH 175 (192)
T pfam03848 167 --YNENVGELH 175 (192)
T ss_pred --ECCCCCHHH
T ss_conf --537765765
No 38
>KOG4300 consensus
Probab=99.61 E-value=1.1e-15 Score=117.90 Aligned_cols=159 Identities=20% Similarity=0.257 Sum_probs=110.2
Q ss_pred CCEEEECCCHHHHHHHHH-HCCCCEEEECCHHHHHHHHHHHHHCC-CCCCC-CCCCCCCCCC-CCCCCHHHHEECCCHHC
Q ss_conf 628885698569999997-31981699521356778888653101-12111-1221001232-11153013001243102
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMA-QMGATVTGIDPSTKNIAIAKNHANMK-NINID-YRVSCAEEIA-ETDEKFDIILNMEVIEH 143 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la-~~g~~V~giD~S~~~i~~Ak~~a~~~-~~~i~-~~~~~~~~l~-~~~~~FD~V~~~~vleH 143 (254)
..|||||||||.--..+. ..+.+||++|++++|-++|...+.++ ..++. |.+++.|+++ ..++++|+|+|.-||--
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS 157 (252)
T KOG4300 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS 157 (252)
T ss_pred CCEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECHHCCCCCCCCCEEEEEEEEEEEC
T ss_conf 13699614688885355578885689867848799999988864257205777850521074213677115777888720
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH--HHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 688889988887521333215774367660245641565--543104678998571225388999999998698388855
Q gi|254780872|r 144 VDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIG--AEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRV 221 (254)
Q Consensus 144 v~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~--ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~ 221 (254)
+.||.+.|+++.|+|+|||.+++----+-..+++..|+- +|..-+++--|.| |. .++-+.|+++.|+..+.+
T Consensus 158 ve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~-lt-----rd~~e~Leda~f~~~~~k 231 (252)
T KOG4300 158 VEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCV-LT-----RDTGELLEDAEFSIDSCK 231 (252)
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCHHHHEECCCEE-EE-----HHHHHHHHHCCCCCCHHH
T ss_conf 577999999988750889589997212442108999999874556650234458-76-----457777553304411110
Q ss_pred EEEECCCCCEEEEC
Q ss_conf 05766777757864
Q gi|254780872|r 222 GVVYNVFCNKWQLS 235 (254)
Q Consensus 222 g~~~~p~~~~w~~~ 235 (254)
.. ++ .-.|...
T Consensus 232 r~--~~-~ttw~~V 242 (252)
T KOG4300 232 RF--NF-GTTWVIV 242 (252)
T ss_pred CC--CC-CCEEEEE
T ss_conf 02--68-8348997
No 39
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=99.61 E-value=1.5e-15 Score=117.11 Aligned_cols=124 Identities=22% Similarity=0.376 Sum_probs=96.1
Q ss_pred HHH--CCEEEECCCHHHHHHHHHHCCC-CEEEECCHHHHHHHHHHHHHCCCCCCC---CCC-CCCCCCCCCCCCHHHHEE
Q ss_conf 001--6288856985699999973198-169952135677888865310112111---122-100123211153013001
Q gi|254780872|r 65 FKG--LRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNINID---YRV-SCAEEIAETDEKFDIILN 137 (254)
Q Consensus 65 l~g--~~VLDiGCG~G~~s~~la~~g~-~V~giD~S~~~i~~Ak~~a~~~~~~i~---~~~-~~~~~l~~~~~~FD~V~~ 137 (254)
+++ ++|+|+|||+|+|+.+++++|+ +|.|+|+.+.+++-||.++..+++.-. +.. +..+.......++|+|+|
T Consensus 193 ~k~kh~~viD~GCGSGIL~IAa~~LGa~~~~g~D~DP~Ave~~r~N~~lN~v~~~~~~~~~~~vPe~~~~~e~~~DViVA 272 (330)
T TIGR00406 193 LKDKHKKVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLENSVPELEQPIEGKADVIVA 272 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEE
T ss_conf 77766547871267178999999751231122137728999999768745886457643205787534532256675788
Q ss_pred CCCHHCCCCH-HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCE
Q ss_conf 2431026888-899888875213332157743676602456415655431046789985712253889999999986983
Q gi|254780872|r 138 MEVIEHVDNI-PYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVK 216 (254)
Q Consensus 138 ~~vleHv~d~-~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~ 216 (254)
. . +.++ ..+...+.+++||+|.+++|=| +- + ....+.+.++++||+
T Consensus 273 N-i---LA~vi~~L~p~~~~L~~~~G~lilSGI--------------------l~--~-------~~~sV~~ay~q~GF~ 319 (330)
T TIGR00406 273 N-I---LAEVIKELYPQFSRLVKPGGHLILSGI--------------------LE--T-------QAQSVCEAYEQAGFT 319 (330)
T ss_pred C-C---HHHHHHHHHHHHHHHCCCCCCEEEHHH--------------------HH--H-------HHHHHHHHHHCCCCE
T ss_conf 0-0---245787641355131068996574134--------------------76--4-------799999998557946
Q ss_pred EEEEE
Q ss_conf 88855
Q gi|254780872|r 217 IIDRV 221 (254)
Q Consensus 217 ~~~~~ 221 (254)
+..+.
T Consensus 320 ~~~~~ 324 (330)
T TIGR00406 320 VVEIL 324 (330)
T ss_pred EHHHH
T ss_conf 34346
No 40
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=99.59 E-value=6.1e-15 Score=113.32 Aligned_cols=103 Identities=26% Similarity=0.392 Sum_probs=82.4
Q ss_pred HHCCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCHHHHEECCCHH
Q ss_conf 01628885698569999997319--81699521356778888653101121-1112210012321115301300124310
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNIN-IDYRVSCAEEIAETDEKFDIILNMEVIE 142 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~~~-i~~~~~~~~~l~~~~~~FD~V~~~~vle 142 (254)
.+.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.|+.+++.+++. +++..++..+- ..+++||+|+|.=-+
T Consensus 31 ~~g~vLDlGcG~G~i~~~la~~~p~~~v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~~-~~~~~fD~IvsNPP~- 108 (170)
T pfam05175 31 LGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLYSA-VEPGKFDLIISNPPF- 108 (170)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCCEEEEEECCCC-
T ss_conf 899499977648298999999789867985154499999999999980998489997446665-778866089989772-
Q ss_pred CC---CC---HHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 26---88---8899888875213332157743676
Q gi|254780872|r 143 HV---DN---IPYFIKTCCSLLLSNGLMFISTINR 171 (254)
Q Consensus 143 Hv---~d---~~~~l~~~~~~LkpgG~liist~Nr 171 (254)
|. .+ ...+++++.++|+|||.+.+-+ ||
T Consensus 109 h~g~~~~~~~~~~~i~~A~~~L~pgG~l~~V~-n~ 142 (170)
T pfam05175 109 HAGKATDYDVAQRFIAGAARHLKPGGELWIVA-NR 142 (170)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE-EC
T ss_conf 11420328999999999999616497999999-89
No 41
>pfam03291 Pox_MCEL mRNA capping enzyme. This family of enzymes are related to pfam03919.
Probab=99.59 E-value=1.7e-14 Score=110.60 Aligned_cols=209 Identities=16% Similarity=0.225 Sum_probs=119.9
Q ss_pred CCCCHHHHHHHHHHHHHH--CCC--CCCCHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCH-HHHHHH
Q ss_conf 789889999999998874--688--887126775175659999999886518764445880016288856985-699999
Q gi|254780872|r 9 TTKNQDAINQFSNIASEW--WEP--TGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGG-GLLSEP 83 (254)
Q Consensus 9 ~t~~~~ei~~F~~~a~~W--wD~--~g~~~~Lh~~N~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~-G~~s~~ 83 (254)
.-++.-=.+|+++.-..= |.. .++-..|..+| .||...++..+....... -.+.+|||+|||- |-+...
T Consensus 8 ~~~~~~V~~HYN~~~~~~~~~~~R~~S~I~~LR~FN----NwVKs~LI~~~~~~~~~~--~~~~~VLDl~CGkGGDL~Kw 81 (327)
T pfam03291 8 SNIVDIVAAHYNELPESGIDLKKRQDSTIDQLRNFN----NWIKSLLISLYASKTFQD--KPKRKVLDLDCGKGGDLEKY 81 (327)
T ss_pred CCHHHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHHH----HHHHHHHHHHHHHHHHCC--CCCCEEEEECCCCCCCHHHH
T ss_conf 885369998733110126122334138517788731----899999999998875146--88987998368664457889
Q ss_pred HHHCCCCEEEECCHHHHHHHHHHHHHCCCC-----------CCCCCCCCC-----C-CCCCCCCCHHHHEECCCHHCC-C
Q ss_conf 973198169952135677888865310112-----------111122100-----1-232111530130012431026-8
Q gi|254780872|r 84 MAQMGATVTGIDPSTKNIAIAKNHANMKNI-----------NIDYRVSCA-----E-EIAETDEKFDIILNMEVIEHV-D 145 (254)
Q Consensus 84 la~~g~~V~giD~S~~~i~~Ak~~a~~~~~-----------~i~~~~~~~-----~-~l~~~~~~FD~V~~~~vleHv-~ 145 (254)
....-..++|+|+|+..|+.|+.+...... ...+..++. . .+......||+|.|.-.||+. .
T Consensus 82 ~~~~i~~~vgiDis~~sI~~A~~RY~~~~~~~~~~~~~~~f~~~f~~~D~~~~~l~~~~~~~~~~FDvVS~QFAiHY~Fe 161 (327)
T pfam03291 82 FKGGISGLIGTDIAEVSIEQAQERYNDLNSRSKSKYYKFDFIAEFITGDCFVSSVREVFEPGQRKFDIVSWQFAIHYSFE 161 (327)
T ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCCEEEHHHHHHHHHC
T ss_conf 74798689996689999999999999864211444456675001231562156787753577885037751787898764
Q ss_pred CH---HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH-------HHHHH-HHCCC-----CC-CCC-----------CCH
Q ss_conf 88---89988887521333215774367660245641-------56554-31046-----78-998-----------571
Q gi|254780872|r 146 NI---PYFIKTCCSLLLSNGLMFISTINRNLKAMLLA-------IIGAE-YLLQW-----LP-KGT-----------HQY 197 (254)
Q Consensus 146 d~---~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~-------i~~ae-~il~~-----~P-~gt-----------H~~ 197 (254)
+. ..+|+++.+.|+|||+++.+|||-+.+...+. .+|-+ |-... .| -|. ...
T Consensus 162 se~~a~~~l~Nvs~~Lk~GG~FIGT~~d~~~i~~~l~~~~~~~~~~gN~~y~i~f~~~~~~~~fG~~y~f~l~~~v~~~~ 241 (327)
T pfam03291 162 SEEKARTMLRNLAELLASGGKFIGTTPDGDFIIKKLTATFVEHKSFGNSIYYVSFEKDPPRPPFGIKYVYNLEDMVTDVP 241 (327)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCC
T ss_conf 89999999999998605898899996678999999986034532058603899946889999998679999721178887
Q ss_pred HHCCCHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 22538899999999869838885505
Q gi|254780872|r 198 DKFIKPTEMECFLAANKVKIIDRVGV 223 (254)
Q Consensus 198 ~~Fi~p~el~~~l~~~g~~~~~~~g~ 223 (254)
++.+....+.+++++.||+.+....+
T Consensus 242 EYlV~~~~~~~l~~eygleLv~~~~F 267 (327)
T pfam03291 242 EYLVPFETLVELAEEYGLELVDKKTF 267 (327)
T ss_pred EEECCHHHHHHHHHHCCCEEEEECCH
T ss_conf 31367999999999859899994687
No 42
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=99.58 E-value=1e-14 Score=111.98 Aligned_cols=140 Identities=22% Similarity=0.372 Sum_probs=105.2
Q ss_pred HHCCEEEECCCHHHHHHHHHHC----C-----CCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC-C-CCCCCCHHH
Q ss_conf 0162888569856999999731----9-----816995213567788886531011211112210012-3-211153013
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM----G-----ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE-I-AETDEKFDI 134 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~----g-----~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~-l-~~~~~~FD~ 134 (254)
.|.+|||+|||.|.|...|.+. | +...||++|.+.|-.| -..|++| +++|+++ | .+.+++||+
T Consensus 13 ~GSRVLDLGCGdG~LL~~L~d~k~v~GPPttehRL~G~Eid~~~v~Ac----~~RGv~V--Iq~Dld~GL~~F~D~~FD~ 86 (205)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGPPTTEHRLYGIEIDQDGVLAC----VARGVSV--IQGDLDEGLEAFPDKSFDY 86 (205)
T ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHH----HHCCCCE--ECCCCCCCCCCCCCCCCCE
T ss_conf 887364101688789999997437898887120001023454459999----8625201--3006003401167887662
Q ss_pred HEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCC----CCCHHHHHHHHHHHHHCCCCCCCC----CCH-H----HCC
Q ss_conf 001243102688889988887521333215774367----660245641565543104678998----571-2----253
Q gi|254780872|r 135 ILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTIN----RNLKAMLLAIIGAEYLLQWLPKGT----HQY-D----KFI 201 (254)
Q Consensus 135 V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist~N----r~~~s~~~~i~~ae~il~~~P~gt----H~~-~----~Fi 201 (254)
|+.+..|+-+.+|..+|+|+.|+ |=.-|+|.|| |.-.|++.. |=+||=| .+| + .|.
T Consensus 87 ViLsQTLQa~~Np~~iL~EmLRv---g~~aIVSFPNFGyW~~R~~i~~~--------GRMPkVt~~lPY~WynTPNiHfc 155 (205)
T TIGR02081 87 VILSQTLQATRNPEEILDEMLRV---GRRAIVSFPNFGYWRVRWSILTG--------GRMPKVTDELPYEWYNTPNIHFC 155 (205)
T ss_pred EEECHHHHHHHCHHHHHHHHHHH---CCEEEEECCCCCCHHCHHHEECC--------CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 54213566422568999887767---38515605887711010311107--------85887887878888888875323
Q ss_pred CHHHHHHHHHHCCCEEEEEEE
Q ss_conf 889999999986983888550
Q gi|254780872|r 202 KPTEMECFLAANKVKIIDRVG 222 (254)
Q Consensus 202 ~p~el~~~l~~~g~~~~~~~g 222 (254)
|=++...++++.|++|.+-.-
T Consensus 156 T~~DF~~L~~~~~~~i~~r~~ 176 (205)
T TIGR02081 156 TLADFEELCEELNLRILDRAA 176 (205)
T ss_pred CHHHHHHHHHHCCCEEHHHHH
T ss_conf 377899999871965137788
No 43
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=99.58 E-value=2.5e-14 Score=109.56 Aligned_cols=169 Identities=22% Similarity=0.359 Sum_probs=112.9
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHH-------------CHH----H--HHHHHHHHHHHCCCCCCCCCCHHHCC
Q ss_conf 7898899999999988746888871267751-------------756----5--99999998865187644458800162
Q gi|254780872|r 9 TTKNQDAINQFSNIASEWWEPTGKFKPLHQI-------------NPV----R--IKYIQDKIMQHFQCKSDDTHPFKGLR 69 (254)
Q Consensus 9 ~t~~~~ei~~F~~~a~~WwD~~g~~~~Lh~~-------------N~~----R--~~~I~~~i~~~~~~~~~~~~~l~g~~ 69 (254)
..++.++.+.|.++-++-- .| .||..+ |+- | .+.+.+.+..... -++.+
T Consensus 23 ~~l~~~~~~~~~~~~~rr~--~g--~PlqYI~g~~~F~~~~f~V~~~VLIPRpETE~Lve~~l~~~~--------~~~~~ 90 (251)
T TIGR03534 23 KELTPEELARFEALVARRA--KG--EPVAYILGEREFYGLDFKVSPGVLIPRPDTEELVEAALERLK--------KGPLK 90 (251)
T ss_pred CCCCHHHHHHHHHHHHHHH--CC--CCHHHHHCEEEEEEEEEEEECCEEEECCCHHHHHHHHHHHHC--------CCCCE
T ss_conf 8899999999999999998--69--968995087689868999718878648833999999999731--------48986
Q ss_pred EEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCHHHHEEC--------
Q ss_conf 888569856999999731--98169952135677888865310112-1111221001232111530130012--------
Q gi|254780872|r 70 ILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAETDEKFDIILNM-------- 138 (254)
Q Consensus 70 VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~~~~~FD~V~~~-------- 138 (254)
|||+|||+|.++..+++. +++|+|+|+|+.++++|+.+++..++ ++++.+++..+- ..+++||+|+|.
T Consensus 91 ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~~~~-~~~~~fDlIvsNPPYI~~~e 169 (251)
T TIGR03534 91 VLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAKRLGLENVRFLKSDWFEP-LPGGKFDLIVSNPPYIPEAD 169 (251)
T ss_pred EEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHC-CCCCCCCEEEECCCCCCHHH
T ss_conf 99955671699999999679978999989879999999999980998268651314321-56898668997899887456
Q ss_pred ------CCHHCCC------------CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHC
Q ss_conf ------4310268------------8889988887521333215774367660245641565543104678998571225
Q gi|254780872|r 139 ------EVIEHVD------------NIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKF 200 (254)
Q Consensus 139 ------~vleHv~------------d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~F 200 (254)
+|..|=| ....+++.+.++|+|||.+++.. + +.
T Consensus 170 ~~~l~~eV~~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~Ei-g--------------------------~~-- 220 (251)
T TIGR03534 170 IHLLDPEVRFHEPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLLEI-G--------------------------YD-- 220 (251)
T ss_pred HHHCCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE-C--------------------------HH--
T ss_conf 663286010267299971798469999999999998536798899996-8--------------------------37--
Q ss_pred CCHHHHHHHHHHCCCEEEEE
Q ss_conf 38899999999869838885
Q gi|254780872|r 201 IKPTEMECFLAANKVKIIDR 220 (254)
Q Consensus 201 i~p~el~~~l~~~g~~~~~~ 220 (254)
..+++.++++++||..+++
T Consensus 221 -q~~~v~~l~~~~gf~~i~~ 239 (251)
T TIGR03534 221 -QGEAVRALFEAAGFADVET 239 (251)
T ss_pred -HHHHHHHHHHHCCCCEEEE
T ss_conf -8999999999689970688
No 44
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase; InterPro: IPR014122 MenG is a generic term for a methyltransferase that catalyses the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species..
Probab=99.58 E-value=1.1e-14 Score=111.83 Aligned_cols=153 Identities=22% Similarity=0.366 Sum_probs=116.6
Q ss_pred HHHCCEEEECCCHHHHHHHHHHC-C--CCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCHHHHEECCC
Q ss_conf 00162888569856999999731-9--8169952135677888865310112-111122100123211153013001243
Q gi|254780872|r 65 FKGLRILDLGCGGGLLSEPMAQM-G--ATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAETDEKFDIILNMEV 140 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s~~la~~-g--~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~~~~~FD~V~~~~v 140 (254)
-+|.++||+.|||+-.+..|++. | ..|.|+|.|++|+.+++++.+.... ++...++.+-++|+.+++||.|+.---
T Consensus 44 ~~G~~~ldvCCGt~dW~~~l~~~~G~~G~v~Gldfs~nml~~~~~k~~~~~~~~~~l~hGnam~lP~~~~~fdyvtiGfG 123 (231)
T TIGR02752 44 QKGKKALDVCCGTADWAIALAEAVGKEGEVKGLDFSENMLSVGKQKVKDAKLSNVELVHGNAMELPYDDNSFDYVTIGFG 123 (231)
T ss_pred HHCCHHHHHCCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHEEEECCCHHCCCCCCCCCCEEEECCC
T ss_conf 40412112103733788898886177771674003588999999888754320022230520017877666125775255
Q ss_pred HHCCCCHHHHHHHHHHHCCCCCEEEE-ECCCCCCHHH-------H---HHHHH---H----HHHCCCCCCCCCCHHHCCC
Q ss_conf 10268888998888752133321577-4367660245-------6---41565---5----4310467899857122538
Q gi|254780872|r 141 IEHVDNIPYFIKTCCSLLLSNGLMFI-STINRNLKAM-------L---LAIIG---A----EYLLQWLPKGTHQYDKFIK 202 (254)
Q Consensus 141 leHv~d~~~~l~~~~~~LkpgG~lii-st~Nr~~~s~-------~---~~i~~---a----e~il~~~P~gtH~~~~Fi~ 202 (254)
|..|||.-.+|+++.|++||||.++. .|-.-++..| + +.++| | || .|+...| ..|--
T Consensus 124 lrnvPdy~~vl~em~rv~kPGG~~~C~~tsqP~~~~~~q~y~~yf~~~mP~~Gk~~ak~y~ey--sWlqes~---~~fPG 198 (231)
T TIGR02752 124 LRNVPDYMTVLKEMARVVKPGGKVVCLETSQPTLPGFKQLYFFYFKYIMPLFGKLFAKSYKEY--SWLQESA---REFPG 198 (231)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH---HHCCC
T ss_conf 123026999999988862799717986257762579999999999999887778886433455--7777776---51786
Q ss_pred HHHHHHHHHHCCCEEEEEEE
Q ss_conf 89999999986983888550
Q gi|254780872|r 203 PTEMECFLAANKVKIIDRVG 222 (254)
Q Consensus 203 p~el~~~l~~~g~~~~~~~g 222 (254)
.++|.++++++||..+.+..
T Consensus 199 ~~~l~~~f~~~G~~~v~~~~ 218 (231)
T TIGR02752 199 KDELAEMFKEAGLKDVEVKS 218 (231)
T ss_pred HHHHHHHHHHCCHHHEEEEE
T ss_conf 78999999852701122310
No 45
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.56 E-value=1.2e-13 Score=105.28 Aligned_cols=153 Identities=22% Similarity=0.281 Sum_probs=113.5
Q ss_pred CCHHHCCEEEECCCHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCC-CCCCCCHHHHE
Q ss_conf 8800162888569856999999731---98169952135677888865310112--111122100123-21115301300
Q gi|254780872|r 63 HPFKGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNI--NIDYRVSCAEEI-AETDEKFDIIL 136 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~~s~~la~~---g~~V~giD~S~~~i~~Ak~~a~~~~~--~i~~~~~~~~~l-~~~~~~FD~V~ 136 (254)
.+.+|..|+|||||+|..+..+|+. +.+|++||..+++++.++.++++.++ +++...+++.+. ...+..||.|+
T Consensus 37 ~l~~~~~vwDIGaGsGsvsiEaa~~~~~~~~V~aIE~~~e~~~~~~~N~~kfg~~~nv~~i~G~ap~~l~~l~p~pD~vF 116 (198)
T PRK00377 37 RLFKGGKLVDVGCGTGSVSVEAALIVGEGGKVYAIDKDELAVELTKKNAEKFGVGDNVVLIEGEAPEVLPKLNPKSDRYF 116 (198)
T ss_pred CCCCCCEEEEECCCEEHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCCCCCEEE
T ss_conf 99998999991770329999999966978759999678889999999999809998859995254887720899889899
Q ss_pred ECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCE
Q ss_conf 12431026888899888875213332157743676602456415655431046789985712253889999999986983
Q gi|254780872|r 137 NMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVK 216 (254)
Q Consensus 137 ~~~vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~ 216 (254)
.-+- -.+...+|+.+.+.|+|||+++++.+- + | +-.+..+++++.|++
T Consensus 117 IGG~---~g~l~~il~~~~~~L~~gGriVinaVt--l----------e-----------------t~~~~~~~l~~~~~~ 164 (198)
T PRK00377 117 IGGG---GEELPEIIQAALEKIGKGGRIVADAIL--L----------E-----------------SLNKALSALEELGYK 164 (198)
T ss_pred EECC---CCCHHHHHHHHHHHCCCCCEEEEEEEC--H----------H-----------------HHHHHHHHHHHCCCC
T ss_conf 9788---777899999999857999899998362--9----------8-----------------899999999976998
Q ss_pred EEEEEEEEE---CCCCCEEEECCCCCCEEEEEEEECC
Q ss_conf 888550576---6777757864788645179999758
Q gi|254780872|r 217 IIDRVGVVY---NVFCNKWQLSAKNMDVNYMVLGHLP 250 (254)
Q Consensus 217 ~~~~~g~~~---~p~~~~w~~~~~~~~vnY~~~~~kp 250 (254)
.++.-+.. .|+.+.+.+.+.|.. |+++++||
T Consensus 165 -~ev~qv~vsr~~~lg~~~~~~~~NPV--~ii~~~KP 198 (198)
T PRK00377 165 -YEVTEVIIAKGMKTGKGTAMIARNPI--FIITGEKP 198 (198)
T ss_pred -CEEEEEEEEECCCCCCCCEEECCCCE--EEEEEECC
T ss_conf -14999994647325787666068997--99999788
No 46
>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=99.53 E-value=4.6e-15 Score=114.08 Aligned_cols=120 Identities=26% Similarity=0.390 Sum_probs=96.5
Q ss_pred CCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCC-
Q ss_conf 6288856985699999973198169952135677888865310112111122100123211153013001243102688-
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVDN- 146 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d- 146 (254)
.++||+||+.|.|++.||.+....+++|+|+.+|+.|+++.. .-.+|.+.+.++.+. .+.++||+|++++|+.++.|
T Consensus 45 ~~alE~GCa~G~lT~~LA~RCdrLla~Dvs~~Av~~Ar~Rla-~~~hV~v~~~~vp~~-wP~~~FDLIV~SEVlYYL~d~ 122 (201)
T pfam05401 45 ANALEVGCAAGAFTERLAPYCQRLTVIDVMPEAIARARLRMK-KWSHISWIVSDVQQF-STNELFDLIVVAEVLYYLGDV 122 (201)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC-CCCCCEEEECCCCCC-CCCCCEEEEEEEHHHHHHCCH
T ss_conf 002043566248789999987467321362999999999855-799828982566665-998886279751477861879
Q ss_pred --HHHHHHHHHHHCCCCCEEEEECC-CCCCHHHHHHHHHHHHHCCCC
Q ss_conf --88998888752133321577436-766024564156554310467
Q gi|254780872|r 147 --IPYFIKTCCSLLLSNGLMFISTI-NRNLKAMLLAIIGAEYLLQWL 190 (254)
Q Consensus 147 --~~~~l~~~~~~LkpgG~liist~-Nr~~~s~~~~i~~ae~il~~~ 190 (254)
....++++.+.|.|||.|++... |-+...| ..+.|||-++.++
T Consensus 123 a~lr~~~~~~v~~LaP~G~Lvfgsarda~crrw-gh~~gaetv~~~~ 168 (201)
T pfam05401 123 AEMRGAVRNLVSMLAPDGQLVFGSARDANCRRW-GHVAGAETVIALL 168 (201)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH-CCHHHHHHHHHHH
T ss_conf 999999999999718996599730451066551-0111189999999
No 47
>KOG2361 consensus
Probab=99.52 E-value=3.9e-14 Score=108.33 Aligned_cols=200 Identities=18% Similarity=0.291 Sum_probs=125.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCH-----HHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHH
Q ss_conf 776789889999999998874688887126775175-----659999999886518764445880016288856985699
Q gi|254780872|r 6 PNYTTKNQDAINQFSNIASEWWEPTGKFKPLHQINP-----VRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLL 80 (254)
Q Consensus 6 ~~~~t~~~~ei~~F~~~a~~WwD~~g~~~~Lh~~N~-----~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~ 80 (254)
...+.+...+..++..-|+..||. | +..|. -|. |+.+..-..+...... .+ +|||||||.|-.
T Consensus 18 ~~~~~~~~~~~~~y~~~~~k~wD~---f---y~~~~~rFfkdR~-wL~~Efpel~~~~~~~----~~-~ilEvGCGvGNt 85 (264)
T KOG2361 18 QSASRVLEEEVVKYEREASKYWDT---F---YKIHENRFFKDRN-WLLREFPELLPVDEKS----AE-TILEVGCGVGNT 85 (264)
T ss_pred CCCCCCCHHHHHHHHCCHHHHHHH---H---HHHCCCCCCCHHH-HHHHHHHHHHCCCCCC----HH-HHEEECCCCCCC
T ss_conf 243135256666663364666456---6---6532454531167-7877567750755557----34-511222477751
Q ss_pred HHHHHHC----CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCC--CCCC--CCCCCCHHHHEECCCHHCCC--CHHHH
Q ss_conf 9999731----9816995213567788886531011211112210--0123--21115301300124310268--88899
Q gi|254780872|r 81 SEPMAQM----GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSC--AEEI--AETDEKFDIILNMEVIEHVD--NIPYF 150 (254)
Q Consensus 81 s~~la~~----g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~--~~~l--~~~~~~FD~V~~~~vleHv~--d~~~~ 150 (254)
..++-+- +..|.++|.|+.+|+..+.+.......+.-.+.+ .+++ +...+++|+|++.-||--++ ....+
T Consensus 86 vfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a 165 (264)
T KOG2361 86 VFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSV 165 (264)
T ss_pred CCHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCHHHHCCCCEECCCHHCCCCCCCCCCCEEEEEEEEECCCHHHHHHH
T ss_conf 22444248998738997489868999987363326455012000165601037888676334789998751484778999
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC---CC-CCCCCCHHHCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 88887521333215774367660245641565543104---67-8998571225388999999998698388855
Q gi|254780872|r 151 IKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQ---WL-PKGTHQYDKFIKPTEMECFLAANKVKIIDRV 221 (254)
Q Consensus 151 l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~---~~-P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~ 221 (254)
+++++++|||||.|++-.-.+.-.+-+ -+..+..+. ++ --||- .+|.+.++|..++.++||+.++..
T Consensus 166 ~~nl~~llKPGG~llfrDYg~~Dlaql--RF~~~~~i~~nfYVRgDGT~--~YfF~~eeL~~~f~~agf~~~~~~ 236 (264)
T KOG2361 166 IKNLRTLLKPGGSLLFRDYGRYDLAQL--RFKKGQCISENFYVRGDGTR--AYFFTEEELDELFTKAGFEEVQLE 236 (264)
T ss_pred HHHHHHHHCCCCEEEEEECCCCHHHHH--HCCCCCEEECCEEECCCCCE--EEECCHHHHHHHHHHCCCCHHCCC
T ss_conf 999999748886799841454347887--51577432014588169966--522368899999875153210044
No 48
>KOG1271 consensus
Probab=99.52 E-value=5.5e-14 Score=107.41 Aligned_cols=141 Identities=23% Similarity=0.377 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCCC--EEEECCHHHHHHHHHHHHHCCCCC--CCCCC
Q ss_conf 99999998865187644458800162888569856999999731981--699521356778888653101121--11122
Q gi|254780872|r 44 IKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGAT--VTGIDPSTKNIAIAKNHANMKNIN--IDYRV 119 (254)
Q Consensus 44 ~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~~--V~giD~S~~~i~~Ak~~a~~~~~~--i~~~~ 119 (254)
++|+.+.+. .++.... -.+|||+|||.|.+...|++.|++ .+|||.|+.+++.|+..|+..+.. |+|.+
T Consensus 52 v~wl~d~~~-~~rv~~~------A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q 124 (227)
T KOG1271 52 VDWLKDLIV-ISRVSKQ------ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQ 124 (227)
T ss_pred HHHHHHHHH-HHHHCCC------CCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 999986544-4110224------321166157961889998871388886453157889999987887527885316887
Q ss_pred CCCCCCCCCCCCHHHHEECCCHHC--------CCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 100123211153013001243102--------688889988887521333215774367660245641565543104678
Q gi|254780872|r 120 SCAEEIAETDEKFDIILNMEVIEH--------VDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLP 191 (254)
Q Consensus 120 ~~~~~l~~~~~~FD~V~~~~vleH--------v~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P 191 (254)
.++.+-.+..++||+|.--+.+.- ...+...+..+.++|+|||+++|+.-|-
T Consensus 125 ~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~-------------------- 184 (227)
T KOG1271 125 LDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF-------------------- 184 (227)
T ss_pred EECCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCEEEEHHHHHHCCCCCCEEEEEECCC--------------------
T ss_conf 322577555543238960574122550777766543443556863038896799985576--------------------
Q ss_pred CCCCCHHHCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 998571225388999999998698388855
Q gi|254780872|r 192 KGTHQYDKFIKPTEMECFLAANKVKIIDRV 221 (254)
Q Consensus 192 ~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~ 221 (254)
|.+||...++..||+.....
T Consensus 185 ----------T~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271 185 ----------TKDELVEEFENFNFEYLSTV 204 (227)
T ss_pred ----------CHHHHHHHHHCCCEEEEEEE
T ss_conf ----------58999999725974999960
No 49
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.50 E-value=1.7e-13 Score=104.34 Aligned_cols=170 Identities=18% Similarity=0.329 Sum_probs=110.3
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHH-------------CHH----H--HHHHHHHHHHHCCCCCCCCCCHHHCC
Q ss_conf 7898899999999988746888871267751-------------756----5--99999998865187644458800162
Q gi|254780872|r 9 TTKNQDAINQFSNIASEWWEPTGKFKPLHQI-------------NPV----R--IKYIQDKIMQHFQCKSDDTHPFKGLR 69 (254)
Q Consensus 9 ~t~~~~ei~~F~~~a~~WwD~~g~~~~Lh~~-------------N~~----R--~~~I~~~i~~~~~~~~~~~~~l~g~~ 69 (254)
..++.++.++|..+-++=- .| .|+..+ ||- | -+.+.+.+..... -+..+
T Consensus 45 ~~l~~~~~~~~~~li~RR~--~g--ePlqYI~G~~~F~g~~f~V~~~VLIPRPETE~LVe~~l~~~~--------~~~~~ 112 (277)
T PRK09328 45 TQLTDEQQQQLEALLTRRR--QG--EPIAYLTGEREFWSLPLFVSPATLIPRPDTECLVEQALARLP--------EQPCR 112 (277)
T ss_pred CCCCHHHHHHHHHHHHHHH--CC--CCHHHHHCEEEEEEEEEEECCCEEEECCCHHHHHHHHHHHCC--------CCCCE
T ss_conf 8999999999999999998--69--978998382156525898779836408817999999999645--------37881
Q ss_pred EEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCHHHHEEC--------
Q ss_conf 888569856999999731--98169952135677888865310112-1111221001232111530130012--------
Q gi|254780872|r 70 ILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAETDEKFDIILNM-------- 138 (254)
Q Consensus 70 VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~~~~~FD~V~~~-------- 138 (254)
|||+|||+|-.+..+++. .++|+|+|+|+.++++|+.+++..++ ++++.+++.-+- ....+||+|+|.
T Consensus 113 ilDlgtGSGcI~isLa~~~p~~~v~a~DiS~~Al~~A~~Na~~~~l~~v~~~~~d~~~~-~~~~~fDlIVSNPPYI~~~~ 191 (277)
T PRK09328 113 ILDLGTGTGAIALALASERPDCEVTAVDRMPDAVALAQRNAQHLAIKNVRILQSDWFSA-LSGQQFAMIVSNPPYIDAQD 191 (277)
T ss_pred EEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHH-CCCCCCCEEEECCCCCCCCH
T ss_conf 89954556999999998677989999648999999999999980988699994475211-37877788997899877000
Q ss_pred -CCHH----CC--------CC----HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCC
Q ss_conf -4310----26--------88----8899888875213332157743676602456415655431046789985712253
Q gi|254780872|r 139 -EVIE----HV--------DN----IPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFI 201 (254)
Q Consensus 139 -~vle----Hv--------~d----~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi 201 (254)
..++ |= .| ...+++...+.|+|||.+++.. + +.
T Consensus 192 ~~~~~~~v~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~Ei-g--------------------------~~--- 241 (277)
T PRK09328 192 PHLQQGDVRFEPLSALVAADNGMADLAHIIEQARQYLVPGGWLLLEH-G--------------------------WQ--- 241 (277)
T ss_pred HHHCCHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE-C--------------------------HH---
T ss_conf 34382421668389981797589999999999998446698999996-8--------------------------15---
Q ss_pred CHHHHHHHHHHCCCEEEEEE
Q ss_conf 88999999998698388855
Q gi|254780872|r 202 KPTEMECFLAANKVKIIDRV 221 (254)
Q Consensus 202 ~p~el~~~l~~~g~~~~~~~ 221 (254)
..+.+.++++++||..+++.
T Consensus 242 Q~~~v~~l~~~~gf~~i~~~ 261 (277)
T PRK09328 242 QGEAVRQLFIRAGYSDVETC 261 (277)
T ss_pred HHHHHHHHHHHCCCCEEEEE
T ss_conf 89999999996799704786
No 50
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.48 E-value=2.3e-13 Score=103.56 Aligned_cols=101 Identities=29% Similarity=0.332 Sum_probs=77.8
Q ss_pred HHHCCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCC--CCCCCCCC-CCCCCCCCCCHHHHEEC-
Q ss_conf 00162888569856999999731--98169952135677888865310112--11112210-01232111530130012-
Q gi|254780872|r 65 FKGLRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNI--NIDYRVSC-AEEIAETDEKFDIILNM- 138 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~--~i~~~~~~-~~~l~~~~~~FD~V~~~- 138 (254)
-+..+|||+|||+|-.+..++.. .++|+|+|+|++++++|+.++...++ .+.+.+++ .+.+ ..++||+|+|.
T Consensus 134 ~~~~~ILDLGTGSGcIaISLa~e~p~a~v~avDIS~~AL~vAk~Na~~~~v~~ri~fi~sdwfe~l--~~~kFDlIVSNP 211 (503)
T PRK01544 134 DKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI--GKQKFDFIVSNP 211 (503)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHCC--CCCCCCEEEECC
T ss_conf 557727884666799999999867899899998989999999999998088201799965531015--888724798389
Q ss_pred -------------CCHHCCCC------------HHHHHHHHHHHCCCCCEEEEE
Q ss_conf -------------43102688------------889988887521333215774
Q gi|254780872|r 139 -------------EVIEHVDN------------IPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 139 -------------~vleHv~d------------~~~~l~~~~~~LkpgG~liis 167 (254)
+|+.|=|. ....++++.+.|+|||.+++.
T Consensus 212 PYI~~~e~~~L~~eV~~yEP~lAL~ggeDGL~~Yr~Ia~~a~~~Lkp~G~l~lE 265 (503)
T PRK01544 212 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 265 (503)
T ss_pred CCCCHHHHHHCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 988756666527665316937886488762899999999889852889889999
No 51
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.48 E-value=9.3e-14 Score=105.99 Aligned_cols=155 Identities=20% Similarity=0.253 Sum_probs=110.0
Q ss_pred CCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCC
Q ss_conf 62888569856999999731--9816995213567788886531011211112210012321115301300124310268
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVD 145 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~ 145 (254)
.+|.|+|||+|..++.|+++ ++.++|||.|+.||+.|++ ...+.+|..+++.+. .....+|++++..||+.++
T Consensus 32 ~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~----rlp~~~f~~aDl~~w-~p~~~~dllfaNAvlqWlp 106 (257)
T COG4106 32 RRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ----RLPDATFEEADLRTW-KPEQPTDLLFANAVLQWLP 106 (257)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH----HCCCCCEECCCHHHC-CCCCCCCHHHHHHHHHHCC
T ss_conf 10345577887788999986888867604699999999997----489973210527544-9987633033443664436
Q ss_pred CHHHHHHHHHHHCCCCCEEEEECCC-CCCHHHHHHHHHHH---H--HCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEE
Q ss_conf 8889988887521333215774367-66024564156554---3--1046789985712253889999999986983888
Q gi|254780872|r 146 NIPYFIKTCCSLLLSNGLMFISTIN-RNLKAMLLAIIGAE---Y--LLQWLPKGTHQYDKFIKPTEMECFLAANKVKIID 219 (254)
Q Consensus 146 d~~~~l~~~~~~LkpgG~liist~N-r~~~s~~~~i~~ae---~--il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~ 219 (254)
|-...|..+...|.|||.|-+..|+ ..-.|...+--.|+ + -++-.+. + -..-.+|+.-.++|...+.++--
T Consensus 107 dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~-~--r~~v~s~a~Yy~lLa~~~~rvDi 183 (257)
T COG4106 107 DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGL-T--RAPLPSPAAYYELLAPLACRVDI 183 (257)
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC-C--CCCCCCHHHHHHHHCCCCCEEEE
T ss_conf 40899999998508885699978876476457999998742836666276654-4--67789989999985765432554
Q ss_pred EEEEEECCCCC
Q ss_conf 55057667777
Q gi|254780872|r 220 RVGVVYNVFCN 230 (254)
Q Consensus 220 ~~g~~~~p~~~ 230 (254)
-+-..|+|+.+
T Consensus 184 W~T~Y~h~l~~ 194 (257)
T COG4106 184 WHTTYYHQLPG 194 (257)
T ss_pred EEEECCCCCCC
T ss_conf 54123433798
No 52
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.47 E-value=3e-12 Score=96.63 Aligned_cols=153 Identities=17% Similarity=0.146 Sum_probs=110.3
Q ss_pred CCHHHCCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCHHHHEECC
Q ss_conf 8800162888569856999999731--98169952135677888865310112-11112210012321115301300124
Q gi|254780872|r 63 HPFKGLRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAETDEKFDIILNME 139 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~~~~~FD~V~~~~ 139 (254)
.+..|..++|||||+|..+..+++. +.+|++||.++++++.+++++++.++ |++...+.+..- ..+.+|.|+.-+
T Consensus 27 ~l~~~~vvwDIGaGsGsvsiEaa~~~p~~~V~AvE~~~~~~~~i~~N~~~fg~~nv~~i~g~Ap~~--l~~~pD~vFIGG 104 (186)
T PRK08287 27 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPAALRLIKENRQRFGCGNIDIIPGEAPIT--LTGKADAIFMGG 104 (186)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHH--CCCCCCEEEEEC
T ss_conf 999999999957887789999999789988999937989999999989972999879993778110--357898499974
Q ss_pred CHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEE
Q ss_conf 31026888899888875213332157743676602456415655431046789985712253889999999986983888
Q gi|254780872|r 140 VIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIID 219 (254)
Q Consensus 140 vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~ 219 (254)
- -.+....|..+...|+|||+++++.+ ++ | +-.+..+++++.|+...+
T Consensus 105 s---gg~l~~il~~~~~~L~~gGriVinav--tl----------e-----------------t~~~a~~~~~~~~~~~~e 152 (186)
T PRK08287 105 S---GGHLTAIIDWALGHLHPGGRLVLNFI--LQ----------E-----------------NLHSALAHLEKIGACELD 152 (186)
T ss_pred C---CCCHHHHHHHHHHHCCCCCEEEEEEE--EH----------H-----------------HHHHHHHHHHHCCCCCEE
T ss_conf 7---89889999999975799989999826--08----------7-----------------799999999976997615
Q ss_pred EEEEE---ECCCCCEEEECCCCCCEEEEEEEECCC
Q ss_conf 55057---667777578647886451799997587
Q gi|254780872|r 220 RVGVV---YNVFCNKWQLSAKNMDVNYMVLGHLPK 251 (254)
Q Consensus 220 ~~g~~---~~p~~~~w~~~~~~~~vnY~~~~~kp~ 251 (254)
+.-+. -.|+.+...+.+.|+ -|+++++|++
T Consensus 153 ~~qv~vsr~~~lg~~~~~~~~NP--Vfii~a~K~e 185 (186)
T PRK08287 153 CVQLQVSSLTPLGAGHYFKPNNP--TFIIACKKEE 185 (186)
T ss_pred EEEEEEEECCCCCCCCEEECCCC--EEEEEEEECC
T ss_conf 99999013747278865616899--7999999468
No 53
>PRK09329 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.47 E-value=1.6e-12 Score=98.28 Aligned_cols=168 Identities=15% Similarity=0.213 Sum_probs=108.1
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHH-------------HCHH----H--HHHHHHHHHHHCCCCCCCCCCHHHC
Q ss_conf 6789889999999998874688887126775-------------1756----5--9999999886518764445880016
Q gi|254780872|r 8 YTTKNQDAINQFSNIASEWWEPTGKFKPLHQ-------------INPV----R--IKYIQDKIMQHFQCKSDDTHPFKGL 68 (254)
Q Consensus 8 ~~t~~~~ei~~F~~~a~~WwD~~g~~~~Lh~-------------~N~~----R--~~~I~~~i~~~~~~~~~~~~~l~g~ 68 (254)
...++.++.++|..+-.+= ..-.||.. .||- | .+.+.+.+...+.... +..
T Consensus 42 ~~~l~~~~~~~~~~~i~RR----~~gePl~YI~G~~~F~g~~f~V~~~VLIPRpETE~LVe~~l~~~~~~~------~~~ 111 (285)
T PRK09329 42 DLVLSEEELMTYWKRLQKR----GQRCPTAYIHGSVHFLGLELQVDPRVLIPRQETEILVEKIIGYLQSHK------EIQ 111 (285)
T ss_pred CCCCCHHHHHHHHHHHHHH----HCCCCHHHHHCCCEECCCEEEECCCCEECCCHHHHHHHHHHHHHHHCC------CCC
T ss_conf 3899999999999999999----879949998270454495788689842059609999999999986187------777
Q ss_pred CEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEEC--------
Q ss_conf 2888569856999999731--981699521356778888653101121111221001232111530130012--------
Q gi|254780872|r 69 RILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNM-------- 138 (254)
Q Consensus 69 ~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~-------- 138 (254)
.+||+|||+|..+..+++. .++|+|+|+|+.++++|+.+++..+++++|.+++.-+ ....+||+|+|.
T Consensus 112 ~~lDlGtGSG~I~isla~~~p~~~v~avDiS~~Al~~A~~Na~~~~~~v~~~~~dl~~--~~~~~~DlIvSNPPYI~~~e 189 (285)
T PRK09329 112 TFYDVCCGSGCIGLAIKKHCPHVHVVLSDICPQALAVAKSNAKSNGLDVDFLLGDLFA--PFSRPADAFVCNPPYLSFKE 189 (285)
T ss_pred EEEEECCCHHHHHHHHHHHCCCCEEEHHHCCHHHHHHHHHHHHHCCCCEEEEECCHHH--HHCCCCCEEEECCCCCCHHH
T ss_conf 7888454179999999985898658803376999999999999729947999763003--33476788998999888444
Q ss_pred ------CCHHCCC------------CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHC
Q ss_conf ------4310268------------8889988887521333215774367660245641565543104678998571225
Q gi|254780872|r 139 ------EVIEHVD------------NIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKF 200 (254)
Q Consensus 139 ------~vleHv~------------d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~F 200 (254)
+|..|=| ....+++.+.+.|+|||.+++.. .|+
T Consensus 190 ~~~l~~eV~~~EP~~AL~gg~dGl~~~r~i~~~a~~~L~~~G~l~~Ei---------------------------g~~-- 240 (285)
T PRK09329 190 FFHVDPEVRCHEPWKALVGGSSGLEFYQRIAQELPKILVPGGVGWLEI---------------------------GSS-- 240 (285)
T ss_pred HHHCCHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE---------------------------CCH--
T ss_conf 544987554367099884797389999999999999600498899996---------------------------854--
Q ss_pred CCHHHHHHHHHHCCCEE
Q ss_conf 38899999999869838
Q gi|254780872|r 201 IKPTEMECFLAANKVKI 217 (254)
Q Consensus 201 i~p~el~~~l~~~g~~~ 217 (254)
..+++.++++++||..
T Consensus 241 -Q~~~v~~l~~~~g~~~ 256 (285)
T PRK09329 241 -QGESVKKIFAKHGISG 256 (285)
T ss_pred -HHHHHHHHHHHCCCCC
T ss_conf -8999999999669964
No 54
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.42 E-value=3.1e-13 Score=102.73 Aligned_cols=136 Identities=24% Similarity=0.378 Sum_probs=99.9
Q ss_pred HHHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCC
Q ss_conf 00162888569856999999731981699521356778888653101121111221001232111530130012431026
Q gi|254780872|r 65 FKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHV 144 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv 144 (254)
++..++||+|||.|+-|..|+.+|++|||+|+++..|+..+.-+.+.+++|+....|+..... ++.||+|+|.-|+..+
T Consensus 121 i~pgkaLDLGCG~GRNsLyLa~~GfdVTA~D~N~~sl~~L~~ia~~E~L~i~~~~yDIN~a~l-~~~YDfI~STVV~mFL 199 (289)
T PRK12335 121 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQASLENLQQIAEKENLNIRAGSYDINSASL-QEEYDFILSTVVLMFL 199 (289)
T ss_pred CCCCCEEEECCCCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEECCCCCCC-CCCCCEEEEEEEEEEE
T ss_conf 688746660478882278897579842588689999999999999719887725751666666-7776789996788642
Q ss_pred C--CHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 8--888998888752133321-577436766024564156554310467899857122538899999999869838885
Q gi|254780872|r 145 D--NIPYFIKTCCSLLLSNGL-MFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDR 220 (254)
Q Consensus 145 ~--d~~~~l~~~~~~LkpgG~-liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~ 220 (254)
. -...++.++.+...|||+ |+++-.+-. ++-.. +| +.-.+.+.||...-+ |+++++.
T Consensus 200 ~~~~ip~iI~nMQ~~T~~gGyNlIV~am~T~-----------d~pc~-~p-----F~ftfk~gEL~~YY~--dWeiikY 259 (289)
T PRK12335 200 NPERIPDIIKNMQEHTNPGGYNLIVCAMDTE-----------DYPCP-MP-----FPFTFKEGELKDYYQ--DWEILKY 259 (289)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEEECCCC-----------CCCCC-CC-----CCCCCCCHHHHHHHC--CCEEEEE
T ss_conf 8778699999999844799868999871477-----------78899-88-----662567206888747--8779983
No 55
>pfam05219 DREV DREV methyltransferase. This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown. However, these proteins appear to be related to other methyltransferases (Bateman A pers obs).
Probab=99.42 E-value=2e-12 Score=97.74 Aligned_cols=149 Identities=19% Similarity=0.207 Sum_probs=102.0
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCC
Q ss_conf 01628885698569999997319816995213567788886531011211112210012321115301300124310268
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVD 145 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~ 145 (254)
+..++||||.|.|..+..|+..-.+|.+.+.|..|....++ .+.+ +.+..+....+.+||+|.|++||-...
T Consensus 94 ~~~~LLDlGAGdG~VT~~la~~F~~V~aTE~S~~Mr~rL~~----rgf~----vl~~~~~~~~~~~fDvIscLNvLDRc~ 165 (265)
T pfam05219 94 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKK----KNYN----VLTEIEWQETDVNLDLILCLNLLDRCF 165 (265)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCEEEEEECCHHHHHHHHH----CCCE----EEEEHHCCCCCCCEEEEHHHHHHHCCC
T ss_conf 76647883589978999999752358887278999999997----5986----875012035687445542224453138
Q ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH-HHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 88899888875213332157743676602456415655-43104678998571225388999999998698388855057
Q gi|254780872|r 146 NIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGA-EYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVGVV 224 (254)
Q Consensus 146 d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~a-e~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~g~~ 224 (254)
+|...|+++++.|+|+|+++++..= -+..|.-...+. ...-..+|-....|+..+ ..+.+.++.+||++.....+=
T Consensus 166 ~P~~LL~~i~~~L~P~G~lilAvVl-Pf~pyVE~~~~~~~~p~e~l~~~g~~~E~~v--~~l~~vl~p~GF~v~~~tR~P 242 (265)
T pfam05219 166 DPFKLLEDIHLALAPNGRVIVALVL-PYMHYVETNTGSHLPPRPLLENNGASFEEEV--ARFMEVFENAGFRVEAWTRLP 242 (265)
T ss_pred CHHHHHHHHHHHCCCCCEEEEEEEE-CCCCEEECCCCCCCCCHHHCCCCCCCHHHHH--HHHHHHHHCCCCEEEEEECCC
T ss_conf 8699999999724999679999982-5620177589877995211378998099999--999998760795788873267
Q ss_pred E
Q ss_conf 6
Q gi|254780872|r 225 Y 225 (254)
Q Consensus 225 ~ 225 (254)
|
T Consensus 243 Y 243 (265)
T pfam05219 243 Y 243 (265)
T ss_pred C
T ss_conf 3
No 56
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.41 E-value=6.2e-13 Score=100.89 Aligned_cols=101 Identities=24% Similarity=0.306 Sum_probs=77.0
Q ss_pred HCCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCHHHHEEC----
Q ss_conf 162888569856999999731--981699521356778888653101121--111221001232111530130012----
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNIN--IDYRVSCAEEIAETDEKFDIILNM---- 138 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~~--i~~~~~~~~~l~~~~~~FD~V~~~---- 138 (254)
..+|||+|||+|.++..+++. .++|+|+|+|+.++++|+.++...++. +++.+++.-+- ....+||+|+|.
T Consensus 122 ~~~iLDlGtGSG~Iai~la~~~p~~~v~a~DiS~~Al~~A~~N~~~~~l~~rv~~~~~D~~~~-~~~~~fDlIVSNPPYI 200 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH-CCCCCCCEEEECCCCC
T ss_conf 771555216807999999987899879999899999999999998608543368883514331-4577778799779978
Q ss_pred --CC-------HHCC------------CCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf --43-------1026------------888899888875213332157743
Q gi|254780872|r 139 --EV-------IEHV------------DNIPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 139 --~v-------leHv------------~d~~~~l~~~~~~LkpgG~liist 168 (254)
.. +.|= .....+++++.+.|+|||.+++..
T Consensus 201 ~~~e~~~l~~ev~~EP~~AL~gG~dGL~~yr~Ii~~a~~~L~pgG~l~lEi 251 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CHHHHHHCCHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 846554497641158699875895587999999998898425697899997
No 57
>KOG3010 consensus
Probab=99.41 E-value=1.9e-13 Score=104.02 Aligned_cols=96 Identities=19% Similarity=0.264 Sum_probs=74.3
Q ss_pred CEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCCCHHHHEECCCHHCCCC
Q ss_conf 28885698569999997319816995213567788886531011211112--2100123211153013001243102688
Q gi|254780872|r 69 RILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYR--VSCAEEIAETDEKFDIILNMEVIEHVDN 146 (254)
Q Consensus 69 ~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~--~~~~~~l~~~~~~FD~V~~~~vleHv~d 146 (254)
.++|+|||+|.-+..+|..--+|+|+|+|+.||++|+.+........-.. .....+|.-.+++-|+|+|.+.+|. =|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW-Fd 114 (261)
T KOG3010 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW-FD 114 (261)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHH-HC
T ss_conf 58884568871147888754343130687999998611898620457853456656532378764121105456776-34
Q ss_pred HHHHHHHHHHHCCCCCEEE
Q ss_conf 8899888875213332157
Q gi|254780872|r 147 IPYFIKTCCSLLLSNGLMF 165 (254)
Q Consensus 147 ~~~~l~~~~~~LkpgG~li 165 (254)
.+.+.++++|+|||+|-++
T Consensus 115 le~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010 115 LERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred HHHHHHHHHHHCCCCCCEE
T ss_conf 2999999999807789779
No 58
>KOG2899 consensus
Probab=99.40 E-value=3.7e-12 Score=96.07 Aligned_cols=151 Identities=24% Similarity=0.430 Sum_probs=101.4
Q ss_pred HHHCCEEEECCCHHHHHHHHHHC-CC-CEEEECCHHHHHHHHHHHHHCCCC-----------------------------
Q ss_conf 00162888569856999999731-98-169952135677888865310112-----------------------------
Q gi|254780872|r 65 FKGLRILDLGCGGGLLSEPMAQM-GA-TVTGIDPSTKNIAIAKNHANMKNI----------------------------- 113 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s~~la~~-g~-~V~giD~S~~~i~~Ak~~a~~~~~----------------------------- 113 (254)
+.++.+|||||..|.++..+|+. |. .|+|+|+.+..|..|+.+.+.-.-
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 47620575067754658999986064334676156899999997356601010334578754335444541012446651
Q ss_pred -------CC-----CCCCCCCCCCCCCCCCHHHHEECCCHH--CCC----CHHHHHHHHHHHCCCCCEEEEECCCCCCHH
Q ss_conf -------11-----112210012321115301300124310--268----888998888752133321577436766024
Q gi|254780872|r 114 -------NI-----DYRVSCAEEIAETDEKFDIILNMEVIE--HVD----NIPYFIKTCCSLLLSNGLMFISTINRNLKA 175 (254)
Q Consensus 114 -------~i-----~~~~~~~~~l~~~~~~FD~V~~~~vle--Hv~----d~~~~l~~~~~~LkpgG~liist~Nr~~~s 175 (254)
++ +|.....+-+......||+|+|+-+-- |+. -...+++.++++|.|||+|++. | .-|.|
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE-P-QpWks 214 (288)
T KOG2899 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE-P-QPWKS 214 (288)
T ss_pred CCCCCCCCHHCCCCCEEEECCHHHHHCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEC-C-CCHHH
T ss_conf 003677201013233798600455505654227999773346764564578999999999860868579975-8-86177
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 564156554310467899857122538899999999869838885505
Q gi|254780872|r 176 MLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVGV 223 (254)
Q Consensus 176 ~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~g~ 223 (254)
|..+--..|-+ . -|.+.-|+.|+.-..++.+.+.-.....++
T Consensus 215 Y~kaar~~e~~-~-----~ny~~i~lkp~~f~~~l~q~~vgle~~e~~ 256 (288)
T KOG2899 215 YKKAARRSEKL-A-----ANYFKIFLKPEDFEDWLNQIVVGLESVEDL 256 (288)
T ss_pred HHHHHHHHHHH-H-----CCCCCEECCHHHHHHHHHHHHHHEEEECCC
T ss_conf 99999999986-0-----584010328889876542023323210010
No 59
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.39 E-value=1.6e-11 Score=92.07 Aligned_cols=154 Identities=18% Similarity=0.166 Sum_probs=109.0
Q ss_pred CCCHHHCCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCHHHHEEC
Q ss_conf 58800162888569856999999731--98169952135677888865310112-1111221001232111530130012
Q gi|254780872|r 62 THPFKGLRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAETDEKFDIILNM 138 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~~~~~FD~V~~~ 138 (254)
..|-+|..++|||||||.++..++.. ..+|++||-++++++..++++..-+. |+....+++.+......+||.|+.-
T Consensus 30 L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIG 109 (187)
T COG2242 30 LRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIG 109 (187)
T ss_pred HCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCCCEEEEC
T ss_conf 08899998999578866899999973988559999258889999999999849996799954645763699999999987
Q ss_pred CCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCC-EE
Q ss_conf 43102688889988887521333215774367660245641565543104678998571225388999999998698-38
Q gi|254780872|r 139 EVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKV-KI 217 (254)
Q Consensus 139 ~vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~-~~ 217 (254)
+- .+...+|+.+...|||||.++...+. + | +-..+.+++++.|+ ++
T Consensus 110 Gg----~~i~~ile~~~~~l~~ggrlV~nait--l----------E-----------------~~~~a~~~~~~~g~~ei 156 (187)
T COG2242 110 GG----GNIEEILEAAWERLKPGGRLVANAIT--L----------E-----------------TLAKALEALEQLGGREI 156 (187)
T ss_pred CC----CCHHHHHHHHHHHCCCCCEEEEEEEC--H----------H-----------------HHHHHHHHHHHCCCCEE
T ss_conf 98----77789999999971868769998600--8----------8-----------------89999999997298569
Q ss_pred EEEEEEEECCCCCEEEECCCCCCEEEEEEEECC
Q ss_conf 885505766777757864788645179999758
Q gi|254780872|r 218 IDRVGVVYNVFCNKWQLSAKNMDVNYMVLGHLP 250 (254)
Q Consensus 218 ~~~~g~~~~p~~~~w~~~~~~~~vnY~~~~~kp 250 (254)
+.+.=-.-.++...-.+.+.|+. |++.+.||
T Consensus 157 ~~v~is~~~~lg~~~~~~~~nPv--~i~~g~k~ 187 (187)
T COG2242 157 VQVQISRGKPLGGGTMFRPVNPV--FIISGVKP 187 (187)
T ss_pred EEEEEECCEECCCEEEEECCCCE--EEEEEECC
T ss_conf 99984235252670576268977--99987449
No 60
>TIGR00537 hemK_rel_arch methylase, putative; InterPro: IPR004557 These proteins exhibit homology to the Saccharomyces cerevisiae (yeast) ORF YDR140w (FYV9). No known function has been described for this yeast ORF though the null mutant is viable and exhibits K1 killer toxin hypersensitivity. Members of this entry are weakly related to the yeast ORF YNL063w which is a putative S-adenosyl-methionine-dependent methyltransferase . Members of this entry are found in archaeal, bacterial and eukaryotic lineages.; GO: 0008168 methyltransferase activity.
Probab=99.39 E-value=2.2e-12 Score=97.45 Aligned_cols=122 Identities=20% Similarity=0.304 Sum_probs=95.8
Q ss_pred HHHCC-EEEECCCHHHHHHHHHHCCC-CEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEEC----
Q ss_conf 00162-88856985699999973198-1699521356778888653101121111221001232111530130012----
Q gi|254780872|r 65 FKGLR-ILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNM---- 138 (254)
Q Consensus 65 l~g~~-VLDiGCG~G~~s~~la~~g~-~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~---- 138 (254)
+++.+ |||||.|||+.|+.+++.|. .|+|+|+||-++..+|++|..++.++++.++|+-+- -..++||+|...
T Consensus 19 ~k~ddeVlEiG~GtGlvair~~~Kg~k~i~~tDinP~Avk~~~~NA~~N~~~l~v~~~Dlf~~-v~geKFdviLFNpPYl 97 (183)
T TIGR00537 19 LKPDDEVLEIGAGTGLVAIRLKEKGKKKILTTDINPFAVKLLRENAKLNNVELDVLETDLFEG-VRGEKFDVILFNPPYL 97 (183)
T ss_pred HCCCCEEEEEECCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCHHCCCCEEEEECCCCCC-CCCCCEEEEEECCCCC
T ss_conf 169952899716804899998515882078863687999987731000266404761113578-5555102773078988
Q ss_pred ---------CCHHCC----CC----HHHHHHHHHHHCCCCCEEEE--ECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf ---------431026----88----88998888752133321577--436766024564156554310467899857122
Q gi|254780872|r 139 ---------EVIEHV----DN----IPYFIKTCCSLLLSNGLMFI--STINRNLKAMLLAIIGAEYLLQWLPKGTHQYDK 199 (254)
Q Consensus 139 ---------~vleHv----~d----~~~~l~~~~~~LkpgG~lii--st~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~ 199 (254)
.+|.-- +| ..+||.++-..||+||++.+ |..| |
T Consensus 98 p~~~d~~~gd~Ld~A~dGGkdGr~vidrFldelp~~lk~gGrv~l~~SSl~----------------------~------ 149 (183)
T TIGR00537 98 PLEDDEKRGDYLDLAIDGGKDGRKVIDRFLDELPEYLKEGGRVQLIQSSLS----------------------D------ 149 (183)
T ss_pred CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCC----------------------C------
T ss_conf 887652347664433317873057888887656888705998999960668----------------------8------
Q ss_pred CCCHHHHHHHHHHCCCEEE
Q ss_conf 5388999999998698388
Q gi|254780872|r 200 FIKPTEMECFLAANKVKII 218 (254)
Q Consensus 200 Fi~p~el~~~l~~~g~~~~ 218 (254)
..+..+.++.-||+..
T Consensus 150 ---e~~~~~kl~~~GF~~e 165 (183)
T TIGR00537 150 ---EKDTLDKLDELGFKVE 165 (183)
T ss_pred ---CHHHHHHHHHCCCCEE
T ss_conf ---6889988761588479
No 61
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=99.38 E-value=3e-12 Score=96.68 Aligned_cols=96 Identities=21% Similarity=0.290 Sum_probs=78.0
Q ss_pred HHCCEEEECCCHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCHHHHEECCCH
Q ss_conf 0162888569856999999731---98169952135677888865310112-1111221001232111530130012431
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAETDEKFDIILNMEVI 141 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~---g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~~~~~FD~V~~~~vl 141 (254)
.|.+|||||||+|+.+..|+++ ...|++||..+++++.|+.+....+. |+.+..++...-......||.|++....
T Consensus 73 ~g~~VLeIGtGsGY~tAlLa~l~~~~g~V~~iE~~~~l~~~A~~~l~~~~~~nV~~~~gdg~~g~~~~apfD~Iiv~aa~ 152 (205)
T pfam01135 73 PGMRVLEIGSGSGYLTACFARMVGEVGRVVSIEHIPELVEIARRNLEKLGLENVIVVVGDGRQGWPEFAPYDAIHVGAAA 152 (205)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEEEC
T ss_conf 99989996699659999999983878769998358999999999999848886589845645588333980589997506
Q ss_pred HCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 02688889988887521333215774
Q gi|254780872|r 142 EHVDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 142 eHv~d~~~~l~~~~~~LkpgG~liis 167 (254)
+++|+ .+.+.|++||+|++-
T Consensus 153 ~~iP~------~l~~qL~~gGrLv~p 172 (205)
T pfam01135 153 PEIPE------ALIDQLKEGGRLVIP 172 (205)
T ss_pred CCCCH------HHHHHCCCCCEEEEE
T ss_conf 76889------999962879789999
No 62
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.38 E-value=1.4e-12 Score=98.62 Aligned_cols=103 Identities=21% Similarity=0.282 Sum_probs=78.0
Q ss_pred HCCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCHHHHEEC----
Q ss_conf 162888569856999999731--981699521356778888653101121--111221001232111530130012----
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNIN--IDYRVSCAEEIAETDEKFDIILNM---- 138 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~~--i~~~~~~~~~l~~~~~~FD~V~~~---- 138 (254)
..+|||+|||+|.++..++.. .++|+|+|+|+.++++|+.++...++. +.+.+++.-+- ...++||+|+|.
T Consensus 134 ~~rilDlGtGSG~Iaisla~~~p~~~v~a~Dis~~AL~vA~~N~~~~~l~~rv~~~~~D~~~~-l~~~~fDlIvSNPPYI 212 (307)
T PRK11805 134 PTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRRYDLIVSNPPYV 212 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHC-CCCCCCCEEEECCCCC
T ss_conf 872777427827999999987899889998589999999999999838877389980402212-6887507799679978
Q ss_pred --CC-------HHCCC------------CHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf --43-------10268------------8889988887521333215774367
Q gi|254780872|r 139 --EV-------IEHVD------------NIPYFIKTCCSLLLSNGLMFISTIN 170 (254)
Q Consensus 139 --~v-------leHv~------------d~~~~l~~~~~~LkpgG~liist~N 170 (254)
.. +.|=| -...++++..+.|+|||.+++..=|
T Consensus 213 ~~~~~~~L~~ev~~EP~~AL~gG~DGLd~~r~i~~~A~~~L~pgG~L~~EiG~ 265 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAADYLTEDGVLVCEVGN 265 (307)
T ss_pred CHHHHHHCCHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 85656339775315878887689248899999999889744769689999797
No 63
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.37 E-value=5.8e-12 Score=94.87 Aligned_cols=129 Identities=22% Similarity=0.294 Sum_probs=97.5
Q ss_pred HHCCEEEECCCHHHHHHHHHHC-C-CCEEEECCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCC--CCCHHHHEECC
Q ss_conf 0162888569856999999731-9-8169952135677888865310112--111122100123211--15301300124
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM-G-ATVTGIDPSTKNIAIAKNHANMKNI--NIDYRVSCAEEIAET--DEKFDIILNME 139 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~-g-~~V~giD~S~~~i~~Ak~~a~~~~~--~i~~~~~~~~~l~~~--~~~FD~V~~~~ 139 (254)
...+|||+|||+|.++..+|++ . ++++|||+++.|.+.|+...+.+.+ .|++.++|+.++... ..+||+|+|.=
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred CCCEEEEECCCCCHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHCCCHHHEEEEHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 68769883689468999974558778079998179999999998861861340167643088765423656547899598
Q ss_pred CH----------------HCC--CCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCC
Q ss_conf 31----------------026--888899888875213332157743676602456415655431046789985712253
Q gi|254780872|r 140 VI----------------EHV--DNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFI 201 (254)
Q Consensus 140 vl----------------eHv--~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi 201 (254)
-. +|. -+.+.+++.+.++|||||.+.+-- ..++.
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~---------------------------r~erl- 175 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH---------------------------RPERL- 175 (248)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEE---------------------------CHHHH-
T ss_conf 98787533486746655663222889999999999746797899995---------------------------58888-
Q ss_pred CHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 88999999998698388855057
Q gi|254780872|r 202 KPTEMECFLAANKVKIIDRVGVV 224 (254)
Q Consensus 202 ~p~el~~~l~~~g~~~~~~~g~~ 224 (254)
.|+..++.+.+|+...+.-+.
T Consensus 176 --~ei~~~l~~~~~~~k~i~~V~ 196 (248)
T COG4123 176 --AEIIELLKSYNLEPKRIQFVY 196 (248)
T ss_pred --HHHHHHHHHCCCCCEEEEEEC
T ss_conf --999999986698715899862
No 64
>KOG2940 consensus
Probab=99.37 E-value=1.3e-12 Score=98.83 Aligned_cols=148 Identities=19% Similarity=0.280 Sum_probs=113.2
Q ss_pred CCEEEECCCHHHHHHHHHHCC-CCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCC
Q ss_conf 628885698569999997319-8169952135677888865310112111122100123211153013001243102688
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQMG-ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVDN 146 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~g-~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d 146 (254)
..++|||||-|.++..+...| -+.+-+|.|-.|++.++. +...++...|..++-|.+++.+++||+|+++.-+|++.|
T Consensus 74 p~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~-~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~Nd 152 (325)
T KOG2940 74 PTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD-AQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTND 152 (325)
T ss_pred CCEEECCCCHHHHHHHHHHCCHHHEEEEECCHHHHHHHHC-CCCCCEEEEEEECCHHCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 5204406554465688775251340664041679997532-689853799972551015655350111265433456404
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCC-CCHHHHHHHHHH--HHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 8899888875213332157743676-602456415655--4310467899857122538899999999869838885
Q gi|254780872|r 147 IPYFIKTCCSLLLSNGLMFISTINR-NLKAMLLAIIGA--EYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDR 220 (254)
Q Consensus 147 ~~~~l~~~~~~LkpgG~liist~Nr-~~~s~~~~i~~a--e~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~ 220 (254)
.+..+..|...|||+|.++-|.+.- |+...--..-.| |+.-++-| | -.-|..-.++-.+|.++||..+.+
T Consensus 153 LPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSp---h-iSPf~qvrDiG~LL~rAGF~m~tv 225 (325)
T KOG2940 153 LPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISP---H-ISPFTQVRDIGNLLTRAGFSMLTV 225 (325)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC---C-CCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 836899988742897512167756440999998763898875169887---7-670466556665776447664000
No 65
>KOG1541 consensus
Probab=99.36 E-value=4.9e-13 Score=101.50 Aligned_cols=99 Identities=22% Similarity=0.278 Sum_probs=76.3
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCHHHHEECCCHHCC
Q ss_conf 01628885698569999997319816995213567788886531011211112-21001232111530130012431026
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYR-VSCAEEIAETDEKFDIILNMEVIEHV 144 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~-~~~~~~l~~~~~~FD~V~~~~vleHv 144 (254)
+..=|||||||+|+-.+.+...|+...|+|+|+.|+++|..+--+ -++. +..-+-+|+..++||.|++...++.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e----gdlil~DMG~GlpfrpGtFDg~ISISAvQWL 125 (270)
T KOG1541 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE----GDLILCDMGEGLPFRPGTFDGVISISAVQWL 125 (270)
T ss_pred CCCEEEEECCCCCCCHHEECCCCCEEEEECCCHHHHHHHHHHHHH----CCEEEEECCCCCCCCCCCCCEEEEEEEEEEE
T ss_conf 871799834577743200216895588622898999999976640----4766312478878899741247886203210
Q ss_pred -------CCH----HHHHHHHHHHCCCCCEEEEEC
Q ss_conf -------888----899888875213332157743
Q gi|254780872|r 145 -------DNI----PYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 145 -------~d~----~~~l~~~~~~LkpgG~liist 168 (254)
.+| ..|+..++.+|++|+..++..
T Consensus 126 cnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541 126 CNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 14684446738999998664532103686158885
No 66
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.36 E-value=2e-11 Score=91.50 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=102.5
Q ss_pred HHHCCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCC-CCCCCCCHHHHEECCC
Q ss_conf 00162888569856999999731--98169952135677888865310112-11112210012-3211153013001243
Q gi|254780872|r 65 FKGLRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEE-IAETDEKFDIILNMEV 140 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~-l~~~~~~FD~V~~~~v 140 (254)
..|..++|||||||..+..+|+. +.+|++||.++++++.+++++++.++ |++..++++.+ +......+|.|+.-+-
T Consensus 39 ~~~~~vwDIGaGtGsVsiEaa~~~~~g~V~AIE~~~~a~~li~~N~~rfgv~nv~ii~g~ape~L~~l~p~pD~vFIGGg 118 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAALLCPKGRVIAIERDEEVANLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRICIEGG 118 (196)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCEEEECCC
T ss_conf 99999999478877999999987899889999768889999999899729998799972636668408999999998489
Q ss_pred HHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 10268888998888752133321577436766024564156554310467899857122538899999999869838885
Q gi|254780872|r 141 IEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDR 220 (254)
Q Consensus 141 leHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~ 220 (254)
.+....|+.+.+.|+|||+++++.+- +. +-.++.+.+++.++..+++
T Consensus 119 ----~~l~~il~~~~~~L~pgGriVinait--Le---------------------------tl~~~~~~l~~~~~~~~e~ 165 (196)
T PRK07402 119 ----RPIKEILQAVWQYLKPGGRLVATASS--LE---------------------------GLYAISEGLAQLQARNVEV 165 (196)
T ss_pred ----CCHHHHHHHHHHHCCCCCEEEEEEEE--HH---------------------------HHHHHHHHHHHCCCCCEEE
T ss_conf ----68899999999867999899998570--98---------------------------8999999999738876379
Q ss_pred EEEEE---CCCCCEEEECCCCCCEEEEEEEEC
Q ss_conf 50576---677775786478864517999975
Q gi|254780872|r 221 VGVVY---NVFCNKWQLSAKNMDVNYMVLGHL 249 (254)
Q Consensus 221 ~g~~~---~p~~~~w~~~~~~~~vnY~~~~~k 249 (254)
.-+.- .++.+.-.+.+.|.. |++.|+|
T Consensus 166 ~qv~vsr~~~lg~~~~~~a~NPV--fIi~a~K 195 (196)
T PRK07402 166 VQAAVNRLETRGRSQVFAAVDPI--FILSGEK 195 (196)
T ss_pred EEEEHHHCCCCCCCCEEECCCCE--EEEEEEE
T ss_conf 99975203233578556468997--9999997
No 67
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.36 E-value=2.5e-12 Score=97.16 Aligned_cols=96 Identities=20% Similarity=0.295 Sum_probs=78.6
Q ss_pred HHCCEEEECCCHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCHHHHEECCCH
Q ss_conf 0162888569856999999731---98169952135677888865310112-1111221001232111530130012431
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAETDEKFDIILNMEVI 141 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~---g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~~~~~FD~V~~~~vl 141 (254)
+|.+|||||||+|+.+.-|+++ +..|++||..+.+++.|+++....+. |+.+.+++...-......||.|++....
T Consensus 76 ~~~~VLeIGtGsGY~tAlla~lvg~~g~V~siE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~G~~~~apfD~Iiv~aa~ 155 (214)
T PRK13942 76 EGQKVLEIGTGSGYHAAVVAEIVGKSGKVTTIERIPELAEKAKKNLKKLGYENVEVILGDGTKGYEENAPYDRIYVTAAG 155 (214)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECC
T ss_conf 99979996799529999999974767857999717999999999998637687589856756678445981279998517
Q ss_pred HCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 02688889988887521333215774
Q gi|254780872|r 142 EHVDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 142 eHv~d~~~~l~~~~~~LkpgG~liis 167 (254)
+++|+ .+.+.|++||+|++-
T Consensus 156 ~~iP~------~l~~qL~~gGrLV~P 175 (214)
T PRK13942 156 PDIPK------PLLEQLKDGGIMVIP 175 (214)
T ss_pred CCCCH------HHHHHCCCCCEEEEE
T ss_conf 65789------999962889589999
No 68
>KOG1975 consensus
Probab=99.34 E-value=3.7e-12 Score=96.04 Aligned_cols=174 Identities=17% Similarity=0.280 Sum_probs=105.7
Q ss_pred HHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHH-HHHHHHHHCC-CCEEEECCHHHHHHHHHHHHHCCCC
Q ss_conf 7751756599999998865187644458800162888569856-9999997319-8169952135677888865310112
Q gi|254780872|r 36 LHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGG-LLSEPMAQMG-ATVTGIDPSTKNIAIAKNHANMKNI 113 (254)
Q Consensus 36 Lh~~N~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G-~~s~~la~~g-~~V~giD~S~~~i~~Ak~~a~~~~~ 113 (254)
|..+| .||.-.++..+... +..+||+|||-| -+... -+.| ..++|||+++-.|+.|+.+.+....
T Consensus 99 lRnfN----NwIKs~LI~~y~~~--------~~~~~~LgCGKGGDLlKw-~kAgI~~~igiDIAevSI~qa~~RYrdm~~ 165 (389)
T KOG1975 99 LRNFN----NWIKSVLINLYTKR--------GDDVLDLGCGKGGDLLKW-DKAGIGEYIGIDIAEVSINQARKRYRDMKN 165 (389)
T ss_pred HHHHH----HHHHHHHHHHHHCC--------CCCCCEECCCCCCCHHHH-HHHCCCCEEEEEHHHCCHHHHHHHHHHHHH
T ss_conf 66556----78999999998612--------230000056776207676-551456357653434009999999999986
Q ss_pred -------CCCCCCCCCC-----C-CCCCCCCHHHHEECCCHHCC----CCHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
Q ss_conf -------1111221001-----2-32111530130012431026----88889988887521333215774367660245
Q gi|254780872|r 114 -------NIDYRVSCAE-----E-IAETDEKFDIILNMEVIEHV----DNIPYFIKTCCSLLLSNGLMFISTINRNLKAM 176 (254)
Q Consensus 114 -------~i~~~~~~~~-----~-l~~~~~~FD~V~~~~vleHv----~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~ 176 (254)
.+.|..++.. + +++.+.+||+|.|--++|+- .....+|.+++++|+|||++|-++||.+.+-+
T Consensus 166 r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~ 245 (389)
T KOG1975 166 RFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIK 245 (389)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHCCCCCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHH
T ss_conf 66413651699971441668987425789885556554567543133888999999899635888579984696899999
Q ss_pred HHHHHHHH-------------HH---CCCCCC-CC--C-------CHHHCCCH-HHHHHHHHHCCCEEEEEEEE
Q ss_conf 64156554-------------31---046789-98--5-------71225388-99999999869838885505
Q gi|254780872|r 177 LLAIIGAE-------------YL---LQWLPK-GT--H-------QYDKFIKP-TEMECFLAANKVKIIDRVGV 223 (254)
Q Consensus 177 ~~~i~~ae-------------~i---l~~~P~-gt--H-------~~~~Fi~p-~el~~~l~~~g~~~~~~~g~ 223 (254)
-+.-...+ +. .. +|+ |. | +---|+-| ..+..++++.|++++.++++
T Consensus 246 rlr~~e~~~~gNdiykv~y~~~~~k~~~-~p~fG~kY~F~LedaVdcPEylV~F~~l~~lae~y~LeLv~~k~F 318 (389)
T KOG1975 246 RLRAGEVERFGNDIYKVTYEIEFQKEFD-VPPFGAKYRFHLEDAVDCPEYLVPFPTLVSLAEEYGLELVFVKPF 318 (389)
T ss_pred HHHHCCCHHHCCEEEEEEEEEECCCCCC-CCCCCCEEEEECCCCCCCCCEEEEHHHHHHHHHHCCCEEEEECCH
T ss_conf 9985111110460146750032133468-897653389970445577510401599999998629589884268
No 69
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.33 E-value=2.7e-12 Score=96.90 Aligned_cols=97 Identities=19% Similarity=0.218 Sum_probs=78.6
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCHHHHEECCCHHCC
Q ss_conf 016288856985699999973198169952135677888865310112-1111221001232111530130012431026
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAETDEKFDIILNMEVIEHV 144 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv 144 (254)
.|.+|||||||+|+.+.-|+++..+|++||..+.+.+.|+.+....+. |+.+..++...-......||.|+.....+++
T Consensus 78 ~~~~VLeIGtGsGY~tAlLa~l~~~V~siE~~~~l~~~a~~~l~~~~~~nv~~~~gdg~~g~~~~~pfD~Iii~~a~~~~ 157 (213)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLVERVFSVERIKTLQWQAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEI 157 (213)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHH
T ss_conf 99759996598609999999862928999428999999999999849987699968876678766972489998434122
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 888899888875213332157743
Q gi|254780872|r 145 DNIPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 145 ~d~~~~l~~~~~~LkpgG~liist 168 (254)
|+ .+.+.|++||+|++-.
T Consensus 158 P~------~l~~qL~~gGrLV~Pi 175 (213)
T PRK00312 158 PR------ALLDQLAEGGILVAPI 175 (213)
T ss_pred HH------HHHHHCCCCCEEEEEE
T ss_conf 59------9998453297999998
No 70
>TIGR00477 tehB tellurite resistance protein TehB; InterPro: IPR004537 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases . Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite.; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0046690 response to tellurium ion, 0005737 cytoplasm.
Probab=99.32 E-value=2.1e-12 Score=97.56 Aligned_cols=101 Identities=26% Similarity=0.381 Sum_probs=81.3
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCHHHHEECCCHHCC
Q ss_conf 0162888569856999999731981699521356778888653101121-111221001232111530130012431026
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNIN-IDYRVSCAEEIAETDEKFDIILNMEVIEHV 144 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~-i~~~~~~~~~l~~~~~~FD~V~~~~vleHv 144 (254)
+..|+||+|||.|.-|..|+-.|.+|.++|-|+..|+....-+.+.+++ ++-..-|+..+. .++.||.|++.=|+--+
T Consensus 73 ~PcKtLDLGCGqGrNsLyLsl~GYDV~awD~n~~siA~v~~~k~~EnL~nl~t~~yDiNaa~-~~e~YDFI~sTVVf~FL 151 (239)
T TIGR00477 73 KPCKTLDLGCGQGRNSLYLSLAGYDVDAWDHNEASIASVEEIKEKENLDNLRTDVYDINAAA-LDEDYDFILSTVVFMFL 151 (239)
T ss_pred CCCCEEECCCCCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-CCCCCCEEEEEHHHHHH
T ss_conf 79865326888853789997616841012168668875998887626711004655433554-01278742102012210
Q ss_pred C--CHHHHHHHHHHHCCCCCE-EEEE
Q ss_conf 8--888998888752133321-5774
Q gi|254780872|r 145 D--NIPYFIKTCCSLLLSNGL-MFIS 167 (254)
Q Consensus 145 ~--d~~~~l~~~~~~LkpgG~-liis 167 (254)
. -.+.+++++.++.||||+ ||+|
T Consensus 152 ~a~rvP~iIanMq~hT~pGGYNLIVa 177 (239)
T TIGR00477 152 EAERVPEIIANMQEHTKPGGYNLIVA 177 (239)
T ss_pred CCCCCHHHHHHHHHHCCCCCCEEEEE
T ss_conf 58877267886587467987322233
No 71
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.6e-11 Score=92.08 Aligned_cols=121 Identities=22% Similarity=0.418 Sum_probs=84.1
Q ss_pred CEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEEC------C-
Q ss_conf 28885698569999997319--81699521356778888653101121111221001232111530130012------4-
Q gi|254780872|r 69 RILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNM------E- 139 (254)
Q Consensus 69 ~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~------~- 139 (254)
+|||+|||+|.++..++..+ ++|+|+|+|+.++++|+.++...++ .++.....+-+....++||+|+|. .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~ 191 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLRGKFDLIVSNPPYIPAED 191 (280)
T ss_pred CEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCC-CCEEEEECCHHHCCCCCCCEEEECCCCCCCCC
T ss_conf 18996588319999999618988799998999999999999998289-74798740033346888577996899888852
Q ss_pred ------CHHC------------CCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCC
Q ss_conf ------3102------------6888899888875213332157743676602456415655431046789985712253
Q gi|254780872|r 140 ------VIEH------------VDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFI 201 (254)
Q Consensus 140 ------vleH------------v~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi 201 (254)
++.| +.-...++.++.+.|+|||.+++.. + |.
T Consensus 192 ~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~-------------------g--------~~--- 241 (280)
T COG2890 192 PELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI-------------------G--------LT--- 241 (280)
T ss_pred CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE-------------------C--------CC---
T ss_conf 11374213589799872487778999999998998728682899997-------------------6--------98---
Q ss_pred CHHHHHHHHHHCC-CEEEEE
Q ss_conf 8899999999869-838885
Q gi|254780872|r 202 KPTEMECFLAANK-VKIIDR 220 (254)
Q Consensus 202 ~p~el~~~l~~~g-~~~~~~ 220 (254)
..+.+.+++++.| |..+.+
T Consensus 242 q~~~v~~~~~~~~~~~~v~~ 261 (280)
T COG2890 242 QGEAVKALFEDTGFFEIVET 261 (280)
T ss_pred CHHHHHHHHHHCCCCEEEEE
T ss_conf 48999999997498447665
No 72
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.29 E-value=1.6e-11 Score=92.08 Aligned_cols=102 Identities=24% Similarity=0.333 Sum_probs=79.9
Q ss_pred HCCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHC-
Q ss_conf 162888569856999999731--98169952135677888865310112111122100123211153013001243102-
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEH- 143 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleH- 143 (254)
..+|||+|||.|.++..+++. ..+|+.+|.|..+++.|+..+..++++.++...+... ...++||.|+|.=-+|-
T Consensus 197 ~g~VLDlGCG~Gvi~~~la~~~p~~~v~l~Dv~a~Al~~ar~nl~~N~l~~~v~~sd~~~--~v~~~fD~IvsNPPFH~G 274 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLAQHSPKIRLTLCDVSAPAVEASRATLAANGLEGEVFASNVFS--EIKGRFDMIISNPPFHDG 274 (342)
T ss_pred CCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCC--CCCCCCCEEEECCCCCCC
T ss_conf 884786067817999999986999769999688999999999899809886899756445--655678989968852157
Q ss_pred C-CC---HHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 6-88---8899888875213332157743676
Q gi|254780872|r 144 V-DN---IPYFIKTCCSLLLSNGLMFISTINR 171 (254)
Q Consensus 144 v-~d---~~~~l~~~~~~LkpgG~liist~Nr 171 (254)
. .+ .+.+++...+.|+|||.+.+-. ||
T Consensus 275 ~~~~~~i~~~fi~~A~~~L~~gG~L~iVA-Nr 305 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVA-NA 305 (342)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEE-CC
T ss_conf 52658999999999998612498899998-18
No 73
>pfam05891 Hydroxy-O-Methy Putative hydroxyindole-O-methyltransferase. This family of proteins is a putative hydroxyindole-O-methyltransferase and by homology, is expected to catalyse the conversion of N-acetyl serotonin to melatonin. The protein is expressed in the tail neuron PVT and in uterine cells [worm-base].
Probab=99.29 E-value=8.7e-11 Score=87.55 Aligned_cols=139 Identities=18% Similarity=0.271 Sum_probs=100.6
Q ss_pred HCCEEEECCCHHHHHHH-HHHCCCCEEEECCHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCHHHHEECCCHHCC
Q ss_conf 16288856985699999-9731981699521356778888653101121-111221001232111530130012431026
Q gi|254780872|r 67 GLRILDLGCGGGLLSEP-MAQMGATVTGIDPSTKNIAIAKNHANMKNIN-IDYRVSCAEEIAETDEKFDIILNMEVIEHV 144 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~-la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~-i~~~~~~~~~l~~~~~~FD~V~~~~vleHv 144 (254)
..+.||.|+|-|+.++. |.+.-..|.-+|+.+..++.|+......... .+|.+...+++....++||+|.|-.++-|+
T Consensus 56 ~~~alDcGAGIGRVTk~lL~~~f~~VDlVEpv~~Fl~~ak~~l~~~~~~~~~~~~~gLQdf~P~~~~YD~IW~QW~~ghL 135 (217)
T pfam05891 56 HLVALDCGAGIGRVTKNLLLPLFSKVDLVEPVEDFLAKAKEYLAEEKKKVGNFFCVGLQDFTPEEGRYDLIWIQWCIGHL 135 (217)
T ss_pred CCEEEECCCCCCEECHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEEHHHHCCC
T ss_conf 32665426763611266788754813575444999999999874037976538973610168999817699805845218
Q ss_pred CC--HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCC-CHHHHHHHHHHCCCEEEEEE
Q ss_conf 88--8899888875213332157743676602456415655431046789985712253-88999999998698388855
Q gi|254780872|r 145 DN--IPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFI-KPTEMECFLAANKVKIIDRV 221 (254)
Q Consensus 145 ~d--~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi-~p~el~~~l~~~g~~~~~~~ 221 (254)
.| ...+|+.|...|+|||.+++-- |-+.. +.+ +++- |- .-. +-+.+.+++++|||+++...
T Consensus 136 tD~dlv~Fl~RCk~~L~~~G~IvvKE-N~~~~---------~~~---~D~~--Ds-SvTRs~~~~~~lF~~AGl~~v~~~ 199 (217)
T pfam05891 136 TDEDLVAFLKRCKSGLKPNGIIVIKE-NVTQE---------GVI---FDDV--DS-SVTRGEASFRKIFKKAGLKLVAEE 199 (217)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEE-CCCCC---------CCE---ECCC--CC-CCCCCHHHHHHHHHHCCCEEEEHH
T ss_conf 88999999999998478986499842-23677---------774---1565--45-431779999999998598566043
No 74
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.2e-10 Score=86.79 Aligned_cols=100 Identities=16% Similarity=0.273 Sum_probs=83.7
Q ss_pred HHHCCEEEECCCHHHHHHHHHHC-C--CCEEEECCHHHHHHHHHHHHHCCCC-C-CCCCCCCCCCCCCCCCCHHHHEECC
Q ss_conf 00162888569856999999731-9--8169952135677888865310112-1-1112210012321115301300124
Q gi|254780872|r 65 FKGLRILDLGCGGGLLSEPMAQM-G--ATVTGIDPSTKNIAIAKNHANMKNI-N-IDYRVSCAEEIAETDEKFDIILNME 139 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s~~la~~-g--~~V~giD~S~~~i~~Ak~~a~~~~~-~-i~~~~~~~~~l~~~~~~FD~V~~~~ 139 (254)
..|.+|||.|.|+|.++..|++. | .+|+..|.-+...+.|+++.+..++ + +.+..+|+.+....+ .||.|+.
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~L-- 169 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFL-- 169 (256)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC-CCCEEEE--
T ss_conf 9887899815680599999999648884599999527899999999998424561378705400024655-4677997--
Q ss_pred CHHCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 3102688889988887521333215774367
Q gi|254780872|r 140 VIEHVDNIPYFIKTCCSLLLSNGLMFISTIN 170 (254)
Q Consensus 140 vleHv~d~~~~l~~~~~~LkpgG~liist~N 170 (254)
-++||+.++..++++|||||.+++-.|+
T Consensus 170 ---Dmp~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 170 ---DLPDPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred ---CCCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf ---5898489999999871799679998397
No 75
>PRK06922 hypothetical protein; Provisional
Probab=99.25 E-value=1.4e-11 Score=92.51 Aligned_cols=106 Identities=22% Similarity=0.327 Sum_probs=84.1
Q ss_pred CCCHHHCCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCHHHHEE
Q ss_conf 58800162888569856999999731--981699521356778888653101121111221001232--11153013001
Q gi|254780872|r 62 THPFKGLRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA--ETDEKFDIILN 137 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~--~~~~~FD~V~~ 137 (254)
....+|..++|||.|+|.+...+... +++|+|||+|.+.|+..+++....+-+-+..++|+-+++ +..++-|.|+|
T Consensus 416 ldyi~G~~ivdiG~GGGVMldli~E~~p~~~i~GIDiS~NVIe~L~kkK~~e~ksW~V~~gDAL~l~d~f~~eSvdTiv~ 495 (679)
T PRK06922 416 LDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVY 495 (679)
T ss_pred EECCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHCCCCCCCEEEE
T ss_conf 20014767998669962148766765899861466660889999988777548984232143036154347566646874
Q ss_pred CCCHHCC----C------C---HHHHHHHHHHHCCCCCEEEEE
Q ss_conf 2431026----8------8---889988887521333215774
Q gi|254780872|r 138 MEVIEHV----D------N---IPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 138 ~~vleHv----~------d---~~~~l~~~~~~LkpgG~liis 167 (254)
+.++|-+ + + .++.|+..+++|||||+++|-
T Consensus 496 sSIlHElfSYie~dGkkfN~~vi~~~l~Saf~vLkpGGRiIIR 538 (679)
T PRK06922 496 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 538 (679)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 2778888863456671347999999999999872888649994
No 76
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.2e-11 Score=90.24 Aligned_cols=97 Identities=19% Similarity=0.251 Sum_probs=79.9
Q ss_pred HHHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCHHHHEECCCHHC
Q ss_conf 0016288856985699999973198169952135677888865310112-111122100123211153013001243102
Q gi|254780872|r 65 FKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAETDEKFDIILNMEVIEH 143 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~~~~~FD~V~~~~vleH 143 (254)
-.|.+|||||||+|+.+.-||+++.+|+.||..+...+.|+++.+..+. |+..+++|...=-.....||.|++......
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~ 150 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPE 150 (209)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCC
T ss_conf 99986888777830999999997484999997199999999999976987349997885568877798478999503577
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 688889988887521333215774
Q gi|254780872|r 144 VDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 144 v~d~~~~l~~~~~~LkpgG~liis 167 (254)
+|+ .+.+.|||||++++-
T Consensus 151 vP~------~Ll~QL~~gGrlv~P 168 (209)
T COG2518 151 VPE------ALLDQLKPGGRLVIP 168 (209)
T ss_pred CCH------HHHHHCCCCCEEEEE
T ss_conf 998------999850659889999
No 77
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.23 E-value=3.4e-11 Score=90.11 Aligned_cols=97 Identities=16% Similarity=0.255 Sum_probs=74.9
Q ss_pred HHCCEEEECCCHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHHCCCC-C-CCCCCCCCCCCCCCCCCHHHHEECCC
Q ss_conf 0162888569856999999731---98169952135677888865310112-1-11122100123211153013001243
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNI-N-IDYRVSCAEEIAETDEKFDIILNMEV 140 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~---g~~V~giD~S~~~i~~Ak~~a~~~~~-~-i~~~~~~~~~l~~~~~~FD~V~~~~v 140 (254)
.|.+|||||||+|+.+.-||++ ...|++||..+...+.|+.+....+. + +++.+++...-......||.|+....
T Consensus 72 ~~~~VLeIGtGsGY~tAlla~l~~~~g~V~siE~~~~L~~~A~~~l~~l~~~n~v~v~~gdg~~G~~~~apfD~Iiv~aa 151 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAA 151 (205)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEE
T ss_conf 99989997898519999999983747717999536999999999999859863306797655657743498048999850
Q ss_pred HHCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 1026888899888875213332157743
Q gi|254780872|r 141 IEHVDNIPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 141 leHv~d~~~~l~~~~~~LkpgG~liist 168 (254)
.+.+|. .+.+.|++||+|++-.
T Consensus 152 ~~~iP~------~l~~QL~~gGrLV~Pv 173 (205)
T PRK13944 152 ASTIPS------ALVRQLKDGGVLVIPV 173 (205)
T ss_pred CCCCCH------HHHHHCCCCCEEEEEE
T ss_conf 776899------9998548797999998
No 78
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.4e-10 Score=86.38 Aligned_cols=101 Identities=25% Similarity=0.376 Sum_probs=76.5
Q ss_pred HCCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCHHHHEECCCHHC
Q ss_conf 1628885698569999997319--816995213567788886531011211-1122100123211153013001243102
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNINI-DYRVSCAEEIAETDEKFDIILNMEVIEH 143 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~~~i-~~~~~~~~~l~~~~~~FD~V~~~~vleH 143 (254)
+.+|||+|||.|.++..+++.. .+++-+|.+..+|+.||.++..++++. .....+..+- ..++||.|+|.=-+|-
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~--v~~kfd~IisNPPfh~ 236 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP--VEGKFDLIISNPPFHA 236 (300)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCCCCCEEEECCCCCC
T ss_conf 99688707884299999998689872899826699999988769973987637998124466--5440068984888467
Q ss_pred CCC-----HHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 688-----889988887521333215774367
Q gi|254780872|r 144 VDN-----IPYFIKTCCSLLLSNGLMFISTIN 170 (254)
Q Consensus 144 v~d-----~~~~l~~~~~~LkpgG~liist~N 170 (254)
=.+ -+.++.+..+.|++||.|.|- .|
T Consensus 237 G~~v~~~~~~~ii~~A~~~L~~gGeL~iV-an 267 (300)
T COG2813 237 GKAVVHSLAQEIIAAAARHLKPGGELWIV-AN 267 (300)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEE-EC
T ss_conf 71016788999999999760459779999-75
No 79
>KOG1499 consensus
Probab=99.17 E-value=4.9e-11 Score=89.13 Aligned_cols=103 Identities=26% Similarity=0.328 Sum_probs=78.0
Q ss_pred CHHHCCEEEECCCHHHHHHHHHHCCC-CEEEECCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCHHHHEECCC
Q ss_conf 80016288856985699999973198-1699521356778888653101121--11122100123211153013001243
Q gi|254780872|r 64 PFKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNIN--IDYRVSCAEEIAETDEKFDIILNMEV 140 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~~s~~la~~g~-~V~giD~S~~~i~~Ak~~a~~~~~~--i~~~~~~~~~l~~~~~~FD~V~~~~v 140 (254)
-++++.|||||||||.+|..-|+.|+ .|.|||.|.-+ +.|++-.+.++.. |+...+.+|++..+-++.|+|++=.+
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHCCCEEEEEECHHHH-HHHHHHHHHCCCCCEEEEEECCEEEEECCCCCEEEEEEHHH
T ss_conf 30797899757881288999887375339999626899-99999998568660599950305787647554029963012
Q ss_pred HH---CCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 10---2688889988887521333215774
Q gi|254780872|r 141 IE---HVDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 141 le---Hv~d~~~~l~~~~~~LkpgG~liis 167 (254)
=. +=.-...+|-.=-+.|+|||.++=+
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499 137 GYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEECCC
T ss_conf 478777656664553333004779557666
No 80
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.14 E-value=7.4e-11 Score=87.99 Aligned_cols=135 Identities=22% Similarity=0.233 Sum_probs=99.5
Q ss_pred HHHCCEEEECCCHHHHHHHHHHCCC-CEEEECCHHHHHHHHHHHHHCCCCC---CCCCCCCCCCCCC----CCCCHHHHE
Q ss_conf 0016288856985699999973198-1699521356778888653101121---1112210012321----115301300
Q gi|254780872|r 65 FKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNIN---IDYRVSCAEEIAE----TDEKFDIIL 136 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s~~la~~g~-~V~giD~S~~~i~~Ak~~a~~~~~~---i~~~~~~~~~l~~----~~~~FD~V~ 136 (254)
.+|++|||+=|=||.+|.+.|..|| +||+||+|..+|+.|+++++.+++. +.++++|+-+... .+.+||+|+
T Consensus 216 ~~GkrvLNlFsYTGgfsv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCCCEEEEECCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 16876788646676999999866997148982657899999999986299710105672239999999985599556899
Q ss_pred EC---------CCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHH
Q ss_conf 12---------431026888899888875213332157743676602456415655431046789985712253889999
Q gi|254780872|r 137 NM---------EVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEME 207 (254)
Q Consensus 137 ~~---------~vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~ 207 (254)
.- +...=..|...++..+.++|+|||.++++| |... ++ -+.|+ +.+.
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~lL~pgG~l~~~s-~~~~----------------~~-----~~~f~--~~i~ 351 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS-CSRH----------------FS-----SDLFL--EIIA 351 (393)
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEE-CCCC----------------CC-----HHHHH--HHHH
T ss_conf 78810035821005389899999999999707996899993-6776----------------69-----89999--9999
Q ss_pred HHHHHCCCEEEEEEEE
Q ss_conf 9999869838885505
Q gi|254780872|r 208 CFLAANKVKIIDRVGV 223 (254)
Q Consensus 208 ~~l~~~g~~~~~~~g~ 223 (254)
.-+...|.....+.+.
T Consensus 352 ~a~~~~~~~~~~~~~~ 367 (393)
T COG1092 352 RAAAAAGRRAQEIEGE 367 (393)
T ss_pred HHHHHCCCCEEEEECC
T ss_conf 9998648757996146
No 81
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.14 E-value=4.4e-10 Score=83.22 Aligned_cols=104 Identities=22% Similarity=0.268 Sum_probs=84.4
Q ss_pred CCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCC---CCCCCHHHHEECCCH
Q ss_conf 628885698569999997319--8169952135677888865310112-1111221001232---111530130012431
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIA---ETDEKFDIILNMEVI 141 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~---~~~~~FD~V~~~~vl 141 (254)
.-+||||||.|.+...+|+.. ..++|||+....+..|-.++.+.++ |+...+.++..+. ..+++.|-|+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i---- 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI---- 125 (227)
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEEEE----
T ss_conf 6699968889878999998789877899997348999999999982998469980779999973589885657999----
Q ss_pred HCCCCH-------------HHHHHHHHHHCCCCCEEEEECCCCCCHHH
Q ss_conf 026888-------------89988887521333215774367660245
Q gi|254780872|r 142 EHVDNI-------------PYFIKTCCSLLLSNGLMFISTINRNLKAM 176 (254)
Q Consensus 142 eHv~d~-------------~~~l~~~~~~LkpgG~liist~Nr~~~s~ 176 (254)
+.||| ..+++.+.++|||||.+.+.|=+.+..-|
T Consensus 126 -~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 126 -NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred -ECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHH
T ss_conf -79999987664332147889999999972689789997267999999
No 82
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.13 E-value=1.6e-10 Score=85.98 Aligned_cols=96 Identities=22% Similarity=0.310 Sum_probs=77.1
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCC---EEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCHHHHEECCCH
Q ss_conf 0162888569856999999731981---69952135677888865310112-1111221001232111530130012431
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGAT---VTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAETDEKFDIILNMEVI 141 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~---V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~~~~~FD~V~~~~vl 141 (254)
.|.+|||||||+|+-+.-|+++..+ |+.||..+...+.|+.+....+. |+.+.++|...=-.....||.|+.....
T Consensus 75 pg~rVLEIGTGSGYqAAlLA~Lvg~~G~V~TIE~~~~L~~~Ar~~L~~lG~~NV~vv~GDG~~G~pe~APYD~IIVTAaa 154 (317)
T PRK13943 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGV 154 (317)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEEECC
T ss_conf 99868996577438999999984878759999867999999999999779986499979988888667997789998527
Q ss_pred HCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 02688889988887521333215774
Q gi|254780872|r 142 EHVDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 142 eHv~d~~~~l~~~~~~LkpgG~liis 167 (254)
+++|.+ +.+.|||||++++-
T Consensus 155 ~~IP~a------LldQLk~GGRLViP 174 (317)
T PRK13943 155 DEVPET------WFTQLKEGGRVIVP 174 (317)
T ss_pred CCCCHH------HHHHCCCCCEEEEE
T ss_conf 648999------99961859699998
No 83
>pfam10294 Methyltransf_16 Putative methyltransferase.
Probab=99.12 E-value=2.8e-10 Score=84.42 Aligned_cols=108 Identities=23% Similarity=0.350 Sum_probs=77.6
Q ss_pred CHHHCCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCCC---CCCCCCCC----CCCCCCCCCCHHH
Q ss_conf 8001628885698569999997319--8169952135677888865310112---11112210----0123211153013
Q gi|254780872|r 64 PFKGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNI---NIDYRVSC----AEEIAETDEKFDI 134 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~~---~i~~~~~~----~~~l~~~~~~FD~ 134 (254)
.++|++|||+|||+|+.+..++..+ ++|+..|. +..++..+.+...+.. ++.+...+ ........+.||+
T Consensus 42 ~~~~k~VLELGaG~GL~Gi~~a~~~~~~~V~lTD~-~~~l~~l~~Nv~~N~~~~~~v~~~~LdWg~~~~~~~~~~~~fD~ 120 (171)
T pfam10294 42 NLSGKNVLELGSGCGLVGIAVALLLPGASVTITDL-EEAIELMKKNIELNKALSSKVTAKVLDWGEELPDDVFDPHPVDL 120 (171)
T ss_pred HCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCC-HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHCCCCCCCE
T ss_conf 40687678705665758999998579858996383-78999999999970578996699981108988433314677678
Q ss_pred HEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 00124310268888998888752133321577436766
Q gi|254780872|r 135 ILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRN 172 (254)
Q Consensus 135 V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~ 172 (254)
|++.+++.+......+++.+..+|+|+|.++++..-|+
T Consensus 121 Il~sD~iY~~~~~~~L~~ti~~ll~~~g~~lla~~~R~ 158 (171)
T pfam10294 121 ILAADCVYNEDAFPLLVKTLKDLLGKETVILVAYKKRR 158 (171)
T ss_pred EEEECEEECHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 99712133577799999999999589989999978206
No 84
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.08 E-value=4.9e-10 Score=82.89 Aligned_cols=100 Identities=21% Similarity=0.252 Sum_probs=78.5
Q ss_pred CCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCC---CCCCCHHHHEECCCH
Q ss_conf 62888569856999999731--98169952135677888865310112-1111221001232---111530130012431
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIA---ETDEKFDIILNMEVI 141 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~---~~~~~FD~V~~~~vl 141 (254)
.-+||||||.|.++..+|.. ...++|||+....+..+-.++...++ |+.+..+++..+. ..++++|.|..
T Consensus 56 p~~lEIGfG~G~~l~~~A~~~P~~~fIGiE~~~~gv~~~~~~~~~~~l~Ni~i~~~da~~~l~~~~~~~s~~~i~i---- 131 (229)
T PRK00121 56 PIHLEIGFGRGEFLVEMAKANPDINFIGIEIHEPGVAKALKKIEEAGLKNLRLLCGDAVEVLEHFLPDGSLDRIYL---- 131 (229)
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCEEEE----
T ss_conf 4399961589699999998688886899996169999999999982998389883478999997146454140467----
Q ss_pred HCCCCH-------------HHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 026888-------------8998888752133321577436766
Q gi|254780872|r 142 EHVDNI-------------PYFIKTCCSLLLSNGLMFISTINRN 172 (254)
Q Consensus 142 eHv~d~-------------~~~l~~~~~~LkpgG~liist~Nr~ 172 (254)
+.||| ..+|..++++|+|||.+.++|=+..
T Consensus 132 -~FPDPWpKkrH~KRRli~~~fl~~~~~~Lk~~G~i~~~TD~~~ 174 (229)
T PRK00121 132 -NFPDPWPKKRHHKRRLVQPEFLELYARVLKPGGEFHFATDWEE 174 (229)
T ss_pred -CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHH
T ss_conf -1799997632024012899999999985799988999818799
No 85
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.06 E-value=8.8e-10 Score=81.31 Aligned_cols=101 Identities=18% Similarity=0.260 Sum_probs=71.0
Q ss_pred HCCEEEECCCHHH----HHHHHHHCC-------CCEEEECCHHHHHHHHHHHHHC----CC-------------------
Q ss_conf 1628885698569----999997319-------8169952135677888865310----11-------------------
Q gi|254780872|r 67 GLRILDLGCGGGL----LSEPMAQMG-------ATVTGIDPSTKNIAIAKNHANM----KN------------------- 112 (254)
Q Consensus 67 g~~VLDiGCG~G~----~s~~la~~g-------~~V~giD~S~~~i~~Ak~~a~~----~~------------------- 112 (254)
..+|+-+||.||. ++..+.+.+ .+|+|.|+|+.+|+.|+.-.-. .+
T Consensus 100 ~lrIWsagCStGEE~YSlAm~l~e~~~~~~~~~~~I~aTDIs~~~L~~Ar~G~Y~~~~~~~~~~~~~~kyF~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCCEEEE
T ss_conf 74899777888820899999999974334898569999839999999998689898998469999999880656988999
Q ss_pred -----CCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCC--HHHHHHHHHHHCCCCCEEEEE
Q ss_conf -----2111122100123211153013001243102688--889988887521333215774
Q gi|254780872|r 113 -----INIDYRVSCAEEIAETDEKFDIILNMEVIEHVDN--IPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 113 -----~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d--~~~~l~~~~~~LkpgG~liis 167 (254)
-.|.|.+.++-+-....+.||+|+|-+||-+++. ...+++.+++.|+|||+|++.
T Consensus 180 ~~~lr~~v~F~~~NL~~~~~~~~~fDlI~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 241 (264)
T smart00138 180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred CHHHHCCCCEECCCCCCCCCCCCCCEEEEECCCEEECCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 88998509183278999987778841999763235459999999999999983899399982
No 86
>pfam07942 N2227 N2227-like protein. This family features sequences that are similar to a region of hypothetical yeast gene product N2227. This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions.
Probab=99.06 E-value=2.3e-08 Score=72.53 Aligned_cols=179 Identities=20% Similarity=0.265 Sum_probs=110.0
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCCCEEEECCH
Q ss_conf 99999887468888712677517565999999988651876444588001628885698569999997319816995213
Q gi|254780872|r 18 QFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPS 97 (254)
Q Consensus 18 ~F~~~a~~WwD~~g~~~~Lh~~N~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S 97 (254)
-..+++-+|.+ .|...- ++ -...|.+.+.+.+....... +..+||==|||.|+++..+|++|+.|.|.|.|
T Consensus 18 tL~q~~RDWS~-eG~~ER----~~-~~~pI~~~L~~~~p~~~~~~---~~~~VLVPGaGLGRLa~Eia~~G~~~~gNE~S 88 (268)
T pfam07942 18 TLRQIVRDWSA-EGQVER----DP-LYKPIIEELNRLFPSRSHDR---SKIRILVPGAGLGRLAYELATLGYQVQGNEFS 88 (268)
T ss_pred HHHHHHCCCCH-HHHHHH----HH-HHHHHHHHHHHHCCCCCCCC---CCCEEEECCCCCHHHHHHHHHCCCEEEEECCC
T ss_conf 99877640643-308999----98-89999999998679875677---78289976988037899987256468872121
Q ss_pred HHHHHHHHH---HHHC-CCC-------------------------------------CCCCCCCCCCCC-CCCCCCHHHH
Q ss_conf 567788886---5310-112-------------------------------------111122100123-2111530130
Q gi|254780872|r 98 TKNIAIAKN---HANM-KNI-------------------------------------NIDYRVSCAEEI-AETDEKFDII 135 (254)
Q Consensus 98 ~~~i~~Ak~---~a~~-~~~-------------------------------------~i~~~~~~~~~l-~~~~~~FD~V 135 (254)
--|+-..+- +... ... ++....++..++ +...++||+|
T Consensus 89 ~~Mllas~fiLn~~~~~~~~~i~Pfi~~~Sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~d~V 168 (268)
T pfam07942 89 YFMLLCSNFILNYCKEENQITIYPFIHSFSNQLTRDDQLRPVQIPDVHPLSELGPRGNFSMCAGDFLEVYGEDANSYDVV 168 (268)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHCEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEE
T ss_conf 99999999998525877828996325366687898897555765886810147999841487003589838887822689
Q ss_pred EECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCC
Q ss_conf 01243102688889988887521333215774367660245641565543104678998571225388999999998698
Q gi|254780872|r 136 LNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKV 215 (254)
Q Consensus 136 ~~~~vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~ 215 (254)
++.-.|--.+|.-..|+.|+++|||||+-| |--++-|-.. |.... -.--++-+||..+.++.||
T Consensus 169 vT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WI----N~GPLlyh~~-----------~~~~~-~siELs~eEi~~l~~~~GF 232 (268)
T pfam07942 169 VTCFFIDTAHNVLEYIDTIEKILKPGGHWI----NLGPLLYHFE-----------PLPDE-MSIELSLEDIKRLATKRGF 232 (268)
T ss_pred EEEEEEECHHHHHHHHHHHHHHHCCCCEEE----ECCCCCCCCC-----------CCCCC-CCEECCHHHHHHHHHHCCC
T ss_conf 999876646889999999999836698899----6467012457-----------77887-6000689999999985697
Q ss_pred EEEEEE
Q ss_conf 388855
Q gi|254780872|r 216 KIIDRV 221 (254)
Q Consensus 216 ~~~~~~ 221 (254)
+++.-.
T Consensus 233 ~~~~~~ 238 (268)
T pfam07942 233 KDEKEE 238 (268)
T ss_pred EEEEEE
T ss_conf 799888
No 87
>pfam05148 Methyltransf_8 Hypothetical methyltransferase. This family consists of several uncharacterized eukaryotic proteins which are related to methyltransferases pfam01209.
Probab=99.06 E-value=2.6e-09 Score=78.45 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=82.8
Q ss_pred HCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCC
Q ss_conf 16288856985699999973198169952135677888865310112111122100123211153013001243102688
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVDN 146 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d 146 (254)
+..|.|+|||.+.++..+. .+.+|...|+-. .+.. ....++.++|..+++.|++++.-.|- -.|
T Consensus 68 ~~vIaD~GCGdA~lA~~~~-~~~kV~SfDLva------------~n~~--Vt~cDi~~~PL~d~svDvaVfCLSLM-GTN 131 (214)
T pfam05148 68 NGVIADLGCGEARIAFRKR-EFENVHSFDLVA------------VNKR--VIPCDMARVPLEDESVDVAVFCLSLM-GTN 131 (214)
T ss_pred CEEEEECCCCHHHHHHHCC-CCCEEEEEECCC------------CCCC--CCCCCCCCCCCCCCCEEEEEEEHHHH-CCC
T ss_conf 7189975886579998646-787388513256------------8988--35135336878877263687758762-887
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 88998888752133321577436766024564156554310467899857122538899999999869838885
Q gi|254780872|r 147 IPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDR 220 (254)
Q Consensus 147 ~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~ 220 (254)
...+|.|++|+|||||.|.|+-+. .+|-.+.+..+.++..||+....
T Consensus 132 ~~~fi~EA~RvLk~~G~L~IAEV~---------------------------SRf~~~~~Fv~~~~~~GF~~~~~ 178 (214)
T pfam05148 132 IADFLKEANRILKNGGLLKIAEVR---------------------------SRFPSVGLFERAFTKLGFEVEHV 178 (214)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEE---------------------------CCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 799999987603108789999974---------------------------01689899999999759767753
No 88
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=2.7e-10 Score=84.47 Aligned_cols=124 Identities=21% Similarity=0.288 Sum_probs=86.1
Q ss_pred CCHHHCCEEEECCCHHHHHHHHHHCC-CCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEEC---
Q ss_conf 88001628885698569999997319-81699521356778888653101121111221001232111530130012---
Q gi|254780872|r 63 HPFKGLRILDLGCGGGLLSEPMAQMG-ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNM--- 138 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~~s~~la~~g-~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~--- 138 (254)
.+++|+.|+|+|||||+++...+-+| ..|+|+|+.++++++|+.++.+...+++|..+++.++ ...||.|+..
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNPPF 118 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMNPPF 118 (198)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCHHHC---CCCCCEEEECCCC
T ss_conf 8847888888278847889999862971799993698999999988886088469998210114---7766669978997
Q ss_pred C-CHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEE
Q ss_conf 4-310268888998888752133321577436766024564156554310467899857122538899999999869838
Q gi|254780872|r 139 E-VIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKI 217 (254)
Q Consensus 139 ~-vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~ 217 (254)
+ ...| +|.. |+....+.- ..+.|.-|. . +-+-+.+..+.+|+.+
T Consensus 119 G~~~rh-aDr~-Fl~~Ale~s----~vVYsiH~a--------------------------~---~~~f~~~~~~~~G~~v 163 (198)
T COG2263 119 GSQRRH-ADRP-FLLKALEIS----DVVYSIHKA--------------------------G---SRDFVEKFAADLGGTV 163 (198)
T ss_pred CCCCCC-CCHH-HHHHHHHHH----HEEEEEECC--------------------------C---CHHHHHHHHHHCCCEE
T ss_conf 322136-8889-999999740----147874016--------------------------6---0799999988549708
Q ss_pred EEEEEEE
Q ss_conf 8855057
Q gi|254780872|r 218 IDRVGVV 224 (254)
Q Consensus 218 ~~~~g~~ 224 (254)
.-+.-..
T Consensus 164 ~~~~~~~ 170 (198)
T COG2263 164 THIERAR 170 (198)
T ss_pred EEEEEEE
T ss_conf 9999999
No 89
>KOG1269 consensus
Probab=99.03 E-value=2.7e-10 Score=84.46 Aligned_cols=106 Identities=23% Similarity=0.315 Sum_probs=87.7
Q ss_pred HHCCEEEECCCHHHHHHHHHHC-CCCEEEECCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCHHHHEECCCHH
Q ss_conf 0162888569856999999731-981699521356778888653101121--1112210012321115301300124310
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM-GATVTGIDPSTKNIAIAKNHANMKNIN--IDYRVSCAEEIAETDEKFDIILNMEVIE 142 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~-g~~V~giD~S~~~i~~Ak~~a~~~~~~--i~~~~~~~~~l~~~~~~FD~V~~~~vle 142 (254)
.+.+++|+|||-|-.+..++.. +.+++|+|.++..+..+...+....++ -++..+++-+.++++..||.|.++++.+
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~ 189 (364)
T KOG1269 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC 189 (364)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEHHHHHCCCCCCCCCCCEEEEEECC
T ss_conf 54111224767675167788862577517876799999988777888764202352255514887746667489876124
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 26888899888875213332157743676
Q gi|254780872|r 143 HVDNIPYFIKTCCSLLLSNGLMFISTINR 171 (254)
Q Consensus 143 Hv~d~~~~l~~~~~~LkpgG~liist~Nr 171 (254)
|.+++..++++++|++||||+.+.....+
T Consensus 190 ~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269 190 HAPDLEKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred CCCCHHHHHHHHHCCCCCCCEEEEHHHHH
T ss_conf 47869999998850367771688488887
No 90
>pfam01234 NNMT_PNMT_TEMT NNMT/PNMT/TEMT family.
Probab=99.03 E-value=1.4e-08 Score=73.87 Aligned_cols=180 Identities=11% Similarity=0.154 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHH-HHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC---------
Q ss_conf 99999998865187644458800162888569856999-99973198169952135677888865310112---------
Q gi|254780872|r 44 IKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLS-EPMAQMGATVTGIDPSTKNIAIAKNHANMKNI--------- 113 (254)
Q Consensus 44 ~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s-~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~--------- 113 (254)
+.|....+.+.|... ..+|.++||||||.-+.. ..+++.-.+++..|.++...+.-++-.+...-
T Consensus 39 ~~f~l~~l~~~f~~g-----~~kg~~LiDvG~GPtiy~~lsA~~~f~~I~lsDy~~~Nr~el~kWl~~ep~afDWs~~~~ 113 (261)
T pfam01234 39 VLFFLPNLLQTFGPG-----GVKGDTLIDIGSGPTIYQLLSACEVFKEIHLSDYLPQNRDELIKWLKKEPGAFDWSPVLK 113 (261)
T ss_pred HHHHHHHHHHHHCCC-----CCCCCEEEEECCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 378899999983778-----746668998478945888876776507178602557679999999706998666619999
Q ss_pred ---------------------CCC-CCCCCCCC---C--CCCCCCHHHHEECCCHHCC-CCH---HHHHHHHHHHCCCCC
Q ss_conf ---------------------111-12210012---3--2111530130012431026-888---899888875213332
Q gi|254780872|r 114 ---------------------NID-YRVSCAEE---I--AETDEKFDIILNMEVIEHV-DNI---PYFIKTCCSLLLSNG 162 (254)
Q Consensus 114 ---------------------~i~-~~~~~~~~---l--~~~~~~FD~V~~~~vleHv-~d~---~~~l~~~~~~LkpgG 162 (254)
.|. ....|+.+ + +..-..||+|+++-.||-. +|+ ..+++++..+|||||
T Consensus 114 ~v~~lEG~~~~~~e~ee~lR~~Ik~Vl~cDV~~~~pl~~~~~lp~~D~v~S~~cLE~ac~d~~~Y~~av~ni~~LLkpGG 193 (261)
T pfam01234 114 HICELEGDRECWQEKEEKLRALVKRVLKCDVHQSPPLGAGVQLPPADCVVTIFCLEYACPDLEEYCRALRNLASLLKPGG 193 (261)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99862267641578889999886448876556888888866678855884762255661999999999999986478884
Q ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHCCCCCCCCCCH-HHCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEECCCCCC
Q ss_conf 15774-367660245641565543104678998571-2253889999999986983888550576677775786478864
Q gi|254780872|r 163 LMFIS-TINRNLKAMLLAIIGAEYLLQWLPKGTHQY-DKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNKWQLSAKNMD 240 (254)
Q Consensus 163 ~liis-t~Nr~~~s~~~~i~~ae~il~~~P~gtH~~-~~Fi~p~el~~~l~~~g~~~~~~~g~~~~p~~~~w~~~~~~~~ 240 (254)
.|++. .+|-+. |. +| .|.+ .--++.+.+.+.++++||.+++.. ..|-.....++ |.+
T Consensus 194 ~Lil~gvl~~t~--Y~---vG-----------~~~F~~l~l~ee~v~~Al~~aG~~i~~~~---~~~~~~~~~~~--d~~ 252 (261)
T pfam01234 194 HLVLGGVLEESW--YM---FG-----------EKKFSCLYLSKEVVEDALVDAGLDVEALQ---IMPQSYSYKVA--DHD 252 (261)
T ss_pred EEEEEEECCCCE--EE---EC-----------CEECCEEECCHHHHHHHHHHCCCEEEEEE---EECCCCCCCCC--CCC
T ss_conf 699998617734--88---78-----------98602252289999999997797789978---62243577644--667
Q ss_pred EEEEEEEEC
Q ss_conf 517999975
Q gi|254780872|r 241 VNYMVLGHL 249 (254)
Q Consensus 241 vnY~~~~~k 249 (254)
--++++|+|
T Consensus 253 ~~f~l~arK 261 (261)
T pfam01234 253 GVFFLVARK 261 (261)
T ss_pred CEEEEEEEC
T ss_conf 449999829
No 91
>pfam02390 Methyltransf_4 Putative methyltransferase. This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity.
Probab=99.02 E-value=1.1e-09 Score=80.76 Aligned_cols=106 Identities=20% Similarity=0.286 Sum_probs=78.6
Q ss_pred CEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHC-CC-CCCCCCCCCCCCCC---CCCCCHHHHEECCCH
Q ss_conf 2888569856999999731--98169952135677888865310-11-21111221001232---111530130012431
Q gi|254780872|r 69 RILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANM-KN-INIDYRVSCAEEIA---ETDEKFDIILNMEVI 141 (254)
Q Consensus 69 ~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~-~~-~~i~~~~~~~~~l~---~~~~~FD~V~~~~vl 141 (254)
-+||||||.|.+...+|.. ...++|||+...-+..|..++.+ .+ .|+.+.++++..+. ..++++|.|+.
T Consensus 23 i~lEIG~G~G~~l~~~A~~~p~~n~iGiEi~~~~v~~~~~k~~~~~~l~Ni~~~~~da~~~l~~~~~~~~l~~i~i---- 98 (199)
T pfam02390 23 LFLEIGCGMGDFLVAMAKKNPDKLFIGIEIRVPGVDKALKKIIALRGLQNLRILCGDAMKLLPNLFPDGSLQKIFI---- 98 (199)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCEEEEEE----
T ss_conf 4999736888999999997899878999950599999999999845777378760479999997579886427999----
Q ss_pred HCCCCH-------------HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 026888-------------89988887521333215774367660245641
Q gi|254780872|r 142 EHVDNI-------------PYFIKTCCSLLLSNGLMFISTINRNLKAMLLA 179 (254)
Q Consensus 142 eHv~d~-------------~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~ 179 (254)
+.||| ..+++.++++|+|||.+.+.|=+.+...+...
T Consensus 99 -~FPDPWpKkrH~KRRli~~~fl~~~~~~Lk~gG~l~~~TD~~~y~~~~~e 148 (199)
T pfam02390 99 -NFPDPWPKKRHHKRRLLQPEFLKEYARVLKPGGVLHLATDVEEYFEWMLE 148 (199)
T ss_pred -ECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH
T ss_conf -67999876442440007999999999963889899998289999999999
No 92
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA; InterPro: IPR001566 This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA .; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing.
Probab=99.01 E-value=6.6e-09 Score=75.88 Aligned_cols=116 Identities=19% Similarity=0.414 Sum_probs=93.9
Q ss_pred HHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-CC
Q ss_conf 75175659999999886518764445880016288856985699999973198169952135677888865310112-11
Q gi|254780872|r 37 HQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NI 115 (254)
Q Consensus 37 h~~N~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~-~i 115 (254)
.+.||.--.-+.+++.+.+..... -+|||.=||-|.++.+||+...+|.|||.-+++|+-|+++|+.++. |+
T Consensus 272 ~QVN~~~~~~l~~~a~~~l~Lqg~-------e~V~DayCG~GtftLpLA~qak~v~G~E~v~e~v~~a~~NAe~Ng~~N~ 344 (434)
T TIGR00479 272 FQVNSEQTEKLVDRALEALELQGE-------EKVVDAYCGVGTFTLPLAKQAKSVVGVEVVPESVEDAKRNAELNGIANV 344 (434)
T ss_pred EECCHHHHHHHHHHHHHHHHCCCC-------CEEEEEECCCCCCHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCH
T ss_conf 201876779999999999715986-------5578631575520044440121888871437678999888886035320
Q ss_pred CCCCCCCCC-CCC---CCCCHHHHEECCCHHCCCCH------HHHHHHHHHHCCCCCEEEEEC
Q ss_conf 112210012-321---11530130012431026888------899888875213332157743
Q gi|254780872|r 116 DYRVSCAEE-IAE---TDEKFDIILNMEVIEHVDNI------PYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 116 ~~~~~~~~~-l~~---~~~~FD~V~~~~vleHv~d~------~~~l~~~~~~LkpgG~liist 168 (254)
+|..+++|. +|. ++..||.|+. || ..+|++|.+ |||-=.+++|-
T Consensus 345 ~F~~g~~E~~~p~~~~e~~~~D~~ll--------DPPR~GCa~~~L~~I~~-~kP~rivYVSC 398 (434)
T TIGR00479 345 EFLAGTLETVLPKQPWEGISPDVVLL--------DPPRKGCAAEVLRTIIK-LKPKRIVYVSC 398 (434)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCEEEE--------CCCCCCCHHHHHHHHHH-CCCEEEEEEEC
T ss_conf 13331232110144222677898888--------88898745899998862-07705999844
No 93
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed
Probab=98.99 E-value=1.2e-08 Score=74.29 Aligned_cols=123 Identities=20% Similarity=0.264 Sum_probs=87.1
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCC-C---CCCCCHHHHEECCC
Q ss_conf 016288856985699999973198169952135677888865310112-111122100123-2---11153013001243
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEI-A---ETDEKFDIILNMEV 140 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l-~---~~~~~FD~V~~~~v 140 (254)
.+.+|||+=||.|.++..||+.+.+|+|||.++.+++-|+.+|+.+++ |++|.++++++. . ...+.||+|+.
T Consensus 294 ~~~~VlDLYcGvGtfsl~LA~~~~~V~gvE~~~~av~~A~~Na~~n~i~n~~f~~~d~~~~l~~~~~~~~~~D~vi~--- 370 (440)
T PRK13168 294 PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVPAMVERARENARRNGLDNVTFYHANLFEDFTDQPWAKGGFDKVLL--- 370 (440)
T ss_pred CCCEEEEEECCCCCCCHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEE---
T ss_conf 89889986238562111135306768876057999999999999749998789974645663557863799998999---
Q ss_pred HHCCCCH-----HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCC
Q ss_conf 1026888-----89988887521333215774367660245641565543104678998571225388999999998698
Q gi|254780872|r 141 IEHVDNI-----PYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKV 215 (254)
Q Consensus 141 leHv~d~-----~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~ 215 (254)
|| ..+++.+.+ ++|.-++++|. |+.+. -.+|.. |.++|+
T Consensus 371 -----DPPR~G~~~~i~~l~~-~~p~~IvYVSC---nPaTl--------------------------ARDl~~-L~~~GY 414 (440)
T PRK13168 371 -----DPPRAGAFEVMQALAK-LKPKRIVYVSC---NPATL--------------------------ARDAGV-LVEAGY 414 (440)
T ss_pred -----CCCCCCHHHHHHHHHH-CCCCEEEEECC---CHHHH--------------------------HHHHHH-HHHCCC
T ss_conf -----9885278999999984-79897999938---98999--------------------------999999-987894
Q ss_pred EEEEEEEEEECC
Q ss_conf 388855057667
Q gi|254780872|r 216 KIIDRVGVVYNV 227 (254)
Q Consensus 216 ~~~~~~g~~~~p 227 (254)
++.++.++..=|
T Consensus 415 ~l~~i~~vDmFP 426 (440)
T PRK13168 415 RLKRAGVLDMFP 426 (440)
T ss_pred EEEEEEEEECCC
T ss_conf 895999960699
No 94
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=98.99 E-value=7.1e-10 Score=81.92 Aligned_cols=104 Identities=23% Similarity=0.318 Sum_probs=77.9
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCCE--EEECCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCHHHHEECCCH
Q ss_conf 01628885698569999997319816--99521356778888653101121--111221001232111530130012431
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGATV--TGIDPSTKNIAIAKNHANMKNIN--IDYRVSCAEEIAETDEKFDIILNMEVI 141 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~V--~giD~S~~~i~~Ak~~a~~~~~~--i~~~~~~~~~l~~~~~~FD~V~~~~vl 141 (254)
.|..|||..||+|.++...+..+.++ +|+|+++.|++.|+.+++..++. |.+.++++.+++..+++||+|+|.--.
T Consensus 28 ~g~~vlDP~CGSGtilIEAa~~~~~~~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~~~D~~~l~~~~~~~d~Iv~nPPY 107 (171)
T pfam01170 28 PGDPLLDPFCGSGTILIEAALMGANVALYGSDIDRRMVRGARINAEAAGVGDKIEFVQADAADLPLLNGSVDTIVTDPPY 107 (171)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCEEEEECCCC
T ss_conf 99978868998789999999961358953675879999999999998289984699976665387987883189988982
Q ss_pred -HCC-------CCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf -026-------88889988887521333215774367
Q gi|254780872|r 142 -EHV-------DNIPYFIKTCCSLLLSNGLMFISTIN 170 (254)
Q Consensus 142 -eHv-------~d~~~~l~~~~~~LkpgG~liist~N 170 (254)
+.+ .-...+++++.++++ |...++.|-|
T Consensus 108 G~r~~~~~~~~~ly~~~~~~~~~~~~-g~~~~i~~~~ 143 (171)
T pfam01170 108 GIRIGSKGALEKLYPAFLDEAKRVLR-GRLVFATPEK 143 (171)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCC-CCEEEEEECC
T ss_conf 01136545699999999999998689-9789999686
No 95
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.99 E-value=1.6e-08 Score=73.46 Aligned_cols=121 Identities=21% Similarity=0.223 Sum_probs=87.4
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCC-CCCCHHHHEECCCHHC
Q ss_conf 016288856985699999973198169952135677888865310112-11112210012321-1153013001243102
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAE-TDEKFDIILNMEVIEH 143 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~-~~~~FD~V~~~~vleH 143 (254)
.+.+|||+=||.|.++.++|+.+.+|+|||.++.+++-|+.+|+.+++ |++|..+++++... ..+.+|+|+.
T Consensus 233 ~~~~vlDlycG~G~~sl~lA~~~~~V~gvE~~~~av~~A~~na~~ngi~nv~f~~~d~~~~~~~~~~~~d~vvv------ 306 (375)
T PRK03522 233 PPKSMWDLFCGVGGFGLHCATPDMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPELVLV------ 306 (375)
T ss_pred CCCEEEEECCCCCHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEE------
T ss_conf 89789996578538889876417889999845999999999999869987699973778887634568978998------
Q ss_pred CCCHH------HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEE
Q ss_conf 68888------998888752133321577436766024564156554310467899857122538899999999869838
Q gi|254780872|r 144 VDNIP------YFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKI 217 (254)
Q Consensus 144 v~d~~------~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~ 217 (254)
||+ .+++.+. -++|.-++++|. |+.+. -.+|..+ .|+++
T Consensus 307 --DPPR~Gl~~~~~~~l~-~~~p~~IvYVSC---nP~Tl--------------------------aRDl~~L---~gy~l 351 (375)
T PRK03522 307 --NPPRRGIGKPLCDYLS-QMAPRFILYSSC---NAQTM--------------------------AKDLAHL---PGYRI 351 (375)
T ss_pred --CCCCCCCHHHHHHHHH-HCCCCEEEEEEC---CHHHH--------------------------HHHHHHH---CCCEE
T ss_conf --9997775199999998-659996999907---98999--------------------------9998884---39768
Q ss_pred EEEEEEEECC
Q ss_conf 8855057667
Q gi|254780872|r 218 IDRVGVVYNV 227 (254)
Q Consensus 218 ~~~~g~~~~p 227 (254)
.++..+..=|
T Consensus 352 ~~v~~~DmFP 361 (375)
T PRK03522 352 ERVQLFDMFP 361 (375)
T ss_pred EEEEEECCCC
T ss_conf 8999953698
No 96
>PRK00107 gidB glucose-inhibited division protein B; Reviewed
Probab=98.99 E-value=2.7e-08 Score=72.12 Aligned_cols=173 Identities=22% Similarity=0.314 Sum_probs=107.2
Q ss_pred CCCHHHHHHHHHHHHHH--CCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCCC---CCCCCHHHCCEEEECCCHHHHHHHH
Q ss_conf 89889999999998874--688887126775175659999999886518764---4458800162888569856999999
Q gi|254780872|r 10 TKNQDAINQFSNIASEW--WEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKS---DDTHPFKGLRILDLGCGGGLLSEPM 84 (254)
Q Consensus 10 t~~~~ei~~F~~~a~~W--wD~~g~~~~Lh~~N~~R~~~I~~~i~~~~~~~~---~~~~~l~g~~VLDiGCG~G~~s~~l 84 (254)
.++.+.++++.++++.- |+.. +|-++..-..+-+.+|+.... ......++.+|+|||+|+|+=...+
T Consensus 16 ~l~~~~~~~l~~y~~ll~~~N~~--------~NLt~~~~~~~~~~rHi~DSl~~~~~~~~~~~~~vlDiGSGaGfPGipl 87 (216)
T PRK00107 16 ELSDEQLEQLEAYVELLVKWNKK--------YNLTAIRDPEEMWVRHILDSLALLPYLQGEKPIRVLDVGSGAGFPGIPL 87 (216)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCC--------EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHH
T ss_conf 99999999999999999986583--------6448569989999998885788987337665877997079999426789
Q ss_pred H--HCCCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 7--3198169952135677888865310112-111122100123211153013001243102688889988887521333
Q gi|254780872|r 85 A--QMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSN 161 (254)
Q Consensus 85 a--~~g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d~~~~l~~~~~~Lkpg 161 (254)
| .-..+++.+|.+..=+.+.+.-+..-++ |+...+..+|++. ...+||+|+|-.| .....++.-+..++++|
T Consensus 88 AI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~itsRAv----a~l~~l~~~~~~~l~~~ 162 (216)
T PRK00107 88 AIARPDLQVTLVDSLGKKIAFLRQVAAELGLKNVTVVHGRAEEFG-QEEKFDVVTSRAV----ASLSDLVELCLPLLKPG 162 (216)
T ss_pred HHHCCCCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCC-CCCCCCEEEEEHH----HCHHHHHHHHHHHCCCC
T ss_conf 997787729997387699999999999769998799863544046-5678668986054----06999999999754889
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEEE
Q ss_conf 2157743676602456415655431046789985712253889999999986983888550
Q gi|254780872|r 162 GLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVG 222 (254)
Q Consensus 162 G~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~g 222 (254)
|.+++- +|. .|..- -++....++..|+++.++.-
T Consensus 163 g~~i~~------------------------KG~-~~~~E--i~~a~~~~~~~~~~~~~~~~ 196 (216)
T PRK00107 163 GRFLAL------------------------KGQ-DPEEE--IAELPKAIKKLGGKVESVIE 196 (216)
T ss_pred CEEEEE------------------------CCC-CHHHH--HHHHHHHHHHCCCEEEEEEE
T ss_conf 799998------------------------799-95999--99989899983975999999
No 97
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; InterPro: IPR014008 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiT subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=98.98 E-value=2.3e-09 Score=78.78 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=77.3
Q ss_pred HHHC-CEEEECCCHHHHHHHHHHC--C-CCEEEECCHHHHHHHHHHHHHCC-CC-CCCCCCCCCC------CCCCC---C
Q ss_conf 0016-2888569856999999731--9-81699521356778888653101-12-1111221001------23211---1
Q gi|254780872|r 65 FKGL-RILDLGCGGGLLSEPMAQM--G-ATVTGIDPSTKNIAIAKNHANMK-NI-NIDYRVSCAE------EIAET---D 129 (254)
Q Consensus 65 l~g~-~VLDiGCG~G~~s~~la~~--g-~~V~giD~S~~~i~~Ak~~a~~~-~~-~i~~~~~~~~------~l~~~---~ 129 (254)
-++. +++|||||||..+..++++ . .+|+|||=+++.++.-+.+++.. .. ++....+++. +.+.. .
T Consensus 18 ~~~~~v~wDIGaGtGS~~iE~~~~~p~~g~v~aiEr~~~~~~~~~~N~~~~c~~~~~~i~~g~ap~~~~~~~~~~~~~~~ 97 (135)
T TIGR02469 18 RPGDSVLWDIGAGTGSVTIEAARLVPNSGRVYAIERNPEALRLIERNLRRFCGVSNIVIVEGDAPEELLNSDAPEDSAKL 97 (135)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHCCC
T ss_conf 99994688960574838999997359860799985376898799999998289996325635568433367777100588
Q ss_pred CCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 5301300124310268888998888752133321577436
Q gi|254780872|r 130 EKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTI 169 (254)
Q Consensus 130 ~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist~ 169 (254)
..+|.|+.-+-=. .....|+.+.+.|+|||++++.-+
T Consensus 98 ~~~Da~fvGGs~~---~~~~il~~~~~~l~~GGr~v~na~ 134 (135)
T TIGR02469 98 PEPDAVFVGGSGG---KLEEILEAVERRLRPGGRIVLNAI 134 (135)
T ss_pred CCCCEEEECCCCH---HHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 7468888838971---789999999850596888888513
No 98
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.97 E-value=2.9e-09 Score=78.14 Aligned_cols=140 Identities=20% Similarity=0.247 Sum_probs=99.2
Q ss_pred CCCCCHHHCCEEEECCCHHHHHHHHHHCCC-CEEEECCHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCC--CCCCCHH
Q ss_conf 445880016288856985699999973198-169952135677888865310112---1111221001232--1115301
Q gi|254780872|r 60 DDTHPFKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNI---NIDYRVSCAEEIA--ETDEKFD 133 (254)
Q Consensus 60 ~~~~~l~g~~VLDiGCG~G~~s~~la~~g~-~V~giD~S~~~i~~Ak~~a~~~~~---~i~~~~~~~~~l~--~~~~~FD 133 (254)
....|-+|.+|||...|-|+.+....+.|| .|.-|+-.++.|+.|+.+--..++ .|+...+++.++. +.+++||
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred HEECCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCEEECCCHHHHHHCCCCCCCC
T ss_conf 24443668784432467138999998758748999960877277413588984202003178616599997418865301
Q ss_pred HHEECCC-HHCCCC--HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHH
Q ss_conf 3001243-102688--8899888875213332157743676602456415655431046789985712253889999999
Q gi|254780872|r 134 IILNMEV-IEHVDN--IPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFL 210 (254)
Q Consensus 134 ~V~~~~v-leHv~d--~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l 210 (254)
+|+.--- +.|-.. -..+..+++|+|||||.+|--|=|-.-+. +| ---|..+...|
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry----------------rG------~d~~~gVa~RL 265 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY----------------RG------LDLPKGVAERL 265 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC----------------CC------CCHHHHHHHHH
T ss_conf 686079733102357689999999997076980799727987402----------------46------77147899999
Q ss_pred HHCCCEEEEEE
Q ss_conf 98698388855
Q gi|254780872|r 211 AANKVKIIDRV 221 (254)
Q Consensus 211 ~~~g~~~~~~~ 221 (254)
++.||++++..
T Consensus 266 r~vGF~~v~~~ 276 (287)
T COG2521 266 RRVGFEVVKKV 276 (287)
T ss_pred HHCCCEEEEEE
T ss_conf 86173444323
No 99
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=98.97 E-value=7.9e-09 Score=75.43 Aligned_cols=101 Identities=13% Similarity=0.065 Sum_probs=77.3
Q ss_pred HHHCCEEEECCCHHHHHHHHHHCC---CCEEEECCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCC---CCCCHHHHE
Q ss_conf 001628885698569999997319---8169952135677888865310112--11112210012321---115301300
Q gi|254780872|r 65 FKGLRILDLGCGGGLLSEPMAQMG---ATVTGIDPSTKNIAIAKNHANMKNI--NIDYRVSCAEEIAE---TDEKFDIIL 136 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s~~la~~g---~~V~giD~S~~~i~~Ak~~a~~~~~--~i~~~~~~~~~l~~---~~~~FD~V~ 136 (254)
..|.+|||.|.|+|.++.+|++.. .+|...|..++..+.|+...+..++ ++.+.+.++-.-.+ ....+|.|+
T Consensus 101 ~PG~~VlEaGtGSGsLT~~Laravgp~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv~~~gf~~~~~~~~D~Vf 180 (309)
T pfam08704 101 KPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDVCKSGFDTEVSNKADAVF 180 (309)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCCCCCCCCCEEE
T ss_conf 99999998367842999999997488865999844789999999999874987505889852001366644566435899
Q ss_pred ECCCHHCCCCHHHHHHHHHHHCC-CCCEEEEECCC
Q ss_conf 12431026888899888875213-33215774367
Q gi|254780872|r 137 NMEVIEHVDNIPYFIKTCCSLLL-SNGLMFISTIN 170 (254)
Q Consensus 137 ~~~vleHv~d~~~~l~~~~~~Lk-pgG~liist~N 170 (254)
. -+++|+.++..+.++|| |||.++.-.|.
T Consensus 181 L-----Dlp~PW~ai~~~~~~Lk~~Gg~l~~f~P~ 210 (309)
T pfam08704 181 L-----DLPAPWEAIPHAAKALKVEGGRLCSFSPC 210 (309)
T ss_pred E-----CCCCHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 7-----58997998899998606899689999198
No 100
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.96 E-value=3.7e-09 Score=77.47 Aligned_cols=124 Identities=16% Similarity=0.298 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHH----HHHHHHH-------CCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 565999999988651876444588001628885698569----9999973-------19816995213567788886531
Q gi|254780872|r 41 PVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGL----LSEPMAQ-------MGATVTGIDPSTKNIAIAKNHAN 109 (254)
Q Consensus 41 ~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~----~s~~la~-------~g~~V~giD~S~~~i~~Ak~~a~ 109 (254)
|...+.+.+.+.......... .-.+|+-+||+||. ++..+.+ ...+|+|.|+|..+|+.|+.-.-
T Consensus 75 ~~~f~~l~~~v~p~l~~~~~~----~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y 150 (268)
T COG1352 75 PEHFEELRDEVLPELVKRKKG----RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIY 150 (268)
T ss_pred CHHHHHHHHHHHHHHHHHCCC----CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCC
T ss_conf 089999999987998730469----8539996676899558999999998733225874389999799999999862888
Q ss_pred C-----CCCC-------------------------CCCCCCCCCCCCCCCCCHHHHEECCCHHCCCCH--HHHHHHHHHH
Q ss_conf 0-----1121-------------------------111221001232111530130012431026888--8998888752
Q gi|254780872|r 110 M-----KNIN-------------------------IDYRVSCAEEIAETDEKFDIILNMEVIEHVDNI--PYFIKTCCSL 157 (254)
Q Consensus 110 ~-----~~~~-------------------------i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d~--~~~l~~~~~~ 157 (254)
. .++. |.|...+.-+-....+.||+|+|-+||-+++.+ ..+++..+..
T Consensus 151 ~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~ 230 (268)
T COG1352 151 PSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADS 230 (268)
T ss_pred CHHHHHCCCCHHHHHHHEEECCCCCEEECHHHHCCCEEEECCCCCCCCCCCCCCEEEECCEEEEECHHHHHHHHHHHHHH
T ss_conf 76676544998999633764699847987687624377535788875435898889984148863789999999999997
Q ss_pred CCCCCEEEEEC
Q ss_conf 13332157743
Q gi|254780872|r 158 LLSNGLMFIST 168 (254)
Q Consensus 158 LkpgG~liist 168 (254)
|+|||.|++..
T Consensus 231 L~~gG~LflG~ 241 (268)
T COG1352 231 LKPGGLLFLGH 241 (268)
T ss_pred HCCCCEEEECC
T ss_conf 48997899826
No 101
>pfam09445 Methyltransf_15 RNA cap guanine-N2 methyltransferase. RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyse methylation of the exocyclic N2 amine of 7-methylguanosine.
Probab=98.95 E-value=7.4e-10 Score=81.79 Aligned_cols=71 Identities=24% Similarity=0.283 Sum_probs=61.9
Q ss_pred CCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCC----CCCCCHHHHEEC
Q ss_conf 6288856985699999973198169952135677888865310112--1111221001232----111530130012
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI--NIDYRVSCAEEIA----ETDEKFDIILNM 138 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~--~i~~~~~~~~~l~----~~~~~FD~V~~~ 138 (254)
+.|||++||.|-.+..+|+.+.+|+|||+++.+++.|+.+|+..++ +|+|.++|..++. ....+||+|+++
T Consensus 2 ~ivlD~fcG~Ggn~I~fA~~~~~Vi~vDi~~~~l~~A~~NA~iyGV~drI~fi~gD~f~~~~~l~~~~~~~DvVf~s 78 (165)
T pfam09445 2 RIILDVFCGAGGNTIQFANVFCSVIGIDINPEHLACAQHNAEVYGVSDRIWFILGDWFELLAKLKFGKIPYDCVFLS 78 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEC
T ss_conf 79999377807999999975898999979899999999989983987317999775999978876358875589977
No 102
>pfam01596 Methyltransf_3 O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production.
Probab=98.95 E-value=1.9e-09 Score=79.21 Aligned_cols=99 Identities=20% Similarity=0.240 Sum_probs=78.5
Q ss_pred HHCCEEEECCCHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCC------CCCCHHH
Q ss_conf 0162888569856999999731---98169952135677888865310112--11112210012321------1153013
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNI--NIDYRVSCAEEIAE------TDEKFDI 134 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~---g~~V~giD~S~~~i~~Ak~~a~~~~~--~i~~~~~~~~~l~~------~~~~FD~ 134 (254)
+.++|||||+++|+-+..+|+. +.+|+.+|.++++.+.|+++.++.++ +|+++.+++.+... ..++||+
T Consensus 44 ~ak~iLEiGT~~GySal~lA~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gdA~~~l~~l~~~~~~~~fD~ 123 (204)
T pfam01596 44 GAKRTLEIGVFTGYSLLATALALPEDGKITACDIDREAYEIGLPFIQKAGVADKIEFRVGDALKTLEQLVEDKPLGEFDF 123 (204)
T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHCCCCCCCCE
T ss_conf 98789998343259999999848999689999804899999999999779874479998749999999984477776438
Q ss_pred HEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 001243102688889988887521333215774
Q gi|254780872|r 135 ILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 135 V~~~~vleHv~d~~~~l~~~~~~LkpgG~liis 167 (254)
|+.-.- =.+...++..+.++|+|||.+++.
T Consensus 124 vFiDad---K~~Y~~y~e~~~~lL~~gGiii~D 153 (204)
T pfam01596 124 AFVDAD---KSSYPNYYERLLELVKVGGLIAID 153 (204)
T ss_pred EEEECC---HHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 998188---877799999999863698099994
No 103
>KOG3045 consensus
Probab=98.95 E-value=1e-08 Score=74.79 Aligned_cols=110 Identities=20% Similarity=0.306 Sum_probs=78.7
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCC
Q ss_conf 01628885698569999997319816995213567788886531011211112210012321115301300124310268
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVD 145 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~ 145 (254)
++.-|.|+|||-+.++. ..-.+|...|+-.- +. +....++.++|.++++.|++++.-.|- ..
T Consensus 180 ~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a~------------~~--~V~~cDm~~vPl~d~svDvaV~CLSLM-gt 241 (325)
T KOG3045 180 KNIVIADFGCGEAKIAS---SERHKVHSFDLVAV------------NE--RVIACDMRNVPLEDESVDVAVFCLSLM-GT 241 (325)
T ss_pred CCEEEEECCCCHHHHHH---CCCCCEEEEEEECC------------CC--CEEECCCCCCCCCCCCCCEEEEEHHHH-CC
T ss_conf 76478853664233320---46665046630027------------88--535322447867667544787527553-43
Q ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 888998888752133321577436766024564156554310467899857122538899999999869838885
Q gi|254780872|r 146 NIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDR 220 (254)
Q Consensus 146 d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~ 220 (254)
|...++++++|+|||||.+.|+-+- | +|-.-.+....+..-||++..+
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv~----S-----------------------Rf~dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045 242 NLADFIKEANRILKPGGLLYIAEVK----S-----------------------RFSDVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred CHHHHHHHHHHHHCCCCEEEEEEHH----H-----------------------HCCCHHHHHHHHHHCCCEEEEH
T ss_conf 3899999998873358669998602----2-----------------------1340889999998728702211
No 104
>TIGR00740 TIGR00740 methyltransferase, putative; InterPro: IPR005271 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . The proteins of this family are restricted to the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 0dentity. It is reasonable to predict equivalent function within this subfamily. .
Probab=98.94 E-value=2.7e-09 Score=78.28 Aligned_cols=117 Identities=17% Similarity=0.281 Sum_probs=89.8
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHC----CCCEEEECCHHHHHHHHHHHHHCC--CCCCCCC
Q ss_conf 9999998865187644458800162888569856999999731----981699521356778888653101--1211112
Q gi|254780872|r 45 KYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQM----GATVTGIDPSTKNIAIAKNHANMK--NINIDYR 118 (254)
Q Consensus 45 ~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~----g~~V~giD~S~~~i~~Ak~~a~~~--~~~i~~~ 118 (254)
-||...+.+.+-.+ .+.+..|-|+||.+|.++.++.|. ..+++|||-|..|++.||+|...- ...+++.
T Consensus 45 yfI~~nL~E~~~~k-----slp~~~vYDLGCS~G~~~l~~~R~I~~~~~~~igIDNS~pM~~~~~~~~~~y~~~~Pv~~~ 119 (247)
T TIGR00740 45 YFIGMNLAERFVPK-----SLPKPLVYDLGCSTGAATLSLRRNIQQDNIKIIGIDNSMPMLERCREHIKAYKNAIPVEVL 119 (247)
T ss_pred HHHHHHHHHHHHHH-----CCCCCCEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99987777654331-----1688741223343235776653046878537988418888999999999874247882320
Q ss_pred CCCCCCCCCCCCCHHHHEECCCHHCCC--CHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 210012321115301300124310268--88899888875213332157743
Q gi|254780872|r 119 VSCAEEIAETDEKFDIILNMEVIEHVD--NIPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 119 ~~~~~~l~~~~~~FD~V~~~~vleHv~--d~~~~l~~~~~~LkpgG~liist 168 (254)
+.|+.+....+.+ .|+..-+|+.++ +....|++++.-|.|||.|+++-
T Consensus 120 ~~D~~~v~~~~AS--~~~L~F~LQFl~P~~R~~LL~KIY~~L~~nGvL~lsE 169 (247)
T TIGR00740 120 CMDIREVEIKNAS--MVVLNFTLQFLRPEEREALLKKIYNGLNPNGVLVLSE 169 (247)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 1024566665546--8878877604782347999999874107786688632
No 105
>pfam01739 CheR CheR methyltransferase, SAM binding domain. CheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine- dependent methyltransferase - the C-terminal domain (this one) binds SAM.
Probab=98.92 E-value=7.6e-09 Score=75.51 Aligned_cols=100 Identities=18% Similarity=0.283 Sum_probs=69.5
Q ss_pred HCCEEEECCCHHH----HHHHHHHC-------CCCEEEECCHHHHHHHHHHHHHC----CCC------------------
Q ss_conf 1628885698569----99999731-------98169952135677888865310----112------------------
Q gi|254780872|r 67 GLRILDLGCGGGL----LSEPMAQM-------GATVTGIDPSTKNIAIAKNHANM----KNI------------------ 113 (254)
Q Consensus 67 g~~VLDiGCG~G~----~s~~la~~-------g~~V~giD~S~~~i~~Ak~~a~~----~~~------------------ 113 (254)
..+|+-+||+||. ++..+.+. -.+|+|+|+|..+|+.|+.-.-. .++
T Consensus 31 ~lrIWsagCStGEE~YSlAi~l~e~~~~~~~~~~~I~atDI~~~~l~~Ar~G~Y~~~~~~~~p~~~~~ryF~~~~~~~~~ 110 (194)
T pfam01739 31 RVRIWSAGCSSGEEPYSLAMLLAETLPNALPWDFKILATDIDLSALEKARAGVYPERELEGLPPELLRRYFTKGAGGGYR 110 (194)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCCCCEE
T ss_conf 55999736889951899999999974325787449999739889999998789889998459999999628607899487
Q ss_pred -------CCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCC--HHHHHHHHHHHCCCCCEEEEE
Q ss_conf -------111122100123211153013001243102688--889988887521333215774
Q gi|254780872|r 114 -------NIDYRVSCAEEIAETDEKFDIILNMEVIEHVDN--IPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 114 -------~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d--~~~~l~~~~~~LkpgG~liis 167 (254)
.|.|.+.++-+-+ ....||+|+|-+||-++.+ ...+++.+++.|+|||.|++.
T Consensus 111 i~~~lr~~V~F~~~NL~~~~-~~~~~DlIfCRNVlIYF~~~~~~~vl~~l~~~L~~gG~L~lG 172 (194)
T pfam01739 111 VKPEIKEMVLFEYHNLLDYP-PLGDFDVIFCRNVLIYFDEETQRKILNRFASALKPGGYLFLG 172 (194)
T ss_pred ECHHHHCCCEEEECCCCCCC-CCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 68899711668546655688-767503999802101379999999999999984899499980
No 106
>pfam05724 TPMT Thiopurine S-methyltransferase (TPMT). This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulfhydryl compounds, including anticancer and immunosuppressive thiopurines.
Probab=98.92 E-value=5e-09 Score=76.65 Aligned_cols=137 Identities=21% Similarity=0.256 Sum_probs=96.4
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHH-------------CCCCCCCCCCCCCCCCCCC-CCC
Q ss_conf 01628885698569999997319816995213567788886531-------------0112111122100123211-153
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHAN-------------MKNINIDYRVSCAEEIAET-DEK 131 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~-------------~~~~~i~~~~~~~~~l~~~-~~~ 131 (254)
.+.+||=-|||.|.-...||+.|++|+|+|+|+.+++.+..... ....+|++.++|+-++... .++
T Consensus 22 ~~~rvlVPlCGks~D~~wLa~~G~~VvGvels~~Av~~ff~e~~~~~~~~~~~~~~~~~~~~i~i~~gD~F~l~~~~~g~ 101 (203)
T pfam05724 22 PGLRVLVPLCGKALDMVWLAEQGHFVVGVEISELAVEKFFAEANLSPPITELSGFKEYRAGGIELLCGDFFTLPREELGK 101 (203)
T ss_pred CCCEEEEECCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCEECCCCEEECCCCEEEEECCHHCCCHHHCCC
T ss_conf 99889996899859999998389848999567999999999737887510136621320586489977321378434687
Q ss_pred HHHHEECCCHHCCC--CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHH
Q ss_conf 01300124310268--8889988887521333215774367660245641565543104678998571225388999999
Q gi|254780872|r 132 FDIILNMEVIEHVD--NIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECF 209 (254)
Q Consensus 132 FD~V~~~~vleHv~--d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~ 209 (254)
||+|+=...|--++ ......+.+.++|+|||.+++-|+..... + +.- |+ | -++++|+.++
T Consensus 102 fD~IyDraal~ALpp~~R~~Ya~~l~~lL~pgg~~lLitl~y~~~---------~--~~G-PP----f--sv~~~Ev~~l 163 (203)
T pfam05724 102 FDLIYDRAALCALPPEMRPRYAKQMYELLPPGGEGLLITLDYPQT---------D--HEG-PP----F--SVPAAELEAL 163 (203)
T ss_pred CCEEEEECCEEECCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC---------C--CCC-CC----C--CCCHHHHHHH
T ss_conf 348997032353898999999999999718996699999973865---------5--799-48----9--8999999987
Q ss_pred HHHCCCEEEEEE
Q ss_conf 998698388855
Q gi|254780872|r 210 LAANKVKIIDRV 221 (254)
Q Consensus 210 l~~~g~~~~~~~ 221 (254)
.. .+|++..+.
T Consensus 164 f~-~~f~i~~L~ 174 (203)
T pfam05724 164 FG-GGWKVARLE 174 (203)
T ss_pred HC-CCCEEEEEE
T ss_conf 08-985699965
No 107
>pfam02475 Met_10 Met-10+ like-protein. The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation.
Probab=98.91 E-value=6.9e-09 Score=75.77 Aligned_cols=95 Identities=14% Similarity=0.242 Sum_probs=77.6
Q ss_pred HHCCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCHHHHEECCCH
Q ss_conf 01628885698569999997319--81699521356778888653101121--111221001232111530130012431
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNIN--IDYRVSCAEEIAETDEKFDIILNMEVI 141 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~~~--i~~~~~~~~~l~~~~~~FD~V~~~~vl 141 (254)
+|..|||.-||.|.++.++|+.+ .+|+++|+++.+++.++.+++.+++. +...++|+.++. ...+||.|++--
T Consensus 100 ~ge~VlD~faGvG~f~l~~ak~~~~~~V~a~DlNp~a~~~l~~N~~lN~v~~~i~~~~gD~~~~~-~~~~~Drvimnl-- 176 (199)
T pfam02475 100 EGEVVVDMFAGIGPFSIPIAKHSKAKRVYAVELNPEAVKYLKENIKLNKVEGVISPILGDVRDVI-LEGVADRVIMNL-- 176 (199)
T ss_pred CCCEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHC-CCCCCCEEEECC--
T ss_conf 99889981688657789986407864899982899999999999998099983699928787860-467400999489--
Q ss_pred HCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 026888899888875213332157
Q gi|254780872|r 142 EHVDNIPYFIKTCCSLLLSNGLMF 165 (254)
Q Consensus 142 eHv~d~~~~l~~~~~~LkpgG~li 165 (254)
-.....+|..+.++||+||.+-
T Consensus 177 --P~~a~~fL~~A~~~lk~gg~iH 198 (199)
T pfam02475 177 --PKSAHEFLDKALRAVKDGGVIH 198 (199)
T ss_pred --CCCHHHHHHHHHHHHCCCCEEE
T ss_conf --7316999999999855898983
No 108
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.91 E-value=7.6e-09 Score=75.51 Aligned_cols=107 Identities=20% Similarity=0.245 Sum_probs=80.3
Q ss_pred CCCHHHCCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCHHHHE-
Q ss_conf 588001628885698569999997319--81699521356778888653101121111221001232--1115301300-
Q gi|254780872|r 62 THPFKGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA--ETDEKFDIIL- 136 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~--~~~~~FD~V~- 136 (254)
..|..|.+|||+.||.|-=+.+++.++ ++|+++|+|+.-++..+.+++..++++....++..... ..+++||.|+
T Consensus 241 l~p~~g~~VLD~CAaPGGKt~~la~~~~~~~v~A~D~~~~Rl~~l~~n~~Rlg~~~~v~~~d~~~~~~~~~~~~fD~ILl 320 (428)
T PRK10901 241 LAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILL 320 (428)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCEEEE
T ss_conf 49888987987168876689999996458928999698889999999999759973999776557233134456787997
Q ss_pred ---E--CCCHHCCCCH----------------HHHHHHHHHHCCCCCEEEEEC
Q ss_conf ---1--2431026888----------------899888875213332157743
Q gi|254780872|r 137 ---N--MEVIEHVDNI----------------PYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 137 ---~--~~vleHv~d~----------------~~~l~~~~~~LkpgG~liist 168 (254)
| .+||.+=||. ..+|.++.++|||||.|+.||
T Consensus 321 DaPCSg~G~lrR~Pdikw~~~~~di~~l~~lQ~~iL~~a~~~lk~gG~LvYsT 373 (428)
T PRK10901 321 DAPCSATGVIRRHPDIKWLRRDRDIAELAQLQSEILDAIWPHLKSGGTLVYAT 373 (428)
T ss_pred CCCCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 58988872444685421128999999999999999999998668898899998
No 109
>pfam10672 Methyltrans_SAM S-adenosylmethionine-dependent methyltransferase. Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases.
Probab=98.86 E-value=6.8e-09 Score=75.80 Aligned_cols=103 Identities=13% Similarity=0.163 Sum_probs=79.3
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCC-CEEEECCHHHHHHHHHHHHHCCCCC---CCCCCCCCCCCC---CCCCCHHHHEEC
Q ss_conf 016288856985699999973198-1699521356778888653101121---111221001232---111530130012
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNIN---IDYRVSCAEEIA---ETDEKFDIILNM 138 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~-~V~giD~S~~~i~~Ak~~a~~~~~~---i~~~~~~~~~l~---~~~~~FD~V~~~ 138 (254)
+|++|||+=|-||-|+.+.+.-|+ +|+.||.|..+++.|+.++..++++ ++|...++-+.. ...+.||+|++-
T Consensus 123 ~g~rvLn~Fsytg~fsv~A~~~GA~~v~~vD~S~~al~~a~~N~~lN~~~~~~~~~~~~D~f~~l~~~~~~~~fD~VilD 202 (286)
T pfam10672 123 KGKNVLNLFAYTCGFSVAAIAGGASQVVNVDMARGSLSKGRDNHRLNGHDLGRVSFLGHDIFKSWGKIKKLGPYDLVIID 202 (286)
T ss_pred CCCCEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCCEEEEC
T ss_conf 89832531147869999987679877999919889999999999976999543699983099999998617999879987
Q ss_pred ------CCHHCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf ------431026888899888875213332157743
Q gi|254780872|r 139 ------EVIEHVDNIPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 139 ------~vleHv~d~~~~l~~~~~~LkpgG~liist 168 (254)
....-..+...++..+.++|+|||.|+.++
T Consensus 203 PPsf~k~~~~~~~~Y~~l~~~a~~ll~~gG~L~~~s 238 (286)
T pfam10672 203 PPSFQKGSFALTKDYKKILRRLPELLVEGGTVLACV 238 (286)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 999888724788789999999998608996899981
No 110
>KOG3420 consensus
Probab=98.83 E-value=1.7e-09 Score=79.55 Aligned_cols=78 Identities=23% Similarity=0.331 Sum_probs=67.9
Q ss_pred CCCHHHCCEEEECCCHHHHHHHHHHCCC-CEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECC
Q ss_conf 5880016288856985699999973198-16995213567788886531011211112210012321115301300124
Q gi|254780872|r 62 THPFKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNME 139 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG~G~~s~~la~~g~-~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~ 139 (254)
...++|++++|+|||.|.++.+.+-.+. .|+|+|+.+.+++++++++.+..+++++.+.++.++....+.||.++..-
T Consensus 44 ygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420 44 YGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred HCCCCCCCHHHHCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCHHHHHHHHHEEEEECCCHHCCCCEEEEEEECC
T ss_conf 0120474622524761156777505787337864058899999861668752334212222155110587676678668
No 111
>KOG2904 consensus
Probab=98.83 E-value=1.3e-08 Score=74.14 Aligned_cols=117 Identities=29% Similarity=0.369 Sum_probs=74.9
Q ss_pred HHHCCEEEECCCHHHHHHHHHH-CC-CCEEEECCHHHHHHHHHHHHHCCCCC--CCCCC----CCCC-CCCCCCCCHHHH
Q ss_conf 0016288856985699999973-19-81699521356778888653101121--11122----1001-232111530130
Q gi|254780872|r 65 FKGLRILDLGCGGGLLSEPMAQ-MG-ATVTGIDPSTKNIAIAKNHANMKNIN--IDYRV----SCAE-EIAETDEKFDII 135 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s~~la~-~g-~~V~giD~S~~~i~~Ak~~a~~~~~~--i~~~~----~~~~-~l~~~~~~FD~V 135 (254)
.++..|||+|||+|..|..+.. ++ ..|++||.|+.+|..|..++....+. +..++ ++.. ..+...+++|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred CCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEE
T ss_conf 26666887057831889999834787348998532889999998899874158468984122201256554545752488
Q ss_pred EECC--------------CH------------HCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 0124--------------31------------0268888998888752133321577436766024564156
Q gi|254780872|r 136 LNME--------------VI------------EHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAII 181 (254)
Q Consensus 136 ~~~~--------------vl------------eHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~ 181 (254)
+|.- |- +-....-.++.-+.|.|+|||.+++++.-+.--+++..++
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~ 298 (328)
T KOG2904 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIW 298 (328)
T ss_pred ECCCCCCCCCCHHHCCCHHEECCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 538996555512232713302374454306663269999998766754566885889733556681999999
No 112
>TIGR00091 TIGR00091 tRNA (guanine-N(7)-)-methyltransferase; InterPro: IPR004395 This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria . It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In Escherichia coli, this protein flanks the DNA repair protein MutY, also called micA.; GO: 0008168 methyltransferase activity.
Probab=98.82 E-value=9.1e-09 Score=75.02 Aligned_cols=103 Identities=27% Similarity=0.348 Sum_probs=78.9
Q ss_pred CEEEECCCHHHHHHHHHHCC--CCEEEECC--------HHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 28885698569999997319--81699521--------35677888865310112---1111221001232111530130
Q gi|254780872|r 69 RILDLGCGGGLLSEPMAQMG--ATVTGIDP--------STKNIAIAKNHANMKNI---NIDYRVSCAEEIAETDEKFDII 135 (254)
Q Consensus 69 ~VLDiGCG~G~~s~~la~~g--~~V~giD~--------S~~~i~~Ak~~a~~~~~---~i~~~~~~~~~l~~~~~~FD~V 135 (254)
-+||||||.|.+...||+.. ...+||++ -+..|..|-..+.+.++ |+.+.++|+..+.. ..+---
T Consensus 22 ~~~EIGcG~G~fl~~~A~~nP~~~flGIE~RvqvtnYv~~p~v~~a~~~~~~~g~~~~Nl~~L~~DA~~l~~--~~~~~~ 99 (216)
T TIGR00091 22 LVLEIGCGKGRFLIKMAKQNPDKNFLGIEIRVQVTNYVETPIVLKAINKANKLGLKLRNLHVLCGDANELLE--KFFPDG 99 (216)
T ss_pred EEEEECCCCCCCHHHHHHHCCCCCEEEEEEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHH--HHHCCC
T ss_conf 489841687602689977279972777899988741022728998875576617844213522136023204--540078
Q ss_pred --EECCCHHCCCCH-------------HHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf --012431026888-------------89988887521333215774367660
Q gi|254780872|r 136 --LNMEVIEHVDNI-------------PYFIKTCCSLLLSNGLMFISTINRNL 173 (254)
Q Consensus 136 --~~~~vleHv~d~-------------~~~l~~~~~~LkpgG~liist~Nr~~ 173 (254)
.+..|.=|.||| ..+|+++.++|+|||.+-+.|=|+..
T Consensus 100 PP~l~k~f~~FPDPW~KkRH~KRR~~~~~Fl~~~~~~L~~~G~i~~~TD~~~l 152 (216)
T TIGR00091 100 PPSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEVANVLKKGGVIELKTDNEPL 152 (216)
T ss_pred CCCEEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEECCCHHH
T ss_conf 98045688877889510210223425678999999970459689997078467
No 113
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.80 E-value=1.7e-08 Score=73.32 Aligned_cols=103 Identities=24% Similarity=0.292 Sum_probs=82.4
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCC-EEEECCHHHHHHHHHHHHHCCCCCC---CCCCCCCCC-CCCCCCCHHHHEE---
Q ss_conf 0162888569856999999731981-6995213567788886531011211---112210012-3211153013001---
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGAT-VTGIDPSTKNIAIAKNHANMKNINI---DYRVSCAEE-IAETDEKFDIILN--- 137 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~-V~giD~S~~~i~~Ak~~a~~~~~~i---~~~~~~~~~-l~~~~~~FD~V~~--- 137 (254)
+|+++|-+=|-||.+|.+.|.-|+. ++-||+|...++.|+.+...++++- .+++.|+-+ +....+.||+|+|
T Consensus 552 ~gk~fLNLF~YTgt~sv~Aa~gGA~~t~sVD~S~tyl~Wa~~N~~lN~~~~~~h~~v~aD~~~wl~~~~~~fDli~~DPP 631 (716)
T PRK11783 552 KGKRFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRFIQADCLAWLKEAREQFDLIFIDPP 631 (716)
T ss_pred CCCCEEEEEECCCCEEHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHCCCCCCEEEECCC
T ss_conf 78846431222561021335279612278627087999999999854999634738964089999857776678998899
Q ss_pred --------CCCHHCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf --------2431026888899888875213332157743
Q gi|254780872|r 138 --------MEVIEHVDNIPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 138 --------~~vleHv~d~~~~l~~~~~~LkpgG~liist 168 (254)
-+++.=-.|-..+|..+.++|.|||.|+|||
T Consensus 632 tFSnSk~m~~~~dvqrDh~~li~~~~~~L~~~G~l~FS~ 670 (716)
T PRK11783 632 TFSNSKRMEDSFDVQRDHVALIKLAMRLLRPGGTLYFSN 670 (716)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 998766678863220309999999998608996899962
No 114
>KOG1500 consensus
Probab=98.79 E-value=1.3e-08 Score=73.99 Aligned_cols=103 Identities=28% Similarity=0.370 Sum_probs=72.3
Q ss_pred CCCHHHCCEEEECCCHHHHHHHHHHCCC-CEEEECCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCCCHHHHEEC
Q ss_conf 5880016288856985699999973198-169952135677888865310112--1111221001232111530130012
Q gi|254780872|r 62 THPFKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNI--NIDYRVSCAEEIAETDEKFDIILNM 138 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG~G~~s~~la~~g~-~V~giD~S~~~i~~Ak~~a~~~~~--~i~~~~~~~~~l~~~~~~FD~V~~~ 138 (254)
...++++-|||||||.|+++...+..|+ +|.+|+.| +|-+.|+.-...+++ .|..+-+.+|++. ..++-|++++-
T Consensus 173 ~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie-LPEk~DviISE 250 (517)
T KOG1500 173 HSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE-LPEKVDVIISE 250 (517)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEHH-HHHHHHHHHHHCCCCCCEEEECCCCCCEEC-CCCCCCEEEEC
T ss_conf 3345774899815882489999987386538987456-799999998743663203787056320103-75103478725
Q ss_pred CCHHC-CCC--HHHHHHHHHHHCCCCCEEEEE
Q ss_conf 43102-688--889988887521333215774
Q gi|254780872|r 139 EVIEH-VDN--IPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 139 ~vleH-v~d--~~~~l~~~~~~LkpgG~liis 167 (254)
-+=.- +.+ .+.. -..++.|||+|.+|=+
T Consensus 251 PMG~mL~NERMLEsY-l~Ark~l~P~GkMfPT 281 (517)
T KOG1500 251 PMGYMLVNERMLESY-LHARKWLKPNGKMFPT 281 (517)
T ss_pred CCHHHHHHHHHHHHH-HHHHHHCCCCCCCCCC
T ss_conf 621411108889999-9998742877744675
No 115
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.79 E-value=1.8e-08 Score=73.19 Aligned_cols=101 Identities=20% Similarity=0.251 Sum_probs=69.3
Q ss_pred HCCEEEECCCHHH--HHHH--HHH----C--CCCEEEECCHHHHHHHHHHHHH----CCCC-------------------
Q ss_conf 1628885698569--9999--973----1--9816995213567788886531----0112-------------------
Q gi|254780872|r 67 GLRILDLGCGGGL--LSEP--MAQ----M--GATVTGIDPSTKNIAIAKNHAN----MKNI------------------- 113 (254)
Q Consensus 67 g~~VLDiGCG~G~--~s~~--la~----~--g~~V~giD~S~~~i~~Ak~~a~----~~~~------------------- 113 (254)
..+|+-.||.||. +|.+ +++ . ..+|+|.|+|+.+|+.|+.-.- ..++
T Consensus 116 ~lRIWSAgCSTGEEpYSiAm~l~E~~~~~~~~~~I~aTDIs~~~L~~Ar~GiY~~~~~~~~p~~~~~ryF~~~~~~~~g~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRLEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCHHHHHCCCHHHHHHHEECCCCCCCCE
T ss_conf 75899767788723999999999973237777079999798889999980898889984599999951164157876661
Q ss_pred ---------CCCCCCCCCCCCCC-CCCCHHHHEECCCHHCCCCH--HHHHHHHHHHCCCCCEEEEE
Q ss_conf ---------11112210012321-11530130012431026888--89988887521333215774
Q gi|254780872|r 114 ---------NIDYRVSCAEEIAE-TDEKFDIILNMEVIEHVDNI--PYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 114 ---------~i~~~~~~~~~l~~-~~~~FD~V~~~~vleHv~d~--~~~l~~~~~~LkpgG~liis 167 (254)
.|.|.+.+.-+-+. ..+.||+|+|-+||-+++.. ..+++.+++.|+|||+|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fDlIfCRNVlIYFd~~~q~~vl~~~~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQSLNLLAKQYTVPGPFDAIFCRNVMIYFDKTTQQEILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEECHHHHCCCEEEHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 874578763077714006799888889951999784053678999999999999986899289983
No 116
>pfam02527 GidB rRNA small subunit methyltransferase G. This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA.
Probab=98.78 E-value=7e-08 Score=69.56 Aligned_cols=126 Identities=21% Similarity=0.307 Sum_probs=93.3
Q ss_pred HHCCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCHHHHEECCCHH
Q ss_conf 0162888569856999999731--98169952135677888865310112-11112210012321115301300124310
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAETDEKFDIILNMEVIE 142 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~~~~~FD~V~~~~vle 142 (254)
.+.+++|+|+|+|+=...+|-. ..+++-+|.+..-+.+-+.-..+.++ |+...+..+|++. ..++||+|+|-.|
T Consensus 48 ~~~~ilDiGSGaGfPGi~LAI~~p~~~~~LvEs~~KK~~FL~~v~~~L~L~nv~v~~~R~E~~~-~~~~~D~v~aRA~-- 124 (184)
T pfam02527 48 IRIKVADVGSGAGFPGIPLAIAFPDKKLTLLESLLKKINFLEELKKELNLENVTIVHARAEEYQ-HEEQYDVITSRAV-- 124 (184)
T ss_pred CCCEEEECCCCCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCHHHCC-CCCCCCEEEECHH--
T ss_conf 7986883479888467999996778559999282899999999999859997699956044146-4467878998100--
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEEE
Q ss_conf 26888899888875213332157743676602456415655431046789985712253889999999986983888550
Q gi|254780872|r 143 HVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVG 222 (254)
Q Consensus 143 Hv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~g 222 (254)
.....+++-+..+++++|.+++- +|- .|..-+ ++..+.++.-|.+++.+.+
T Consensus 125 --a~l~~ll~~~~~~l~~~g~~i~~------------------------KG~-~~~~El--~~a~~~~~~l~~~~~~v~~ 175 (184)
T pfam02527 125 --ASLNELTEWALPLLKPGGYFLAY------------------------KGK-QAEDEI--EELDKACQKLGVEVLFVPS 175 (184)
T ss_pred --CCHHHHHHHHHHHCCCCCEEEEE------------------------CCC-CHHHHH--HHHHHHHHHHCCEEEECCC
T ss_conf --57999999999863889899998------------------------899-989999--9878779982977976489
Q ss_pred E
Q ss_conf 5
Q gi|254780872|r 223 V 223 (254)
Q Consensus 223 ~ 223 (254)
+
T Consensus 176 ~ 176 (184)
T pfam02527 176 L 176 (184)
T ss_pred C
T ss_conf 8
No 117
>pfam06080 DUF938 Protein of unknown function (DUF938). This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.78 E-value=8.3e-08 Score=69.06 Aligned_cols=161 Identities=16% Similarity=0.214 Sum_probs=90.8
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCCCE--EEECCHHHHHH-HHHHHHHCCCC-CCC-CCC
Q ss_conf 99999988651876444588001628885698569999997319816--99521356778-88865310112-111-122
Q gi|254780872|r 45 KYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATV--TGIDPSTKNIA-IAKNHANMKNI-NID-YRV 119 (254)
Q Consensus 45 ~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~~V--~giD~S~~~i~-~Ak~~a~~~~~-~i~-~~~ 119 (254)
+.|.+.+.+.+.. .|.+|||||||||..+..+|+.=-.+ .--|+++..+. +.. .....++ |+. -..
T Consensus 12 ~pIl~vL~~~l~~--------~~~~VLEIaSGTGQHav~fA~~lP~l~WqPSD~~~~~~~sI~a-w~~~~~l~Nl~~P~~ 82 (201)
T pfam06080 12 EPILSVLQSYFAK--------TTERVLEIASGTGQHAVFFAPLLPNLTWQPSDPDPNLRGSIAA-WADQQGLRNLRPPLH 82 (201)
T ss_pred HHHHHHHHHHHCC--------CCCCEEEECCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHH-HHHHCCCCCCCCCEE
T ss_conf 8999999998274--------7885799768726999999987899885158888778999999-987437776688737
Q ss_pred CCCCCCC-----CCCCCHHHHEECCCHHCCC--CHHHHHHHHHHHCCCCCEEEEECC-CCC----CHHHHHHHHHHHHHC
Q ss_conf 1001232-----1115301300124310268--888998888752133321577436-766----024564156554310
Q gi|254780872|r 120 SCAEEIA-----ETDEKFDIILNMEVIEHVD--NIPYFIKTCCSLLLSNGLMFISTI-NRN----LKAMLLAIIGAEYLL 187 (254)
Q Consensus 120 ~~~~~l~-----~~~~~FD~V~~~~vleHv~--d~~~~l~~~~~~LkpgG~liist~-Nr~----~~s~~~~i~~ae~il 187 (254)
-|+.+-+ ...+.||.|+|.+++|=++ ....+++.+.++|+|||.|++--| +++ ..|- .-|- +. |
T Consensus 83 LDv~~~~w~~~~~~~~~~dai~~iN~lHI~pw~~~~~lf~ga~~~L~~gG~l~lYGPF~~~G~~ts~SN--~~FD-~~-L 158 (201)
T pfam06080 83 LDVTRPPWPVEAPAPASYDAIFSINMIHISPWSCVEGLFRGAGRLLPPGGVLYIYGPYNQDGELTSDSN--RDFD-RS-L 158 (201)
T ss_pred EECCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCHH--HHHH-HH-H
T ss_conf 632789987555667660023300257737899999999999998515882687465025997688258--9999-99-9
Q ss_pred CCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEEE
Q ss_conf 46789985712253889999999986983888550
Q gi|254780872|r 188 QWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVG 222 (254)
Q Consensus 188 ~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~g 222 (254)
+- ++ .+|.. -.-++|.++..++||+..+..-
T Consensus 159 r~--~d-p~~Gi-RD~e~v~~lA~~~GL~l~~~~~ 189 (201)
T pfam06080 159 RQ--RD-PEWGI-RDIEDVIALAAAQGLQLVKDVD 189 (201)
T ss_pred HH--CC-CCCCC-CCHHHHHHHHHHCCCCCCCCCC
T ss_conf 85--09-63378-3899999999987997686650
No 118
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.74 E-value=2.7e-08 Score=72.09 Aligned_cols=104 Identities=22% Similarity=0.241 Sum_probs=80.7
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCC-CC-CCCCCCCCCCCCCCCHHHHEEC---CC
Q ss_conf 0162888569856999999731981699521356778888653101121-11-1221001232111530130012---43
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNIN-ID-YRVSCAEEIAETDEKFDIILNM---EV 140 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~-i~-~~~~~~~~l~~~~~~FD~V~~~---~v 140 (254)
.|..|||==||||-++....-+|+.|+|+|++..|++-|+.+.+.-++. .. +...++.++|..+.+||.|+|- +.
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGr 276 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGR 276 (347)
T ss_pred CCCEEECCCCCCCHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 69876457678348888366427567603237999855664156627676168873022127788774235884699871
Q ss_pred HH--CC---CC-HHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 10--26---88-88998888752133321577436
Q gi|254780872|r 141 IE--HV---DN-IPYFIKTCCSLLLSNGLMFISTI 169 (254)
Q Consensus 141 le--Hv---~d-~~~~l~~~~~~LkpgG~liist~ 169 (254)
-. .. .+ ...+|+.+.++||+||.+++.++
T Consensus 277 st~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 277 STKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 00245552899999999999987304848999617
No 119
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.72 E-value=5.2e-08 Score=70.35 Aligned_cols=102 Identities=26% Similarity=0.449 Sum_probs=72.0
Q ss_pred EEEECCCHHHHH--HHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCC-CCCCCCCCCC--CCCCC-CCHHHHEECCCHHC
Q ss_conf 888569856999--999731981699521356778888653101121-1112210012--32111-53013001243102
Q gi|254780872|r 70 ILDLGCGGGLLS--EPMAQMGATVTGIDPSTKNIAIAKNHANMKNIN-IDYRVSCAEE--IAETD-EKFDIILNMEVIEH 143 (254)
Q Consensus 70 VLDiGCG~G~~s--~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~-i~~~~~~~~~--l~~~~-~~FD~V~~~~vleH 143 (254)
++|+|||+|..+ ..+...+..++|+|+++.++..++......... +.+...+... ++... ..||++ +.....|
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVLH 130 (257)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEE-EECCHHH
T ss_conf 588603854689999973578579993688899999998630045663576760421355675666657789-8612344
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 68888998888752133321577436766
Q gi|254780872|r 144 VDNIPYFIKTCCSLLLSNGLMFISTINRN 172 (254)
Q Consensus 144 v~d~~~~l~~~~~~LkpgG~liist~Nr~ 172 (254)
..++...+.++.+.|+|+|.++++..+..
T Consensus 131 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 131 LLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 30289999999987078868999962444
No 120
>pfam03141 DUF248 Putative methyltransferase. Members of this family of hypothetical plant proteins are probably methyltransferases: several of the aligned sequences either match the methyltransferase profile, or contain a SAM-binding motif. A protein from Arabidopsis thaliana contains both. Several family members are described as ankyrin like.
Probab=98.72 E-value=4.6e-09 Score=76.87 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=69.6
Q ss_pred CCEEEECCCHHHHHHHHHHCCCCEE---EECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCC-HHC
Q ss_conf 6288856985699999973198169---952135677888865310112111122100123211153013001243-102
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQMGATVT---GIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEV-IEH 143 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~g~~V~---giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~v-leH 143 (254)
..+||+|||.+-|...|-.++.-.. --|..+.++++| .+.|+..-.-......||++..+||+|-|+-- +..
T Consensus 119 Rt~LDvGCGVASfGayLl~r~vltMS~AP~D~HeaQVQfA----LERGiPA~igvlgT~rLPyPs~sFDm~HCsRC~IpW 194 (506)
T pfam03141 119 RTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFA----LERGVPAMLGVLGTRRLPYPSRSFDMAHCSRCLIPW 194 (506)
T ss_pred EEEEECCCCEECHHHHHHCCCCEEEEECCCCCHHHHHHHH----HHCCCHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCC
T ss_conf 8999768872103777632784588734764118889999----971852566564035358875330124422456741
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 68888998888752133321577436
Q gi|254780872|r 144 VDNIPYFIKTCCSLLLSNGLMFISTI 169 (254)
Q Consensus 144 v~d~~~~l~~~~~~LkpgG~liist~ 169 (254)
..+-..+|-|+-|+|+|||+++.|-+
T Consensus 195 ~~~dG~~LlEvdRvLRPGGYfV~S~p 220 (506)
T pfam03141 195 HANDGILLLEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred CCCCCEEEEEEEHCCCCCCEEEECCC
T ss_conf 04797788654000047866994678
No 121
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.71 E-value=4.1e-08 Score=70.95 Aligned_cols=99 Identities=21% Similarity=0.321 Sum_probs=76.2
Q ss_pred HHCCEEEECCCHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHHCCCCC--CCCCC-CCCCCCCC--CCCCHHHHEE
Q ss_conf 0162888569856999999731---981699521356778888653101121--11122-10012321--1153013001
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNIN--IDYRV-SCAEEIAE--TDEKFDIILN 137 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~---g~~V~giD~S~~~i~~Ak~~a~~~~~~--i~~~~-~~~~~l~~--~~~~FD~V~~ 137 (254)
..++|||||.+.|+-+..||.. ..+++.||.++++.++|+++.++.++. |.... ++.-+... ..++||+|+.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCCCCCEEEE
T ss_conf 98649996352379999999638889769997079899999999999759765289883574799997334788568998
Q ss_pred CCCHHCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 243102688889988887521333215774
Q gi|254780872|r 138 MEVIEHVDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 138 ~~vleHv~d~~~~l~~~~~~LkpgG~liis 167 (254)
-.- =.+...++..+.++|+|||.+++.
T Consensus 139 Dad---K~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 139 DAD---KADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred ECC---HHHCHHHHHHHHHHHCCCCEEEEE
T ss_conf 378---435999999999973789689983
No 122
>PRK04457 spermidine synthase; Provisional
Probab=98.68 E-value=1.1e-07 Score=68.24 Aligned_cols=121 Identities=18% Similarity=0.256 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHC--CCCCCCCC
Q ss_conf 599999998865187644458800162888569856999999731--98169952135677888865310--11211112
Q gi|254780872|r 43 RIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANM--KNINIDYR 118 (254)
Q Consensus 43 R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~--~~~~i~~~ 118 (254)
-++|.+..+...+-.. ..++||-||-|+|.++..+.+. ..++++||+++..|++||.+... ...+++..
T Consensus 50 ~l~Ytr~Mm~~LLf~p-------~Pk~vl~iGLGgGsl~k~~~~~~P~~~i~~VEIdp~Vi~vAr~~F~lP~dd~Rl~V~ 122 (262)
T PRK04457 50 VLSYSRAMMGFLLFNP-------RPQHILQIGLGGGSFAKFIDTYLPDTRQTAVEINPQVIAVARNHFELPFEDEKFEII 122 (262)
T ss_pred HHHHHHHHHHHHHCCC-------CCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 1288999999986589-------978699992570199999998398675899987889999999865799999726999
Q ss_pred CCCCCCCC-CCCCCHHHHEECCCHHCC--C---CHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 21001232-111530130012431026--8---88899888875213332157743676
Q gi|254780872|r 119 VSCAEEIA-ETDEKFDIILNMEVIEHV--D---NIPYFIKTCCSLLLSNGLMFISTINR 171 (254)
Q Consensus 119 ~~~~~~l~-~~~~~FD~V~~~~vleHv--~---d~~~~l~~~~~~LkpgG~liist~Nr 171 (254)
++|..+.. ...++||+|++- ...+. + .-..|++.|+++|+|||.+++-++.+
T Consensus 123 ~~Dg~~fv~~~~~~~DvI~vD-~fd~~g~~~~L~t~~Fy~~c~~~L~~~Gvlv~Nl~~~ 180 (262)
T PRK04457 123 EADGAEYIKVFPASTDVILVD-GFDGEQIVDALVTQPFFRDCRNALSSDGVFVTNLWSG 180 (262)
T ss_pred ECCHHHHHHHCCCCCCEEEEE-CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 553899985486777889996-8898888600082999999998649893999986889
No 123
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.68 E-value=5.4e-08 Score=70.21 Aligned_cols=137 Identities=18% Similarity=0.273 Sum_probs=87.3
Q ss_pred CCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCC
Q ss_conf 62888569856999999731--9816995213567788886531011211112210012321115301300124310268
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVD 145 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~ 145 (254)
.++||+||+.|+-..+|.++ .....||++++.+++.|+.. ... .+..++++.+ +..+.+||+|++.+||-|+.
T Consensus 45 kSilE~GcNIGlNL~ALk~L~P~~~l~gIEIN~~A~~~lk~~--~~~--~~i~n~SIld-~~~~~~~DLv~t~GVLIHin 119 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY--LPN--INIIQGSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH--CCC--CEEEECCCCC-CCCCCCEEEEEEEEEEEEEC
T ss_conf 826896688477699998748744049995399999999865--897--2699653346-67787423899830899978
Q ss_pred --CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHC-CCEEEEEEE
Q ss_conf --88899888875213332157743676602456415655431046789985712253889999999986-983888550
Q gi|254780872|r 146 --NIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAAN-KVKIIDRVG 222 (254)
Q Consensus 146 --d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~-g~~~~~~~g 222 (254)
+...+.++++++-+. =+++..--|.++.+- --+| |. ++....+=-..++++. .++++|- |
T Consensus 120 P~~L~~vy~~l~~~s~k-yili~EYynp~p~~i-------------~YRG-~~-~~LfKrDFa~~~~~~~~~lklvdy-g 182 (204)
T TIGR03587 120 PDNLPTAYRELYRCSNR-YILIAEYYNPSPVEI-------------SYRG-NS-GRLWKRDFAGEMMDRYPDLKLVDY-G 182 (204)
T ss_pred HHHHHHHHHHHHHHHCC-EEEEEEECCCCCEEE-------------EECC-CC-CCEECCCHHHHHHHHCCCCEEEEC-C
T ss_conf 89999999999985205-599999428996467-------------3048-76-843334307999975889579861-3
Q ss_pred EEEC
Q ss_conf 5766
Q gi|254780872|r 223 VVYN 226 (254)
Q Consensus 223 ~~~~ 226 (254)
+.|+
T Consensus 183 F~y~ 186 (204)
T TIGR03587 183 FPYH 186 (204)
T ss_pred EEEE
T ss_conf 1776
No 124
>KOG3987 consensus
Probab=98.67 E-value=2e-08 Score=72.90 Aligned_cols=166 Identities=20% Similarity=0.225 Sum_probs=103.2
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCC
Q ss_conf 01628885698569999997319816995213567788886531011211112210012321115301300124310268
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVD 145 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~ 145 (254)
...++||+|.|.|-.++.++..-..|.+.+.|..|+...+ +.+.++ ..+-+-...+-+||+|.|+++|..-.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~----kk~ynV----l~~~ew~~t~~k~dli~clNlLDRc~ 183 (288)
T KOG3987 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLK----KKNYNV----LTEIEWLQTDVKLDLILCLNLLDRCF 183 (288)
T ss_pred CCEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHH----HCCCCE----EEEHHHHHCCCEEEHHHHHHHHHHHC
T ss_conf 8706886167886100121421899999876699999986----527736----65003331372231588877887506
Q ss_pred CHHHHHHHHHHHCCC-CCEEEEECCCCCCH-HHHHHHHHH--H---HHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEE
Q ss_conf 888998888752133-32157743676602-456415655--4---3104678998571225388999999998698388
Q gi|254780872|r 146 NIPYFIKTCCSLLLS-NGLMFISTINRNLK-AMLLAIIGA--E---YLLQWLPKGTHQYDKFIKPTEMECFLAANKVKII 218 (254)
Q Consensus 146 d~~~~l~~~~~~Lkp-gG~liist~Nr~~~-s~~~~i~~a--e---~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~ 218 (254)
+|-+.|+.+..+|.| +|.++++-.= +. .|.-...++ + .+|.. .| ..|+. .-..+..+++++||.+.
T Consensus 184 ~p~kLL~Di~~vl~psngrvivaLVL--P~~hYVE~N~~g~~~rPdn~Le~--~G-r~~ee--~v~~~~e~lr~~g~~ve 256 (288)
T KOG3987 184 DPFKLLEDIHLVLAPSNGRVIVALVL--PYMHYVETNTSGLPLRPDNLLEN--NG-RSFEE--EVARFMELLRNCGYRVE 256 (288)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEEEE--CCCCEEECCCCCCCCCCHHHHHH--CC-CCHHH--HHHHHHHHHHHCCCHHH
T ss_conf 76779999999846478848999984--24211430789986880688873--58-53899--99889999986370244
Q ss_pred EEEEEEEC---CCCCEEEECCCCCCEEEEEEEECCCC
Q ss_conf 85505766---77775786478864517999975877
Q gi|254780872|r 219 DRVGVVYN---VFCNKWQLSAKNMDVNYMVLGHLPKT 252 (254)
Q Consensus 219 ~~~g~~~~---p~~~~w~~~~~~~~vnY~~~~~kp~~ 252 (254)
.-..+-|- .+.+++++-. | .+..-||++
T Consensus 257 awTrlPYLCEGDm~ns~Y~L~-D-----aifvlkp~~ 287 (288)
T KOG3987 257 AWTRLPYLCEGDMHNSFYWLI-D-----AIFVLKPKT 287 (288)
T ss_pred HHHCCCEECCCCCCCCEEEEC-C-----EEEEECCCC
T ss_conf 551487212566566337722-2-----589955778
No 125
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.67 E-value=5.5e-08 Score=70.21 Aligned_cols=175 Identities=17% Similarity=0.259 Sum_probs=111.6
Q ss_pred CCCCHHHHHHHHHHH---HHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHH--HCCEEEECCCHHHHHHH
Q ss_conf 789889999999998---8746888871267751756599999998865187644458800--16288856985699999
Q gi|254780872|r 9 TTKNQDAINQFSNIA---SEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFK--GLRILDLGCGGGLLSEP 83 (254)
Q Consensus 9 ~t~~~~ei~~F~~~a---~~WwD~~g~~~~Lh~~N~~R~~~I~~~i~~~~~~~~~~~~~l~--g~~VLDiGCG~G~~s~~ 83 (254)
-+++.+.+++|.++. ..| +. .+|-+++.=..+-+.+|+..+.......+ +++++|||+|.|+=..+
T Consensus 14 ~~~~~~~~~~l~~Y~~lL~~w-N~--------~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGip 84 (215)
T COG0357 14 LSVTEEQLEKLEAYVELLLKW-NK--------AYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIP 84 (215)
T ss_pred CCCCHHHHHHHHHHHHHHHHH-HH--------HCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHH
T ss_conf 775599999999999999986-17--------507777798789999999998646650256688799857999973176
Q ss_pred HH--HCCCCEEEECCHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCC
Q ss_conf 97--31981699521356778888653101121-1112210012321115301300124310268888998888752133
Q gi|254780872|r 84 MA--QMGATVTGIDPSTKNIAIAKNHANMKNIN-IDYRVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLS 160 (254)
Q Consensus 84 la--~~g~~V~giD~S~~~i~~Ak~~a~~~~~~-i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d~~~~l~~~~~~Lkp 160 (254)
|| ....+|+-+|...+-+.+-+.-+.+-+++ +.+.++.+|++......||+|+|-.| .+...+..-+..++|+
T Consensus 85 LAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv----a~L~~l~e~~~pllk~ 160 (215)
T COG0357 85 LAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV----ASLNVLLELCLPLLKV 160 (215)
T ss_pred HHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHCCCCCCCCCEEEEEEE----CCHHHHHHHHHHHCCC
T ss_conf 888566881899716750799999999985999749863127660144665758985420----2568899999984346
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 321577436766024564156554310467899857122538899999999869838885505
Q gi|254780872|r 161 NGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVGV 223 (254)
Q Consensus 161 gG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~g~ 223 (254)
||.++.-.. . .+ . +. -.+....+...|+.+..+.-+
T Consensus 161 ~g~~~~~k~---------~-~~------------~--~e---~~e~~~a~~~~~~~~~~~~~~ 196 (215)
T COG0357 161 GGGFLAYKG---------L-AG------------K--DE---LPEAEKAILPLGGQVEKVFSL 196 (215)
T ss_pred CCCCHHHHH---------H-HH------------H--HH---HHHHHHHHHHHCCCEEEEEEE
T ss_conf 883202658---------7-65------------5--56---899999987626817999986
No 126
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=1e-07 Score=68.53 Aligned_cols=115 Identities=24% Similarity=0.406 Sum_probs=85.2
Q ss_pred HHCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-CCC
Q ss_conf 5175659999999886518764445880016288856985699999973198169952135677888865310112-111
Q gi|254780872|r 38 QINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NID 116 (254)
Q Consensus 38 ~~N~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~ 116 (254)
+.|+...+-+.+.+...... ..+.++||.=||.|.|+.++|+...+|+|+|+++.+++.|+.+|+.++. |+.
T Consensus 272 Q~N~~~~ekl~~~a~~~~~~-------~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~ 344 (432)
T COG2265 272 QVNPAVAEKLYETALEWLEL-------AGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVE 344 (432)
T ss_pred EECHHHHHHHHHHHHHHHHC-------CCCCEEEECCCCCCHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEE
T ss_conf 33999999999999999743-------69977999355887013553124657999964899999999999973988779
Q ss_pred CCCCCCCCCCCCC---CCHHHHEECCCHHCCCCH------HHHHHHHHHHCCCCCEEEEEC
Q ss_conf 1221001232111---530130012431026888------899888875213332157743
Q gi|254780872|r 117 YRVSCAEEIAETD---EKFDIILNMEVIEHVDNI------PYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 117 ~~~~~~~~l~~~~---~~FD~V~~~~vleHv~d~------~~~l~~~~~~LkpgG~liist 168 (254)
|..++++++.... ..||.|+. || ..+++.+.+ ++|-.++++|.
T Consensus 345 f~~~~ae~~~~~~~~~~~~d~Vvv--------DPPR~G~~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 345 FIAGDAEEFTPAWWEGYKPDVVVV--------DPPRAGADREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred EEECCHHHHHHHHCCCCCCCEEEE--------CCCCCCCCHHHHHHHHH-CCCCCEEEEEC
T ss_conf 995868888651002579998998--------99999999899999985-58986899976
No 127
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.64 E-value=7.8e-08 Score=69.25 Aligned_cols=59 Identities=25% Similarity=0.305 Sum_probs=52.7
Q ss_pred HCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCC
Q ss_conf 16288856985699999973198169952135677888865310112-111122100123
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEI 125 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l 125 (254)
+..|||+=||+|.++.+||+.+.+|+|||+++.+++-|+.+|+.+++ |++|.+++++++
T Consensus 208 ~~~vlDLYcG~Gtfsl~LA~~~~~V~gVE~~~~aV~~A~~NA~~N~i~N~~fi~~~a~~~ 267 (363)
T PRK05031 208 KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEF 267 (363)
T ss_pred CCCEEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 982898605866426998862687999953899999999999986998649996589999
No 128
>pfam12147 Hydrolase_5 Putative lysophospholipase. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=98.63 E-value=3.4e-07 Score=65.26 Aligned_cols=144 Identities=15% Similarity=0.193 Sum_probs=99.7
Q ss_pred CCEEEECCCHHHHH-HHHHHCC---CCEEEECCHHHHHHHHHHHHHCCCCC-C-CCCCCCCCC---CCCCCCCHHHHEEC
Q ss_conf 62888569856999-9997319---81699521356778888653101121-1-112210012---32111530130012
Q gi|254780872|r 68 LRILDLGCGGGLLS-EPMAQMG---ATVTGIDPSTKNIAIAKNHANMKNIN-I-DYRVSCAEE---IAETDEKFDIILNM 138 (254)
Q Consensus 68 ~~VLDiGCG~G~~s-~~la~~g---~~V~giD~S~~~i~~Ak~~a~~~~~~-i-~~~~~~~~~---l~~~~~~FD~V~~~ 138 (254)
.+||||.||.|.+. ..+.+.+ -+++-=|.|+..++..+..+++.++. | .|.++++-+ +...+-.-++++.+
T Consensus 137 v~ilDIAaG~GRYvldal~~~~~~~~~illRDys~~NV~~G~~li~ergl~~ia~Fe~gdAFd~~~la~l~p~P~l~IVS 216 (311)
T pfam12147 137 VRILDIAAGHGRYVLDALAKAPQRPDSILLRDYSPLNVEQGRALIAERGLEDIARFEQGDAFDPASLAALTPAPTLAIVS 216 (311)
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHEEEEECCCCCHHHHHCCCCCCCEEEEE
T ss_conf 69998516861629999985798874588514888779999999997496200067405767976763269999789970
Q ss_pred CCHHCCCCH---HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCC----CHH-HCCCHHHHHHHH
Q ss_conf 431026888---899888875213332157743676602456415655431046789985----712-253889999999
Q gi|254780872|r 139 EVIEHVDNI---PYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTH----QYD-KFIKPTEMECFL 210 (254)
Q Consensus 139 ~vleHv~d~---~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH----~~~-~Fi~p~el~~~l 210 (254)
++.|-++|- ...|+-+++.+.|||+|+.+. ..+..-+-. |-+-++. | .|- +--+..|+-++.
T Consensus 217 GLyELF~dN~lv~~sl~Gl~~ai~~gGyLIYTg--QPWHPQLe~------IAr~LtS--Hr~G~aWVMRrRsQ~EmD~Lv 286 (311)
T pfam12147 217 GLYELFPDNDLVRRSLAGLAQAVEPGGYLIYTG--QPWHPQLEM------IARALTS--HRGGEAWVMRRRSQAEMDELV 286 (311)
T ss_pred CHHHHCCCHHHHHHHHHHHHHHCCCCCEEEECC--CCCCHHHHH------HHHHHHC--CCCCCCCEEEECCHHHHHHHH
T ss_conf 126636872999999999997508997899829--988667999------9999725--668886767736799999999
Q ss_pred HHCCCEEEEEE
Q ss_conf 98698388855
Q gi|254780872|r 211 AANKVKIIDRV 221 (254)
Q Consensus 211 ~~~g~~~~~~~ 221 (254)
+.+||+-++..
T Consensus 287 ~~aGf~K~~q~ 297 (311)
T pfam12147 287 EAAGFRKIAQR 297 (311)
T ss_pred HHCCCCHHHHE
T ss_conf 98197215550
No 129
>KOG1661 consensus
Probab=98.61 E-value=1.6e-07 Score=67.36 Aligned_cols=97 Identities=21% Similarity=0.283 Sum_probs=73.4
Q ss_pred HHCCEEEECCCHHHHHHHHHHC----CCCEEEECCHHHHHHHHHHHHHCCC-----------CCCCCCCCCCCCCCCCCC
Q ss_conf 0162888569856999999731----9816995213567788886531011-----------211112210012321115
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM----GATVTGIDPSTKNIAIAKNHANMKN-----------INIDYRVSCAEEIAETDE 130 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~----g~~V~giD~S~~~i~~Ak~~a~~~~-----------~~i~~~~~~~~~l~~~~~ 130 (254)
.|.+.||+|.|+|+++.-++++ |..+.|||.-++.++.++++..+.- .++.+..++.........
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a 161 (237)
T KOG1661 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQA 161 (237)
T ss_pred CCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEECCCCCCCCCCC
T ss_conf 47310133787408999999994577766514441599999999877765047304556414864799677623477568
Q ss_pred CHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 30130012431026888899888875213332157743
Q gi|254780872|r 131 KFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 131 ~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist 168 (254)
.||.|.|- ..-....+++-..|+|||.+++-.
T Consensus 162 ~YDaIhvG------Aaa~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661 162 PYDAIHVG------AAASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CCCEEEEC------CCCCCCHHHHHHHHCCCCEEEEEE
T ss_conf 76657876------676224799998634387289861
No 130
>PRK03612 spermidine synthase; Provisional
Probab=98.57 E-value=7.2e-07 Score=63.27 Aligned_cols=96 Identities=21% Similarity=0.240 Sum_probs=71.9
Q ss_pred HCCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHH--HC------CCCCCCCCCCCCCCC-CCCCCCHHHH
Q ss_conf 1628885698569999997319--81699521356778888653--10------112111122100123-2111530130
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHA--NM------KNINIDYRVSCAEEI-AETDEKFDII 135 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a--~~------~~~~i~~~~~~~~~l-~~~~~~FD~V 135 (254)
-++||=+|-|.|..+..+-+.. .+|+-+|+.+++++.||++. .+ ....++....|+-.. ...+++||+|
T Consensus 294 p~~VLiiGGGdG~a~revLk~~~ve~v~lVelD~~vv~lar~~~~l~~~n~~a~~DpRv~v~~~Da~~~l~~~~~~yDvI 373 (516)
T PRK03612 294 ARRVLILGGGDGLALREVLKYPDVEQVTLVDLDPAVTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLPETFDAI 373 (516)
T ss_pred CCEEEEECCCCCHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEHHHHHHHHHCCCCCCEE
T ss_conf 77389983776087999864899663789951889999998572144441232349964898537899998688878889
Q ss_pred EECCCHHCCCCH----------HHHHHHHHHHCCCCCEEEEE
Q ss_conf 012431026888----------89988887521333215774
Q gi|254780872|r 136 LNMEVIEHVDNI----------PYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 136 ~~~~vleHv~d~----------~~~l~~~~~~LkpgG~liis 167 (254)
++- .+|| ..|.+.+++.|+|||.++..
T Consensus 374 i~D-----~pdP~~~~~~~LYs~eFY~~~~~~L~~~G~~v~q 410 (516)
T PRK03612 374 IVD-----LPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 410 (516)
T ss_pred EEE-----CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 981-----8997995224675399999999844999589993
No 131
>KOG3191 consensus
Probab=98.57 E-value=7.8e-07 Score=63.06 Aligned_cols=121 Identities=19% Similarity=0.285 Sum_probs=79.6
Q ss_pred CCEEEECCCHHHHHHHHHHC-C--CCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCC
Q ss_conf 62888569856999999731-9--81699521356778888653101121111221001232111530130012431026
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQM-G--ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHV 144 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~-g--~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv 144 (254)
+-+||||||+|..+..|+.. + +-..++|+++.+++..+.-|+.++.+++..+.+..+-. ..++-|+++..-- +|
T Consensus 45 ~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l-~~~~VDvLvfNPP--YV 121 (209)
T KOG3191 45 EICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL-RNESVDVLVFNPP--YV 121 (209)
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHH-CCCCCCEEEECCC--CC
T ss_conf 05899348846599999974177716999549989998879999855775205652577663-3277308997899--67
Q ss_pred CC-----------------------HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCC
Q ss_conf 88-----------------------8899888875213332157743676602456415655431046789985712253
Q gi|254780872|r 145 DN-----------------------IPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFI 201 (254)
Q Consensus 145 ~d-----------------------~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi 201 (254)
+. ...++..+-.+|.|.|.+++-++-+|
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N----------------------------- 172 (209)
T KOG3191 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN----------------------------- 172 (209)
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHC-----------------------------
T ss_conf 698544206778888745754178999887640444286743776301305-----------------------------
Q ss_pred CHHHHHHHHHHCCCEEEEE
Q ss_conf 8899999999869838885
Q gi|254780872|r 202 KPTEMECFLAANKVKIIDR 220 (254)
Q Consensus 202 ~p~el~~~l~~~g~~~~~~ 220 (254)
.|+|+..+++.-||.+.-.
T Consensus 173 ~p~ei~k~l~~~g~~~~~~ 191 (209)
T KOG3191 173 KPKEILKILEKKGYGVRIA 191 (209)
T ss_pred CHHHHHHHHHHCCCCEEEE
T ss_conf 9799999874336530688
No 132
>TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process.
Probab=98.56 E-value=8.9e-08 Score=68.90 Aligned_cols=95 Identities=18% Similarity=0.260 Sum_probs=71.1
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCC---CEEEECCHHHHHHHHHHHHHC-----CCC-CCCCCCCCCCCCCCCCCCHHHHE
Q ss_conf 016288856985699999973198---169952135677888865310-----112-11112210012321115301300
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGA---TVTGIDPSTKNIAIAKNHANM-----KNI-NIDYRVSCAEEIAETDEKFDIIL 136 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~---~V~giD~S~~~i~~Ak~~a~~-----~~~-~i~~~~~~~~~l~~~~~~FD~V~ 136 (254)
.+.+|||||||+|+.+.-||.+-. .|.+|+==++....|+++.++ -+. ||..+.+|-..=-.....||.|+
T Consensus 82 ~~~~vLeiG~GSGY~aavlA~~v~~~G~V~SiEri~~L~~~A~~~Lk~hhseqL~~~NV~v~~GDG~~G~~~~APYd~I~ 161 (228)
T TIGR00080 82 PGAKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELVEKARRRLKKHHSEQLGLDNVIVIEGDGRQGWEEKAPYDAIL 161 (228)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCEEE
T ss_conf 03556650478558999999987139718998535788999998765431444068865899778865710248835277
Q ss_pred ECCCHHCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 124310268888998888752133321577
Q gi|254780872|r 137 NMEVIEHVDNIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 137 ~~~vleHv~d~~~~l~~~~~~LkpgG~lii 166 (254)
....= +.+=+.+-+-|+.||+|++
T Consensus 162 ~~AA~------k~iP~AL~~QL~eGG~L~~ 185 (228)
T TIGR00080 162 VTAAA------KEIPKALIDQLEEGGILVL 185 (228)
T ss_pred EECCC------CCCCHHHHHHHHHCCEEEE
T ss_conf 52378------9876578999972898862
No 133
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=98.52 E-value=4.7e-07 Score=64.39 Aligned_cols=119 Identities=19% Similarity=0.267 Sum_probs=78.3
Q ss_pred HHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCC-CCEEEECCHHHHHHHHHHHHHCCCCCCC-CCCCCCC-
Q ss_conf 999988651876444588001628885698569999997319-8169952135677888865310112111-1221001-
Q gi|254780872|r 47 IQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMG-ATVTGIDPSTKNIAIAKNHANMKNINID-YRVSCAE- 123 (254)
Q Consensus 47 I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g-~~V~giD~S~~~i~~Ak~~a~~~~~~i~-~~~~~~~- 123 (254)
+++.+...+... ..++|.++||+=||+|.++.....+| .+|+.||.+..+++..+.+++.-+.+-. +...+..
T Consensus 28 vrEalFniL~~~----~~i~~~~~LDLFaGSGslglEAlSRGA~~v~fvE~~~~a~~~i~~N~~~l~~~~~~~~~~~~~~ 103 (181)
T pfam03602 28 VREALFNILAPY----FELGGARVLDLFAGSGALGLEALSRGASSVVFVEKDKKAVATLKENLEALGLEGAVLRMDAARA 103 (181)
T ss_pred HHHHHHHHHCCC----CCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 999999750134----5548987998278726989999976998899996999999999999998589977998108999
Q ss_pred --CCCCCCCCHHHHEECCCHHCCCCHHHHHHHHH--HHCCCCCEEEEECCC
Q ss_conf --23211153013001243102688889988887--521333215774367
Q gi|254780872|r 124 --EIAETDEKFDIILNMEVIEHVDNIPYFIKTCC--SLLLSNGLMFISTIN 170 (254)
Q Consensus 124 --~l~~~~~~FD~V~~~~vleHv~d~~~~l~~~~--~~LkpgG~liist~N 170 (254)
.+....++||+|++-=-. .......++..+. .+|+++|.+++.+.-
T Consensus 104 ~~~~~~~~~~fdiIF~DPPY-~~~~~~~~l~~l~~~~~l~~~~iiiiE~~~ 153 (181)
T pfam03602 104 LLRLAGKGPPFDLVFLDPPY-AKGLIEEALELLAEKGWLNPNALIVVETES 153 (181)
T ss_pred HHHHCCCCCCCCEEECCCCC-CCHHHHHHHHHHHHCCCCCCCEEEEEEECC
T ss_conf 98753357888766359975-420699999999966665798099999668
No 134
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.52 E-value=1.7e-07 Score=67.18 Aligned_cols=110 Identities=20% Similarity=0.262 Sum_probs=81.4
Q ss_pred CCCHHHCCEEEECCCHHHHHHHHHHCCC-CEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCC
Q ss_conf 5880016288856985699999973198-169952135677888865310112111122100123211153013001243
Q gi|254780872|r 62 THPFKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEV 140 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG~G~~s~~la~~g~-~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~v 140 (254)
..-..|++|||+|.|.|+.+.+.++.|+ .|+..|+.+..+.-.+.+++.++++|.+...+. ...+..||+|...++
T Consensus 75 PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~---~g~~~~~Dl~LagDl 151 (218)
T COG3897 75 PETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADL---IGSPPAFDLLLAGDL 151 (218)
T ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCEEEEEECCC---CCCCCCEEEEEEECE
T ss_conf 63103653244156667088999985037887627884788885306221562167743133---689864038985030
Q ss_pred HHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCH
Q ss_conf 1026888899888875213332157743676602
Q gi|254780872|r 141 IEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLK 174 (254)
Q Consensus 141 leHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~ 174 (254)
+..-+.-...+.-..++...|-.+++-+|-|..+
T Consensus 152 fy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 152 FYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred ECCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 0283588988999999985797799728997778
No 135
>KOG1331 consensus
Probab=98.50 E-value=9.3e-08 Score=68.77 Aligned_cols=95 Identities=23% Similarity=0.274 Sum_probs=73.1
Q ss_pred HCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCC
Q ss_conf 16288856985699999973198169952135677888865310112111122100123211153013001243102688
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVDN 146 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d 146 (254)
|.-+||+|||.|-.... .-...+.|.|.+...+..||. .+.. ....+++-.+|..+.+||.+.+..|+||+.-
T Consensus 46 gsv~~d~gCGngky~~~--~p~~~~ig~D~c~~l~~~ak~----~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331 46 GSVGLDVGCGNGKYLGV--NPLCLIIGCDLCTGLLGGAKR----SGGD-NVCRADALKLPFREESFDAALSIAVIHHLST 118 (293)
T ss_pred CCEEEECCCCCCCCCCC--CCCCEEEECCHHHHHCCCCCC----CCCC-EEEHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 64045424687655767--986315403022322053334----7986-2561244428987876000323354444436
Q ss_pred ---HHHHHHHHHHHCCCCCEEEEEC
Q ss_conf ---8899888875213332157743
Q gi|254780872|r 147 ---IPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 147 ---~~~~l~~~~~~LkpgG~liist 168 (254)
...+++++.|+|+|||...+..
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331 119 RERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 7789999999998726788568998
No 136
>pfam00891 Methyltransf_2 O-methyltransferase. This family includes a range of O-methyltransferases. These enzymes utilize S-adenosyl methionine.
Probab=98.49 E-value=4.2e-07 Score=64.74 Aligned_cols=92 Identities=20% Similarity=0.211 Sum_probs=70.4
Q ss_pred CCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCC
Q ss_conf 62888569856999999731--9816995213567788886531011211112210012321115301300124310268
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVD 145 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~ 145 (254)
.+|+|||.|.|.++..+++. +.+++-.|. +..++.|+. ...+++..++.-+ +.+ .-|+++...|||+.+
T Consensus 103 ~~vvDvGGG~G~~~~~i~~~~P~l~~~v~Dl-p~v~~~a~~-----~~rv~~~~gdff~-~~P--~aD~y~l~~vLH~w~ 173 (239)
T pfam00891 103 SSLVDVGGGTGALAAAIVRAYPHIKGIVFDL-PHVIADAPS-----ADRVEFVGGDFFE-SVP--EADAILLKWVLHDWS 173 (239)
T ss_pred CEEEEECCCCHHHHHHHHHHCCCCEEEEEEC-HHHHHHCCC-----CCCEEEECCCCCC-CCC--CCCEEEEEHHHCCCC
T ss_conf 7689967981899999999889983898646-877862764-----6854884487777-888--851776401431599
Q ss_pred CH--HHHHHHHHHHCCCCCEEEEEC
Q ss_conf 88--899888875213332157743
Q gi|254780872|r 146 NI--PYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 146 d~--~~~l~~~~~~LkpgG~liist 168 (254)
|. ..+|++|++.|+|||.++|.-
T Consensus 174 d~~~~~iL~~~~~al~~~grllI~e 198 (239)
T pfam00891 174 DEDCVKILKRCYEALPPGGKVIVVE 198 (239)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 9999999999999779998899997
No 137
>pfam09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria.
Probab=98.49 E-value=1.7e-06 Score=61.02 Aligned_cols=103 Identities=20% Similarity=0.178 Sum_probs=66.8
Q ss_pred HHHCCEEEECCCHHHHHHHHHHC-C--CCEEEECCHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCHHHHEECC
Q ss_conf 00162888569856999999731-9--8169952135677888865310112111--12210012321115301300124
Q gi|254780872|r 65 FKGLRILDLGCGGGLLSEPMAQM-G--ATVTGIDPSTKNIAIAKNHANMKNINID--YRVSCAEEIAETDEKFDIILNME 139 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s~~la~~-g--~~V~giD~S~~~i~~Ak~~a~~~~~~i~--~~~~~~~~l~~~~~~FD~V~~~~ 139 (254)
+...+|||+|+|+|.-+.+.... + .+++.||.|+.|.++++.-++. ..+.. ....+..........+|+|++..
T Consensus 33 f~P~slLD~GsGpGt~~wAa~~~w~~l~~~~~vd~s~~m~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~DLVi~sy 111 (275)
T pfam09243 33 FAPLSHLDVGAGPGTALWAASELWPGLEPATVIDASEAALAIGEELARH-IPALKHAWRARDVIGAALDFEPADLVTISY 111 (275)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHC-CCCCCCCEECCCCCCCCCCCCCCCEEEEEC
T ss_conf 9987577727757999999998842476899974899999999999851-843454311143101124589878899614
Q ss_pred CHHCCCC--HHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 3102688--889988887521333215774367
Q gi|254780872|r 140 VIEHVDN--IPYFIKTCCSLLLSNGLMFISTIN 170 (254)
Q Consensus 140 vleHv~d--~~~~l~~~~~~LkpgG~liist~N 170 (254)
+|-.+.+ ...+++++.+.+. |.|++--+.
T Consensus 112 ~L~El~~~~R~~~v~~LW~~~~--g~LVlVEpG 142 (275)
T pfam09243 112 VLDELTPASREKVIDNLWAKAA--QALVIVEPG 142 (275)
T ss_pred HHCCCCHHHHHHHHHHHHHHCC--CEEEEEECC
T ss_conf 2207997899999999999539--979999189
No 138
>PRK00811 spermidine synthase; Provisional
Probab=98.46 E-value=5.8e-07 Score=63.82 Aligned_cols=98 Identities=14% Similarity=0.280 Sum_probs=72.1
Q ss_pred HHCCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHC------CCCCCCCCCCCCCCCC-CCCCCHHHHE
Q ss_conf 01628885698569999997319--8169952135677888865310------1121111221001232-1115301300
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANM------KNINIDYRVSCAEEIA-ETDEKFDIIL 136 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~------~~~~i~~~~~~~~~l~-~~~~~FD~V~ 136 (254)
+.++||=||-|.|..+..+.+.. -+|+.||+.+..++.++++... ...+++...+|.-.+. ...++||+|+
T Consensus 78 ~pk~VLIiGGGDGg~~rE~lkh~~v~~v~~VeiD~~Vi~~~~~~lp~~~~~~~~dprv~~~~~Dg~~fv~~~~~~yDvII 157 (283)
T PRK00811 78 NPKKVLIIGGGDGGTLREVLKHPSVEKITMVEIDERVVEMSRKYLPEISGGAWDDPRVELVIGDGVKFVRETENSFDVII 157 (283)
T ss_pred CCCEEEEECCCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCCEEE
T ss_conf 97748995687479999984278856799994689999999998388631330297159982789999984523554899
Q ss_pred ECCCHHCCCCH---------HHHHHHHHHHCCCCCEEEEEC
Q ss_conf 12431026888---------899888875213332157743
Q gi|254780872|r 137 NMEVIEHVDNI---------PYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 137 ~~~vleHv~d~---------~~~l~~~~~~LkpgG~liist 168 (254)
+- .+|| ..+++.|++.|+|+|.++...
T Consensus 158 ~D-----~tDP~gpa~~Lft~~Fy~~~~~~L~~~Gi~v~Q~ 193 (283)
T PRK00811 158 VD-----STDPVGPAEGLFTKEFYENCKRALKEGGIFVAQS 193 (283)
T ss_pred EE-----CCCCCCHHHHHCCHHHHHHHHHHCCCCCEEEECC
T ss_conf 80-----8998864455345999999998539995899927
No 139
>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Probab=98.44 E-value=4.5e-07 Score=64.50 Aligned_cols=58 Identities=28% Similarity=0.326 Sum_probs=51.9
Q ss_pred CCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCC
Q ss_conf 6288856985699999973198169952135677888865310112-111122100123
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEI 125 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l 125 (254)
..|||+=||.|.++.+||+.+.+|+|||+++.+++-|+.+|+.+++ |++|..++++++
T Consensus 199 ~~vlDlYcG~Gtfsl~lA~~~~~V~GvE~~~~AV~~A~~Na~~N~i~Nv~f~~~~~~~~ 257 (353)
T pfam05958 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred CCEEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 95899846888888999864787999962599999999989986998649997289999
No 140
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.42 E-value=1.8e-06 Score=60.86 Aligned_cols=99 Identities=21% Similarity=0.162 Sum_probs=73.2
Q ss_pred HHHCCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCC--CCCCCHHHHEECC
Q ss_conf 001628885698569999997319--8169952135677888865310112-1111221001232--1115301300124
Q gi|254780872|r 65 FKGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIA--ETDEKFDIILNME 139 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~--~~~~~FD~V~~~~ 139 (254)
-+.+-+||||-|.|.....+|+.. ....|+|+=.+-+...-..+.+.++ ||....+++..+. .++.++|.|+.+
T Consensus 343 ~k~kv~LEIGFG~Ge~L~~~A~~nP~~~fIG~Evy~nGva~ll~~i~~~~l~Niri~~~D~~~ll~~lp~~sld~i~il- 421 (503)
T PRK01544 343 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL- 421 (503)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCEEEEE-
T ss_conf 5670899953698799999999689888899940656699999999986997599873359999985662040416787-
Q ss_pred CHHCCCCH-------------HHHHHHHHHHCCCCCEEEEEC
Q ss_conf 31026888-------------899888875213332157743
Q gi|254780872|r 140 VIEHVDNI-------------PYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 140 vleHv~d~-------------~~~l~~~~~~LkpgG~liist 168 (254)
.||| ..++..+++.|||||.+.++|
T Consensus 422 ----fPDPWpKkRH~KRRli~~efl~~l~~~Lk~~G~l~~aT 459 (503)
T PRK01544 422 ----FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 459 (503)
T ss_pred ----CCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCEEEEEC
T ss_conf ----89999755322001779999999999714698899976
No 141
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.41 E-value=9.3e-07 Score=62.58 Aligned_cols=98 Identities=19% Similarity=0.275 Sum_probs=73.4
Q ss_pred CCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCC-----CCCCCCCCCCCCCCC-CCCCHHHHEECC
Q ss_conf 628885698569999997319--816995213567788886531011-----211112210012321-115301300124
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKN-----INIDYRVSCAEEIAE-TDEKFDIILNME 139 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~-----~~i~~~~~~~~~l~~-~~~~FD~V~~~~ 139 (254)
++||-||-|.|..+..+.+.. .+++.||+.++.++.||++..... ..++.+.+|.-+... ..++||+|++-
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D- 156 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD- 156 (282)
T ss_pred CEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCEEEEC-
T ss_conf 7699988976699999983688433799970889999999866675433579736899610799987488767789985-
Q ss_pred CHHCCCCH------HHHHHHHHHHCCCCCEEEEE
Q ss_conf 31026888------89988887521333215774
Q gi|254780872|r 140 VIEHVDNI------PYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 140 vleHv~d~------~~~l~~~~~~LkpgG~liis 167 (254)
+-..+ -| ..|++.|++.|+|+|.++.-
T Consensus 157 ~tdp~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 157 STDPV-GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCCC-CCCCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 88998-8430237799999999862889689994
No 142
>PRK01581 speE spermidine synthase; Validated
Probab=98.41 E-value=2.2e-06 Score=60.24 Aligned_cols=137 Identities=15% Similarity=0.204 Sum_probs=89.6
Q ss_pred HCCEEEECCCHHHHHHHHHHC-C-CCEEEECCHHHHHHHHHHHHHCCC--------CCCCCCCCCCCC-CCCCCCCHHHH
Q ss_conf 162888569856999999731-9-816995213567788886531011--------211112210012-32111530130
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQM-G-ATVTGIDPSTKNIAIAKNHANMKN--------INIDYRVSCAEE-IAETDEKFDII 135 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~~-g-~~V~giD~S~~~i~~Ak~~a~~~~--------~~i~~~~~~~~~-l~~~~~~FD~V 135 (254)
..+||=+|.|.|+.+..+-+. . .+|+-||+.+.|++.|+.+..... ..++....|+-. +....+.||+|
T Consensus 140 ~~rVLILGGGDGLAlREVLKyp~Ve~VTLVDLDP~mt~Lar~~p~L~~LN~~AL~DPRV~Vvn~DAf~wL~~~~~~FDvI 219 (363)
T PRK01581 140 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMIDMARNVPELVSLNKSAFFDNRVNTHVCDAKEFLSSPSSLYDVI 219 (363)
T ss_pred CCEEEEEECCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCCCCCEE
T ss_conf 77389980764399999871798562789956999999875197998751200149804999210899986167544289
Q ss_pred EECCCHHCCCCHH----------HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHH
Q ss_conf 0124310268888----------998888752133321577436766024564156554310467899857122538899
Q gi|254780872|r 136 LNMEVIEHVDNIP----------YFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTE 205 (254)
Q Consensus 136 ~~~~vleHv~d~~----------~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~e 205 (254)
+. -+|||. .|..-++++|.|+|.+++..- ++ | |-..-|++
T Consensus 220 IV-----DlPDP~n~~L~KLYS~eFY~Ll~~~La~dG~~vVQST--SP--y------------------fApkaFWs--- 269 (363)
T PRK01581 220 II-----DFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN--SP--A------------------DAPLVYWS--- 269 (363)
T ss_pred EE-----ECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC--CC--C------------------CCCCCEEE---
T ss_conf 99-----5899986246667359999999986198853999607--97--6------------------57623367---
Q ss_pred HHHHHHHCCCEEEEEEEEEECCCCC-EEEEC
Q ss_conf 9999998698388855057667777-57864
Q gi|254780872|r 206 MECFLAANKVKIIDRVGVVYNVFCN-KWQLS 235 (254)
Q Consensus 206 l~~~l~~~g~~~~~~~g~~~~p~~~-~w~~~ 235 (254)
+.+-++.+||.+.... .+-|-++ .|.++
T Consensus 270 I~~Tl~aAGl~t~pYH--v~VPSFG~eWGF~ 298 (363)
T PRK01581 270 IGNTIEHAGLTVKSYH--TIVPSFGTDWGFH 298 (363)
T ss_pred HHHHHHHCCCCCCCCE--ECCCCCCCCCCCE
T ss_conf 7777987367541342--0688886434611
No 143
>TIGR00138 gidB methyltransferase GidB; InterPro: IPR003682 GidB (glucose-inhibited division protein B) appears to be present and in a single copy in all complete eubacterial genomes so far. Its mode of action is unknown, but a methytransferase fold is reported from the crystal structure. It may be a family of bacterial glucose inhibited division proteins that are involved in the regulation of cell division .; GO: 0007049 cell cycle.
Probab=98.37 E-value=1.6e-06 Score=61.06 Aligned_cols=124 Identities=20% Similarity=0.366 Sum_probs=81.4
Q ss_pred HCHHHHHHHHHHHHHHCCCCCCCCCCHH-------HCCEEEECCCHHHHHHHHH---HCCCCEEEECCHHHHHHHHHHHH
Q ss_conf 1756599999998865187644458800-------1628885698569999997---31981699521356778888653
Q gi|254780872|r 39 INPVRIKYIQDKIMQHFQCKSDDTHPFK-------GLRILDLGCGGGLLSEPMA---QMGATVTGIDPSTKNIAIAKNHA 108 (254)
Q Consensus 39 ~N~~R~~~I~~~i~~~~~~~~~~~~~l~-------g~~VLDiGCG~G~~s~~la---~~g~~V~giD~S~~~i~~Ak~~a 108 (254)
+|-++..=..+-+.+|+..+......++ +.+++|||+|+|+=..+|+ .--.+++-+|.+.+=+.+-++-.
T Consensus 15 ~NLT~~~~~~~~~~~h~lDSl~~~~~~~~~~~~r~~~~~~DiGSG~GfPGipL~Ci~~p~~~~~Lles~~KK~~FL~~v~ 94 (197)
T TIGR00138 15 YNLTSIKTPEEIIQRHLLDSLKLLELFDISKNQRTGKKVIDIGSGAGFPGIPLACILRPELKLTLLESNKKKVNFLKEVK 94 (197)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 45754167167877640222433000024566663312677347897145653422057642898427740689999999
Q ss_pred HCCCC-CCCCCCCCCCCC--CCCCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 10112-111122100123--21115301300124310268888998888752133321577
Q gi|254780872|r 109 NMKNI-NIDYRVSCAEEI--AETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 109 ~~~~~-~i~~~~~~~~~l--~~~~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~lii 166 (254)
.+-++ |+...++.+|+. .....+||+|+|-.+. ....++.-+..++|+||.+++
T Consensus 95 ~~L~L~N~~i~~~R~E~~g~~~~~~~~D~~~~RAl~----~l~~~~e~~~~L~~~~G~~~~ 151 (197)
T TIGR00138 95 KELGLNNVEILNGRVEDLGSKQHEEQFDVITSRALV----SLNELLELTLPLLKVGGYFLA 151 (197)
T ss_pred HHHCCCCCHHEEHHHHHCCCCCCCCCCCEEEECCCH----HHHHHHHHHHHCCCCCCEEEE
T ss_conf 983899824200112550554533357878980310----246888866303788978999
No 144
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.36 E-value=1.7e-06 Score=60.87 Aligned_cols=120 Identities=12% Similarity=0.076 Sum_probs=80.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCC-CEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCC
Q ss_conf 999999886518764445880016288856985699999973198-169952135677888865310112-111122100
Q gi|254780872|r 45 KYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCA 122 (254)
Q Consensus 45 ~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~-~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~ 122 (254)
+-+++.+...+.. .++|.+|||+=||+|.+......+|| .|+.||.+..++...+.++...+. ++...+.++
T Consensus 37 drvREalFn~L~~------~i~~~~vLDLFAGSGalGlEALSRGA~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~da 110 (198)
T PRK10909 37 DRVRETLFNWLAP------VIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVSQQLIKNLATLKAGNARVVNTNA 110 (198)
T ss_pred HHHHHHHHHHHHH------HCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHH
T ss_conf 8899999987576------4299879982777468899999879978999978999999999999984888679995569
Q ss_pred CC-CCCCCCCHHHHEECCCHHCCCCHHHHHHHH--HHHCCCCCEEEEECCCC
Q ss_conf 12-321115301300124310268888998888--75213332157743676
Q gi|254780872|r 123 EE-IAETDEKFDIILNMEVIEHVDNIPYFIKTC--CSLLLSNGLMFISTINR 171 (254)
Q Consensus 123 ~~-l~~~~~~FD~V~~~~vleHv~d~~~~l~~~--~~~LkpgG~liist~Nr 171 (254)
.. +....+.||+|++-=-.. -......++.+ ..+|+++|.+++.+..+
T Consensus 111 ~~~L~~~~~~fDlIF~DPPY~-~~~~~~~l~~l~~~~~L~~~gliiiE~~~~ 161 (198)
T PRK10909 111 LSFLAQPGTPHNVVFVDPPFR-KGLLEETINLLEQNGWLADDALIYVESEVE 161 (198)
T ss_pred HHHHHCCCCCEEEEEECCCCC-CCHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 998625599521899899976-555999999999888918996999995488
No 145
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=1.2e-05 Score=55.60 Aligned_cols=175 Identities=15% Similarity=0.181 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCC-CEEEECCHHHHHHHHHHHHHCCCCCC-CCCCC
Q ss_conf 59999999886518764445880016288856985699999973198-16995213567788886531011211-11221
Q gi|254780872|r 43 RIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNINI-DYRVS 120 (254)
Q Consensus 43 R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~-~V~giD~S~~~i~~Ak~~a~~~~~~i-~~~~~ 120 (254)
|-.|=.....++|... .+|+.+||||..||-|+.-+.++|| .|+|||.+.+.+..- -..+..+ .+...
T Consensus 62 RG~~KL~~ale~F~l~------~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k----LR~d~rV~~~E~t 131 (245)
T COG1189 62 RGGLKLEKALEEFELD------VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK----LRNDPRVIVLERT 131 (245)
T ss_pred CHHHHHHHHHHHCCCC------CCCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCCCHH----HHCCCCEEEEECC
T ss_conf 1899999999964868------89978998267876299999875874799997037743786----7359847998527
Q ss_pred CCCCCCC--CCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEEC-CCCCCHHHHHHHHHHHHH--CCCCC-CCC
Q ss_conf 0012321--11530130012431026888899888875213332157743-676602456415655431--04678-998
Q gi|254780872|r 121 CAEEIAE--TDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIST-INRNLKAMLLAIIGAEYL--LQWLP-KGT 194 (254)
Q Consensus 121 ~~~~l~~--~~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist-~Nr~~~s~~~~i~~ae~i--l~~~P-~gt 194 (254)
++..+.. ..+.-|+++|---+ -....+|..+..+++|+|.++.-. |. +-.+ -+.+ -|+++ +..
T Consensus 132 N~r~l~~~~~~~~~d~~v~DvSF---ISL~~iLp~l~~l~~~~~~~v~LvKPQ-----FEag---r~~v~kkGvv~d~~~ 200 (245)
T COG1189 132 NVRYLTPEDFTEKPDLIVIDVSF---ISLKLILPALLLLLKDGGDLVLLVKPQ-----FEAG---REQVGKKGVVRDPKL 200 (245)
T ss_pred CHHHCCHHHCCCCCCEEEEEEEH---HHHHHHHHHHHHHCCCCCEEEEEECCH-----HHHH---HHHCCCCCEECCCCH
T ss_conf 83118987817677847996423---319988899997427886389973655-----5540---432276863448015
Q ss_pred CCHHHCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEECCCCCCEEEEEEEECCC
Q ss_conf 571225388999999998698388855057667777578647886451799997587
Q gi|254780872|r 195 HQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNKWQLSAKNMDVNYMVLGHLPK 251 (254)
Q Consensus 195 H~~~~Fi~p~el~~~l~~~g~~~~~~~g~~~~p~~~~w~~~~~~~~vnY~~~~~kp~ 251 (254)
| ...+ .++.+++++.||++..+ .++|+.+. .-++.|+.+.+|..
T Consensus 201 ~--~~v~--~~i~~~~~~~g~~~~gl---~~Spi~G~------~GNiE~l~~~~k~~ 244 (245)
T COG1189 201 H--AEVL--SKIENFAKELGFQVKGL---IKSPIKGG------KGNIEFLLLLKKSG 244 (245)
T ss_pred H--HHHH--HHHHHHHHHCCCEEEEE---ECCCCCCC------CCCEEEEEEEECCC
T ss_conf 8--9999--99998886459578655---72677678------78675624110368
No 146
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.34 E-value=2.4e-06 Score=60.00 Aligned_cols=136 Identities=18% Similarity=0.167 Sum_probs=89.8
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHH--HHHHH----HC-------CCCCCCCCCCCCCCCCCC-CCC
Q ss_conf 01628885698569999997319816995213567788--88653----10-------112111122100123211-153
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAI--AKNHA----NM-------KNINIDYRVSCAEEIAET-DEK 131 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~--Ak~~a----~~-------~~~~i~~~~~~~~~l~~~-~~~ 131 (254)
+|.+||==|||.+.-...|++.|++|+|||+|+.+++. +.... .. ...+|+..++|+-++... -+.
T Consensus 37 ~~~rVlVPlCGKs~Dm~wLa~~G~~VvGvEls~~Av~~ff~e~~l~~~~~~~~~~~~y~~~~i~i~~gDfF~L~~~~~g~ 116 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQVRQSGEFEHYQAGEISLYCGDFFALTAADLAD 116 (218)
T ss_pred CCCEEEEECCCCHHHHHHHHHCCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCHHHCCC
T ss_conf 89869994898677699998489726998352999999999738986301367603775388279966420278635477
Q ss_pred HHHHEECCCHHCCC--CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHH
Q ss_conf 01300124310268--8889988887521333215774367660245641565543104678998571225388999999
Q gi|254780872|r 132 FDIILNMEVIEHVD--NIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECF 209 (254)
Q Consensus 132 FD~V~~~~vleHv~--d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~ 209 (254)
||.|+=-..|--++ ......+.+.++|+|||..++-|+.-+.. .+.- |+ --++++|+.++
T Consensus 117 ~DaIyDRaal~ALpp~~R~~Y~~~l~~ll~~g~~~LLitl~Y~q~-----------~~~G-PP------Fsv~~~Ev~~l 178 (218)
T PRK13255 117 VDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQE-----------ELAG-PP------FSVSDEEVEAL 178 (218)
T ss_pred CCEEEECCCEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC-----------CCCC-CC------CCCCHHHHHHH
T ss_conf 488997538012898999999999998649987489999862765-----------5689-69------98999999998
Q ss_pred HHHCCCEEEEE
Q ss_conf 99869838885
Q gi|254780872|r 210 LAANKVKIIDR 220 (254)
Q Consensus 210 l~~~g~~~~~~ 220 (254)
... .|++.-+
T Consensus 179 y~~-~~~i~~L 188 (218)
T PRK13255 179 FAG-DFEIELL 188 (218)
T ss_pred HCC-CCEEEEE
T ss_conf 437-8679997
No 147
>pfam01189 Nol1_Nop2_Fmu NOL1/NOP2/sun family.
Probab=98.31 E-value=1.8e-06 Score=60.73 Aligned_cols=107 Identities=23% Similarity=0.285 Sum_probs=74.9
Q ss_pred CCCHHHCCEEEECCCHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCC--CCCCCHHHH
Q ss_conf 58800162888569856999999731---98169952135677888865310112-1111221001232--111530130
Q gi|254780872|r 62 THPFKGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIA--ETDEKFDII 135 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG~G~~s~~la~~---g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~--~~~~~FD~V 135 (254)
..|..|.+|||..+|.|--+.+++.+ ...|+++|.++.-++..+.++...+. ++.....+..... ...+.||.|
T Consensus 80 L~p~~g~~VLD~CAaPGgKt~~la~l~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~~~~~~~d~~~~~~~~~~~~fD~v 159 (277)
T pfam01189 80 LNPQEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNKQRLKRVYANIQRLGVFNIIVQEGDARQIDQKLLGGEFDRI 159 (277)
T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCEE
T ss_conf 18899998988367888169999987589877998379789999999999975997479996644455743466666579
Q ss_pred E----EC--CCHHCCCCH----------------HHHHHHHHHHCCCCCEEEEEC
Q ss_conf 0----12--431026888----------------899888875213332157743
Q gi|254780872|r 136 L----NM--EVIEHVDNI----------------PYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 136 ~----~~--~vleHv~d~----------------~~~l~~~~~~LkpgG~liist 168 (254)
. |+ +++.+-++. ..+|+.+.++|||||.|+.||
T Consensus 160 LvDaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lvYsT 214 (277)
T pfam01189 160 LLDAPCSGTGVIRRDPDIKWLRREADIAQLAELQKELLKAAWDLVKPGGVLVYST 214 (277)
T ss_pred EECCCCCCCCEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9728988986345585312119999999999999999999999717699899994
No 148
>TIGR00755 ksgA dimethyladenosine transferase; InterPro: IPR011530 This family of proteins represent the rRNA adenine dimethylases (e.g. KsgA). The bacterial enzyme KsgA catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In yeast, and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB .; GO: 0016433 rRNA (adenine) methyltransferase activity, 0006364 rRNA processing.
Probab=98.30 E-value=1.1e-06 Score=62.07 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=64.4
Q ss_pred HHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCCC-EEEECCHHHHHHHHHHHHHC-CCCCCCCCCCCCCCC
Q ss_conf 9998865187644458800162888569856999999731981-69952135677888865310-112111122100123
Q gi|254780872|r 48 QDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGAT-VTGIDPSTKNIAIAKNHANM-KNINIDYRVSCAEEI 125 (254)
Q Consensus 48 ~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~~-V~giD~S~~~i~~Ak~~a~~-~~~~i~~~~~~~~~l 125 (254)
.+++.+.... .++..|||||||.|.+++.|++.+.+ |+||++.+.|++..+.+... ..-++....+|+-..
T Consensus 18 ~~~Iv~~~~~-------~~~~~vlEIGPG~G~LT~~Ll~~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~~~~i~~Dalk~ 90 (277)
T TIGR00755 18 IQKIVEAANV-------LENDVVLEIGPGLGALTEPLLKRAKKLVTAIEIDPRLAEILRKLLSEKLYENLEVIEGDALKV 90 (277)
T ss_pred HHHHHHHHCC-------CCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHCCCCCCCCEEEEECCEEEE
T ss_conf 9999997437-------899779997388207899999825984899972678999987521543324257871444541
Q ss_pred CCC-CCCHH-----HHEECCCHHCCCCH
Q ss_conf 211-15301-----30012431026888
Q gi|254780872|r 126 AET-DEKFD-----IILNMEVIEHVDNI 147 (254)
Q Consensus 126 ~~~-~~~FD-----~V~~~~vleHv~d~ 147 (254)
... ...|+ .|++ +.=+|+.-|
T Consensus 91 ~~~~~~~~~~~~~~~vv~-NLPY~Issp 117 (277)
T TIGR00755 91 DLNSLEDFPKEDKLKVVS-NLPYNISSP 117 (277)
T ss_pred CCCHHHHCCCCCCCEEEE-ECCCCHHHH
T ss_conf 232043316789857985-077432489
No 149
>pfam01564 Spermine_synth Spermine/spermidine synthase. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Probab=98.29 E-value=3.2e-06 Score=59.23 Aligned_cols=103 Identities=15% Similarity=0.147 Sum_probs=72.0
Q ss_pred HHCCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHC-----CCCCCCCCCCCCCCCC-CCCCCHHHHEE
Q ss_conf 01628885698569999997319--8169952135677888865310-----1121111221001232-11153013001
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANM-----KNINIDYRVSCAEEIA-ETDEKFDIILN 137 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~-----~~~~i~~~~~~~~~l~-~~~~~FD~V~~ 137 (254)
+.++||=||-|.|..+..+.+.. .+|+.||+.+.+++.||++... ...+++...+|..... ...++||+|++
T Consensus 75 ~pk~VLIiGGGDG~~~rEvlk~~~v~~v~~VEiD~~Vv~~~~~~lp~~~~~~~dprv~l~~~Dg~~~l~~~~~~yDvII~ 154 (240)
T pfam01564 75 NPKKVLIIGGGDGGALREVVKHPSVEKITLVEIDEKVIEFSKKFLPSLAGGFDDPRVKVVIGDGFKFLKDYLVKFDVIIV 154 (240)
T ss_pred CCCEEEEECCCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHCCCCCCEEEE
T ss_conf 85536764586579999985679953899975788999999998798524347985599981689999857254458999
Q ss_pred CCCHHC--CC--CHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 243102--68--88899888875213332157743
Q gi|254780872|r 138 MEVIEH--VD--NIPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 138 ~~vleH--v~--d~~~~l~~~~~~LkpgG~liist 168 (254)
--.=.- .. --..+++.+++.|+|||.++...
T Consensus 155 D~~DP~~~~~~Lfs~eFy~~~~~~L~~~Gi~v~Q~ 189 (240)
T pfam01564 155 DSTDPVGPAENLFSKEFYDLLKRALKEDGVFVTQA 189 (240)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 58997653344422999999998659997899924
No 150
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.29 E-value=4.6e-06 Score=58.24 Aligned_cols=111 Identities=18% Similarity=0.271 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHC-C--CCEEEECCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 56599999998865187644458800162888569856999999731-9--81699521356778888653101121111
Q gi|254780872|r 41 PVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQM-G--ATVTGIDPSTKNIAIAKNHANMKNINIDY 117 (254)
Q Consensus 41 ~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~-g--~~V~giD~S~~~i~~Ak~~a~~~~~~i~~ 117 (254)
+.|..|=...|.+.+.... +|.+|||+||..|-++..+++. | ..|+|||+.+-. .-.++.+
T Consensus 32 RsRaafKL~EId~K~~l~~------~~~~VlDLGaAPG~WsQva~~~~~~~g~VigVDl~~~~----------pi~gv~~ 95 (209)
T PRK11188 32 RSRAWFKLDEIQQSDKLFK------PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----------PIVGVDF 95 (209)
T ss_pred HHHHHHHHHHHHHHHCCCC------CCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCC----------CCCCCEE
T ss_conf 7899997999998856457------89989980689975789999973999739998653045----------3789676
Q ss_pred CCCCCCCCC--------CCCCCHHHHEECCCHHCC-----CC-------HHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 221001232--------111530130012431026-----88-------8899888875213332157743
Q gi|254780872|r 118 RVSCAEEIA--------ETDEKFDIILNMEVIEHV-----DN-------IPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 118 ~~~~~~~l~--------~~~~~FD~V~~~~vleHv-----~d-------~~~~l~~~~~~LkpgG~liist 168 (254)
.++|+.+-. .....||+|+|-.. .++ -| -..+|.-+.++|+|||.+++=+
T Consensus 96 i~gDi~~~~~~~~i~~~~~~~~~DvVlSDmA-Pn~tG~~~~D~~~s~~L~~~al~~a~~~Lk~gG~fv~K~ 165 (209)
T PRK11188 96 LQGDFRDELVLKALLERVGDSKVDVVMSDMA-PNMSGTPAVDIPRAMYLVELALDMCRQVLAPGGSFVVKV 165 (209)
T ss_pred ECCCCCCHHHHHHHHHHHCCCCCCEEECCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 4034458899999999858987308966666-566787033599999999999999998626798899999
No 151
>KOG3178 consensus
Probab=98.28 E-value=5.8e-06 Score=57.64 Aligned_cols=140 Identities=14% Similarity=0.132 Sum_probs=89.6
Q ss_pred CCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCHHHHEECCCHHCCCC
Q ss_conf 628885698569999997319816995213567788886531011211112210-0123211153013001243102688
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSC-AEEIAETDEKFDIILNMEVIEHVDN 146 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~-~~~l~~~~~~FD~V~~~~vleHv~d 146 (254)
...+|+|.|.|..+..+...-..|-||++...-+-.++.+.. .+ |+...++ ..+.|.. |+|++-.+|+|..|
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~g--V~~v~gdmfq~~P~~----daI~mkWiLhdwtD 251 (342)
T KOG3178 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PG--VEHVAGDMFQDTPKG----DAIWMKWILHDWTD 251 (342)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHC-CC--CCEECCCCCCCCCCC----CEEEEEEECCCCCH
T ss_conf 668875874769999999758877255147899985223206-78--651236453458876----75998700056876
Q ss_pred --HHHHHHHHHHHCCCCCEEEEEC--CCC-C----CHHHHHHHHHHHHHCCC-C-CCCCCCHHHCCCHHHHHHHHHHCCC
Q ss_conf --8899888875213332157743--676-6----02456415655431046-7-8998571225388999999998698
Q gi|254780872|r 147 --IPYFIKTCCSLLLSNGLMFIST--INR-N----LKAMLLAIIGAEYLLQW-L-PKGTHQYDKFIKPTEMECFLAANKV 215 (254)
Q Consensus 147 --~~~~l~~~~~~LkpgG~liist--~Nr-~----~~s~~~~i~~ae~il~~-~-P~gtH~~~~Fi~p~el~~~l~~~g~ 215 (254)
..++|++|++.|+|||.+++-- ..+ . ..|.. .....++.. . +.| +-.+.+|...++.++||
T Consensus 252 edcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v---~~~~d~lm~~~~~~G-----kert~~e~q~l~~~~gF 323 (342)
T KOG3178 252 EDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSV---TRDMDLLMLTQTSGG-----KERTLKEFQALLPEEGF 323 (342)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCE---EEHHHHHHHHHHCCC-----EECCHHHHHHCCHHHCC
T ss_conf 8899999999985899888999835688777766643210---104678999875256-----01149999711466468
Q ss_pred EEEEEEE
Q ss_conf 3888550
Q gi|254780872|r 216 KIIDRVG 222 (254)
Q Consensus 216 ~~~~~~g 222 (254)
.+..+.-
T Consensus 324 ~~~~~~~ 330 (342)
T KOG3178 324 PVCMVAL 330 (342)
T ss_pred CEEEEEE
T ss_conf 3468973
No 152
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.27 E-value=2.6e-06 Score=59.83 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=71.9
Q ss_pred CCHHHCCEEEECCCHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCC-CCCCHHHHE-
Q ss_conf 8800162888569856999999731---98169952135677888865310112-11112210012321-115301300-
Q gi|254780872|r 63 HPFKGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAE-TDEKFDIIL- 136 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~~s~~la~~---g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~-~~~~FD~V~- 136 (254)
.|-.|.+|||+.++.|-=+..++.+ ...+++.|++..-++..+.+....+. ++...+.+...+.. ..+.||.|+
T Consensus 110 ~p~pge~VLDlCAAPGGKtt~la~~m~~~G~lvAnd~~~~R~~~L~~n~~r~G~~n~~vt~~d~~~~~~~~~~~FD~ILv 189 (471)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGALVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPEMFDAILL 189 (471)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEE
T ss_conf 88999989995778548999999975899669998388999999999999719984799935866740323010667998
Q ss_pred ---EC--CCHHCCCC----------------HHHHHHHHHHHCCCCCEEEEEC
Q ss_conf ---12--43102688----------------8899888875213332157743
Q gi|254780872|r 137 ---NM--EVIEHVDN----------------IPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 137 ---~~--~vleHv~d----------------~~~~l~~~~~~LkpgG~liist 168 (254)
|+ +++..-++ ...+|..+.++|||||.|+.||
T Consensus 190 DaPCSG~G~~rk~p~~~~~w~~~~~~~~~~~Q~~iL~~A~~~LkpGG~LVYST 242 (471)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (471)
T ss_pred CCCCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 78888873355597576418987999999999999999998738896899981
No 153
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.26 E-value=2.6e-05 Score=53.64 Aligned_cols=174 Identities=17% Similarity=0.213 Sum_probs=95.6
Q ss_pred CHHHHHH-HHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHH----HHHHHHHCCCCEEEECCHHHHHHHHHHHHHC--CC
Q ss_conf 7565999-999988651876444588001628885698569----9999973198169952135677888865310--11
Q gi|254780872|r 40 NPVRIKY-IQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGL----LSEPMAQMGATVTGIDPSTKNIAIAKNHANM--KN 112 (254)
Q Consensus 40 N~~R~~~-I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~----~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~--~~ 112 (254)
.|.|.+. |.+.......... -.+..++|+|||++. +..+|.+ ....++||+|..+++.+-..... ..
T Consensus 41 Y~tr~E~~IL~~~~~~Ia~~~-----~~~~~lIElGsG~~~Kt~~LL~al~~-~~~Y~plDIS~~~L~~s~~~l~~~~p~ 114 (301)
T TIGR03438 41 YPTRTEAAILERHADEIAAAT-----GAGCELVELGSGSSRKTRLLLDALRQ-PARYVPIDISADALKESAAALAADYPQ 114 (301)
T ss_pred CCCHHHHHHHHHHHHHHHHHC-----CCCCEEEECCCCCCHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 871689999998899999862-----76764773178862378999998621-563887756899999999999977899
Q ss_pred CCCCCCCCCCCC---CCCCCCCHH-HHEECC-CHHCCC--CHHHHHHHHHHHCCCCCEEEEEC-----------------
Q ss_conf 211112210012---321115301-300124-310268--88899888875213332157743-----------------
Q gi|254780872|r 113 INIDYRVSCAEE---IAETDEKFD-IILNME-VIEHVD--NIPYFIKTCCSLLLSNGLMFIST----------------- 168 (254)
Q Consensus 113 ~~i~~~~~~~~~---l~~~~~~FD-~V~~~~-vleHv~--d~~~~l~~~~~~LkpgG~liist----------------- 168 (254)
+.|.-.+++.++ ++....... +++..+ .|=.++ +-..+|+.+.+.|.|||.++|.+
T Consensus 115 l~v~~v~~dy~~~l~~~~~~~~~~rl~~flGSsIGNf~~~ea~~fL~~~~~~l~~~d~lLiG~Dl~Kd~~~l~~AYnD~~ 194 (301)
T TIGR03438 115 LEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKDPAVLEAAYNDAA 194 (301)
T ss_pred CEEEEEEECHHCHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCC
T ss_conf 76899963331574456655788758997075447899899999999999971999848994044569899998732964
Q ss_pred -----CCCCCHHHHHHHHHHHH-------HCCC---------------------------CCCCC--CC--HHHCCCHHH
Q ss_conf -----67660245641565543-------1046---------------------------78998--57--122538899
Q gi|254780872|r 169 -----INRNLKAMLLAIIGAEY-------LLQW---------------------------LPKGT--HQ--YDKFIKPTE 205 (254)
Q Consensus 169 -----~Nr~~~s~~~~i~~ae~-------il~~---------------------------~P~gt--H~--~~~Fi~p~e 205 (254)
.|+|.+..+-...++++ .-.| +.+|- |. -.|| ++++
T Consensus 195 GvTa~FnlN~L~~iNr~Lg~dF~~~~f~h~a~yn~~~~riem~L~s~~~q~V~i~~~~~~f~~GE~I~tE~S~Ky-~~~~ 273 (301)
T TIGR03438 195 GVTAAFNLNLLRRLNRELGGDFDPDAFRHRAFYNEERSRIEMHLVSRRDQTVRLAGLTVRFAAGETIHTENSYKF-SLER 273 (301)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHCEEEEEECCCCCEEEEEEEECCCEEEEECCEEEEECCCCEEEEEEEECC-CHHH
T ss_conf 424789997999999984778576556799998687787999998168559998997888449898999974087-9999
Q ss_pred HHHHHHHCCCEEEEE
Q ss_conf 999999869838885
Q gi|254780872|r 206 MECFLAANKVKIIDR 220 (254)
Q Consensus 206 l~~~l~~~g~~~~~~ 220 (254)
+..+++++||++.+.
T Consensus 274 ~~~l~~~aG~~~~~~ 288 (301)
T TIGR03438 274 FAALAAAAGLRPEQV 288 (301)
T ss_pred HHHHHHHCCCCEEEE
T ss_conf 999999879944688
No 154
>PRK11727 putative SAM-dependent methyltransferase; Provisional
Probab=98.24 E-value=1.5e-06 Score=61.34 Aligned_cols=113 Identities=22% Similarity=0.364 Sum_probs=65.7
Q ss_pred HCC-CCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCC-CCCCHHHCCEEEECCCH-HHHHHH-HHHCCCCEEEECCHHHHH
Q ss_conf 468-88871267751756599999998865187644-45880016288856985-699999-973198169952135677
Q gi|254780872|r 26 WWE-PTGKFKPLHQINPVRIKYIQDKIMQHFQCKSD-DTHPFKGLRILDLGCGG-GLLSEP-MAQMGATVTGIDPSTKNI 101 (254)
Q Consensus 26 WwD-~~g~~~~Lh~~N~~R~~~I~~~i~~~~~~~~~-~~~~l~g~~VLDiGCG~-G~~s~~-la~~g~~V~giD~S~~~i 101 (254)
+|| |.|...| --|.|++||..-. ..+..... .....+..++||||||. .++... ....|++.+|.|+++..+
T Consensus 79 ~WdiP~~~LcP---pIPgR~nYIh~ia-DLL~~~~~~~~p~g~~v~gLDIGtGAncIYPLLG~~~ygW~fvgtDId~~sl 154 (326)
T PRK11727 79 HWDIPAGYLCP---PIPGRADYIHHLA-DLLAEDNSGVIPKGANVRVLDIGVGANCIYPIIGVQEYGWRFVGSDIDPQAL 154 (326)
T ss_pred CCCCCCCCCCC---CCCCHHHHHHHHH-HHHCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCEECCCEEEEECCCHHHH
T ss_conf 03388877289---9985377999999-9861136677888887236750567431121014300176379961798999
Q ss_pred HHHHHHHHCC-CC--CCCCC-CCCCCC----CCCCCCCHHHHEECCCHH
Q ss_conf 8888653101-12--11112-210012----321115301300124310
Q gi|254780872|r 102 AIAKNHANMK-NI--NIDYR-VSCAEE----IAETDEKFDIILNMEVIE 142 (254)
Q Consensus 102 ~~Ak~~a~~~-~~--~i~~~-~~~~~~----l~~~~~~FD~V~~~~vle 142 (254)
+.|+.....+ ++ .|+.+ +.+.+. +...++.||+.+|.=-++
T Consensus 155 ~~A~~~v~~N~~L~~~I~lr~q~~~~~If~gii~~~e~fdftmCNPPF~ 203 (326)
T PRK11727 155 ASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDLTLCNPPFH 203 (326)
T ss_pred HHHHHHHHHCCCCCCCEEEEECCCHHHHHCCCCCCCCEEEEEECCCCCC
T ss_conf 9999999848201052799962786765324588766577785189876
No 155
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.23 E-value=3.2e-06 Score=59.20 Aligned_cols=137 Identities=18% Similarity=0.206 Sum_probs=99.3
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCC-EEEECCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCHHHHEECCCHH
Q ss_conf 0162888569856999999731981-699521356778888653101121--1112210012321115301300124310
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGAT-VTGIDPSTKNIAIAKNHANMKNIN--IDYRVSCAEEIAETDEKFDIILNMEVIE 142 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~-V~giD~S~~~i~~Ak~~a~~~~~~--i~~~~~~~~~l~~~~~~FD~V~~~~vle 142 (254)
.|..|+|.=+|-|.||.++|+.|.. |+++|+.+.+++..+.+++.++++ +...++|+.++...-..||-|++-
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~---- 263 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMG---- 263 (341)
T ss_pred CCCEEEECCCCCCCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCEEEEC----
T ss_conf 9988998357865401246654786399994598999999999985576551567966488850204667889838----
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCC--EEEEE
Q ss_conf 2688889988887521333215774367660245641565543104678998571225388999999998698--38885
Q gi|254780872|r 143 HVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKV--KIIDR 220 (254)
Q Consensus 143 Hv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~--~~~~~ 220 (254)
+..+-..++....+++++||.+-+.+.-.. .. .+.. .-.++.....+.|. ++.+.
T Consensus 264 ~p~~a~~fl~~A~~~~k~~g~iHyy~~~~e------------~~---------~~~~--~~~~i~~~~~~~~~~~~v~~~ 320 (341)
T COG2520 264 LPKSAHEFLPLALELLKDGGIIHYYEFVPE------------DD---------IEER--PEKRIKSAARKGGYKVEVLKV 320 (341)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCCH------------HH---------CCCC--HHHHHHHHHHHCCCCCEEEEE
T ss_conf 987202338999998514867999962243------------41---------1112--599999987643676327889
Q ss_pred EEE-EECCCC
Q ss_conf 505-766777
Q gi|254780872|r 221 VGV-VYNVFC 229 (254)
Q Consensus 221 ~g~-~~~p~~ 229 (254)
+-+ .|.|--
T Consensus 321 r~VksysP~v 330 (341)
T COG2520 321 RRVKSYSPGV 330 (341)
T ss_pred EEECCCCCCE
T ss_conf 9932318971
No 156
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=98.23 E-value=4.1e-06 Score=58.59 Aligned_cols=94 Identities=18% Similarity=0.234 Sum_probs=58.2
Q ss_pred HHCCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC------C-CCCCCHHHHE
Q ss_conf 01628885698569999997319--8169952135677888865310112111122100123------2-1115301300
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEI------A-ETDEKFDIIL 136 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l------~-~~~~~FD~V~ 136 (254)
++.+|||+||+.|-++..+.+.+ ..|+|||+.+.. ...++.+.++++.+. . ...++||+|+
T Consensus 21 ~~~~vlDLg~aPGgwsq~~~~~~~~~~v~~vDl~~~~----------~~~~~~~i~gDi~~~~~~~~i~~~~~~~~DlV~ 90 (176)
T pfam01728 21 GGKTVLDLGAAPGGFSQVLLERGAKGRVVAVDLGPMK----------PIQGVTFLRGDITDPETLEKLLELLPGKVDLVL 90 (176)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCC----------CCCCCEEECCCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf 9999999689997699999985668739999734465----------677845651676687899999997399846897
Q ss_pred ECCCH-----HCCCC------HHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 12431-----02688------88998888752133321577436
Q gi|254780872|r 137 NMEVI-----EHVDN------IPYFIKTCCSLLLSNGLMFISTI 169 (254)
Q Consensus 137 ~~~vl-----eHv~d------~~~~l~~~~~~LkpgG~liist~ 169 (254)
|-... ++.+. ....+.-+.++|++||.+++-+.
T Consensus 91 sD~a~~~~g~~~~d~~~s~~L~~~~l~~a~~~L~~gG~fv~K~f 134 (176)
T pfam01728 91 CDGAPNVSGLENTDSFISLRLVLAALLLALEVLRPGGNFVVKLF 134 (176)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 33665656773347899999999999999998243763999998
No 157
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.20 E-value=3.2e-06 Score=59.27 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=53.3
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHE
Q ss_conf 01628885698569999997319816995213567788886531011211112210012321115301300
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIIL 136 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~ 136 (254)
++..|||||+|.|.++..|++.+.+|++|+..+.+++..+.+.. ...+++..++|+-++.......+.|+
T Consensus 13 ~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~-~~~n~~ii~~D~L~~~~~~~~~~~iv 82 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFA-AADNLTVIHGDALKFDLPKLQPYKVV 82 (169)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHC-CCCCEEEEECCHHCCCCCCCCCCEEE
T ss_conf 94979996897029999999731635316378899999998641-07977999571112553115873699
No 158
>pfam11968 DUF3321 Protein of unknown function (DUF3321). This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.18 E-value=1.6e-05 Score=54.92 Aligned_cols=116 Identities=21% Similarity=0.289 Sum_probs=78.9
Q ss_pred CCEEEECCCHHHHHHHHHHCC-CCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--C-CCCCCHHHHEECCCHHC
Q ss_conf 628885698569999997319-8169952135677888865310112111122100123--2-11153013001243102
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQMG-ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEI--A-ETDEKFDIILNMEVIEH 143 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~g-~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l--~-~~~~~FD~V~~~~vleH 143 (254)
.++|||||=.--.+ .+..+ .+|+.||+.++- ..| .+.|.-+. | .+.++||+|.|+-||-.
T Consensus 54 lr~LEVGALst~N~--~S~~~~~dv~rIDLnSq~------------p~I--~qqDFmerPlP~~e~e~F~iISlSLVLNf 117 (220)
T pfam11968 54 LRALEVGALSTKNA--CSKSGLFDVTRIDLNSQE------------PGI--LQQDFMERPLPKDESEKFDIISLSLVLNF 117 (220)
T ss_pred CEEEEECCCCCCCH--HCCCCEEEEEEEECCCCC------------CCC--HHHHHHHCCCCCCCCCCCCEEEEEEEEEC
T ss_conf 31775545564212--225674777885258999------------871--44324407788883114135888777741
Q ss_pred CCCHH---HHHHHHHHHCCCCCE-----EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCC
Q ss_conf 68888---998888752133321-----5774367660245641565543104678998571225388999999998698
Q gi|254780872|r 144 VDNIP---YFIKTCCSLLLSNGL-----MFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKV 215 (254)
Q Consensus 144 v~d~~---~~l~~~~~~LkpgG~-----liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~ 215 (254)
||+|. ..|+.+.+.|+|+|. +|+-- |.-.=.-.+|++.+.|.++++.-||
T Consensus 118 VP~~~~RGeML~r~~~fL~~~~~~~~~~lFlVL----------------------PlpCv~NSRY~~~~~l~~im~slGf 175 (220)
T pfam11968 118 VPDPADRGEMLKRTTKFLRPPGPGSPPSLFLVL----------------------PLPCVTNSRYMDEERLQAIMSSLGF 175 (220)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE----------------------EHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf 698788869999999971799766663268873----------------------2456404400199999999996795
Q ss_pred EEEEEE
Q ss_conf 388855
Q gi|254780872|r 216 KIIDRV 221 (254)
Q Consensus 216 ~~~~~~ 221 (254)
..+..+
T Consensus 176 ~~~~~k 181 (220)
T pfam11968 176 VLVKSK 181 (220)
T ss_pred EEEEEE
T ss_conf 588764
No 159
>PRK00536 speE spermidine synthase; Provisional
Probab=98.16 E-value=1.1e-05 Score=55.81 Aligned_cols=114 Identities=12% Similarity=0.087 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCC-----CCCCCC
Q ss_conf 599999998865187644458800162888569856999999731981699521356778888653101-----121111
Q gi|254780872|r 43 RIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMK-----NINIDY 117 (254)
Q Consensus 43 R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~-----~~~i~~ 117 (254)
|.+|+......|...-.. . +.++||=||-|.|-.+..+.|...+|+-|++.+..|+.+|++.... +.+++.
T Consensus 53 ~~ef~YhEMl~Hvpl~~H-p---~Pk~VLIIGGGDGG~~REvlKH~~~v~~VEID~~Vv~~sk~ylP~~~~~~~dpr~~~ 128 (262)
T PRK00536 53 NFLHIESELLAHMGGCTK-K---ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTH 128 (262)
T ss_pred CHHHHHHHHHHCHHHHCC-C---CCCEEEEECCCCHHHHHHHHCCCCEEEEEEECHHHHHHHHHHCHHHHHHHCCCCEEH
T ss_conf 006788888753023218-9---978799986875599999872897669999678999999997856565413996113
Q ss_pred CCCCCCCCCCCCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 221001232111530130012431026888899888875213332157743
Q gi|254780872|r 118 RVSCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 118 ~~~~~~~l~~~~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist 168 (254)
. .+......++||+|+.-. .++..+.+.+++.|+|||.++..+
T Consensus 129 ~---~~~~~~~~~~fDvIIvDs-----l~~~~~~~~l~~~L~~~Gi~v~Q~ 171 (262)
T PRK00536 129 A---KQLLDLDIKKYDLIICLQ-----EPDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred H---HHHHHHCCCCCCEEEECC-----CCCCCHHHHHHHHHCCCCEEEECC
T ss_conf 9---998761547668899889-----998054999999858998999838
No 160
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=3.6e-06 Score=58.93 Aligned_cols=70 Identities=21% Similarity=0.223 Sum_probs=54.5
Q ss_pred HCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CHHHHEE
Q ss_conf 1628885698569999997319816995213567788886531011211112210012321115-3013001
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDE-KFDIILN 137 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~-~FD~V~~ 137 (254)
+..|||||+|.|.+++.|++.+..|++|++.+.+++..+.+.. ...+++..++|+-...+..- .++.|++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~d~~~l~~~~~vVa 101 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKFDFPSLAQPYKVVA 101 (259)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCEEEEEEECHHHHHHHHHHHC-CCCCEEEEECCHHCCCCHHHCCCCEEEE
T ss_conf 9869997898778899999606957999968899999997506-5665599947242475135157888998
No 161
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=6.9e-06 Score=57.17 Aligned_cols=107 Identities=28% Similarity=0.345 Sum_probs=74.0
Q ss_pred CCCHHHCCEEEECCCHHHHHHHHHHC----CCCEEEECCHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCC---CCCCHH
Q ss_conf 58800162888569856999999731----981699521356778888653101121-1112210012321---115301
Q gi|254780872|r 62 THPFKGLRILDLGCGGGLLSEPMAQM----GATVTGIDPSTKNIAIAKNHANMKNIN-IDYRVSCAEEIAE---TDEKFD 133 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG~G~~s~~la~~----g~~V~giD~S~~~i~~Ak~~a~~~~~~-i~~~~~~~~~l~~---~~~~FD 133 (254)
..|-.|.+|||...+.|-=+.+++.+ |..|+++|.|+.-++..+.+.+..++. +...+.+...++. ..++||
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf 19999796888079997699999996689987699744987899999999997199834899513301431134557778
Q ss_pred HHEE------CCCHHCCCC----------------HHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 3001------243102688----------------8899888875213332157743
Q gi|254780872|r 134 IILN------MEVIEHVDN----------------IPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 134 ~V~~------~~vleHv~d----------------~~~~l~~~~~~LkpgG~liist 168 (254)
.|.+ .+++..=|| ...+|....++|||||.|+.||
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred EEEECCCCCCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 599879998771133581232038999999999999999999998448798899990
No 162
>KOG2352 consensus
Probab=98.15 E-value=5.1e-06 Score=57.96 Aligned_cols=102 Identities=23% Similarity=0.392 Sum_probs=81.1
Q ss_pred CCEEEECCCHHHHHHHHHHCCC-CEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCC
Q ss_conf 6288856985699999973198-169952135677888865310112111122100123211153013001243102688
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVDN 146 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~g~-~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d 146 (254)
.++|-+|||.-.+++.+-+-|. +|+-+|.|+-.++....+-......+.+...++..+.+++++||+|+--+.+.|+-.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred CEEEEECCCCCHHHHHHHHCCCCCCEECCCCHHHHHHHHHCCCCCCCCEEEEEECCHHCCCCCCCEEEEEECCCCCCCCC
T ss_conf 11476158877999999865877742200568999998751456774248898021103578753148873276400147
Q ss_pred ----H------HHHHHHHHHHCCCCCEEEEECC
Q ss_conf ----8------8998888752133321577436
Q gi|254780872|r 147 ----I------PYFIKTCCSLLLSNGLMFISTI 169 (254)
Q Consensus 147 ----~------~~~l~~~~~~LkpgG~liist~ 169 (254)
+ ...+.++.|+|+|||+.+.-|.
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 850023467766777667887426987899986
No 163
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.15 E-value=4.7e-06 Score=58.18 Aligned_cols=102 Identities=18% Similarity=0.238 Sum_probs=74.8
Q ss_pred CCHHHCCEEEECCCHHHHHHHHHHCC---CCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-----CCCCCHHH
Q ss_conf 88001628885698569999997319---81699521356778888653101121111221001232-----11153013
Q gi|254780872|r 63 HPFKGLRILDLGCGGGLLSEPMAQMG---ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA-----ETDEKFDI 134 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~~s~~la~~g---~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~-----~~~~~FD~ 134 (254)
.|-+|+-|||+|-|||.++.++-++| .++++|+.|++.....++ ...+. ++..+++.++. ..+..||.
T Consensus 45 ~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~--~~p~~--~ii~gda~~l~~~l~e~~gq~~D~ 120 (194)
T COG3963 45 DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQ--LYPGV--NIINGDAFDLRTTLGEHKGQFFDS 120 (194)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEEEECHHHHHHHHH--HCCCC--CCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 84459764777698667689999657995436899827799999997--58875--130540565787786527974016
Q ss_pred HEECCCHHCCCC--HHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 001243102688--8899888875213332157743
Q gi|254780872|r 135 ILNMEVIEHVDN--IPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 135 V~~~~vleHv~d--~~~~l~~~~~~LkpgG~liist 168 (254)
|+|.--+-.++- ..+.|+.+...|.+||.++-=|
T Consensus 121 viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 121 VISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 886560024867789999999998568997279998
No 164
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=98.14 E-value=6.1e-06 Score=57.50 Aligned_cols=113 Identities=18% Similarity=0.279 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCC---CEEEECCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 5659999999886518764445880016288856985699999973198---1699521356778888653101121111
Q gi|254780872|r 41 PVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGA---TVTGIDPSTKNIAIAKNHANMKNINIDY 117 (254)
Q Consensus 41 ~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~---~V~giD~S~~~i~~Ak~~a~~~~~~i~~ 117 (254)
..|..|=...+...+..- -+|+.|||+||-.|-.|......++ .|+|||+.+= ....-.|+.|
T Consensus 13 RSRA~fKL~qln~~~kLi------k~G~~VlDLGAAPGGWsQva~~~~G~kG~ViA~Dl~~~--------k~FP~~nv~f 78 (192)
T TIGR00438 13 RSRASFKLLQLNQKFKLI------KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM--------KGFPIENVDF 78 (192)
T ss_pred CHHHHHHHHHHCCCCCCE------ECCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCC--------CCCCCCCEEE
T ss_conf 016678999850215611------07886786578987387788776068533899854557--------8856466147
Q ss_pred CCCCCCC----------CCCCCCCHHHHEE------C--CCHHCCC--C-HHHHHHHHHHHCCCCCEEEEE
Q ss_conf 2210012----------3211153013001------2--4310268--8-889988887521333215774
Q gi|254780872|r 118 RVSCAEE----------IAETDEKFDIILN------M--EVIEHVD--N-IPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 118 ~~~~~~~----------l~~~~~~FD~V~~------~--~vleHv~--d-~~~~l~~~~~~LkpgG~liis 167 (254)
++||+.+ ++....+.|+|+| + --+-|.- | .+.+|+=|.++|+|+|-+++=
T Consensus 79 i~GDftdee~l~ki~~~~g~dekk~DVV~SDaaP~~SG~~~iDh~Rs~dLv~~aL~ia~~vL~~~GnfvvK 149 (192)
T TIGR00438 79 IRGDFTDEEVLNKILERVGDDEKKVDVVMSDAAPNISGIWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 149 (192)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 54476787899999985789874377898526888789875434437999999999999986158989999
No 165
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.14 E-value=3e-06 Score=59.41 Aligned_cols=122 Identities=20% Similarity=0.283 Sum_probs=76.9
Q ss_pred EEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCC--CH
Q ss_conf 8885698569999997319816995213567788886531011211112210012321115301300124310268--88
Q gi|254780872|r 70 ILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVD--NI 147 (254)
Q Consensus 70 VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~--d~ 147 (254)
.+-||||.-.+. -|+..+ |.. .+..+++.+......++.+++-|+|+|.+|+||+. .-
T Consensus 6 kv~ig~G~~r~n-----pgWi~~--d~e-------------d~~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg 65 (185)
T COG4627 6 KVKIGAGGKRVN-----PGWIIT--DVE-------------DRPEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEG 65 (185)
T ss_pred EEEEECCCCCCC-----CCCEEE--EHH-------------CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 899831663258-----873661--310-------------165321312145544588760678999999988769988
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH--HH-HHHHHCCCCCCCCCCHHHCC-CHHHHHHHHHHCCCEE
Q ss_conf 89988887521333215774367660245641--56-55431046789985712253-8899999999869838
Q gi|254780872|r 148 PYFIKTCCSLLLSNGLMFISTINRNLKAMLLA--II-GAEYLLQWLPKGTHQYDKFI-KPTEMECFLAANKVKI 217 (254)
Q Consensus 148 ~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~--i~-~ae~il~~~P~gtH~~~~Fi-~p~el~~~l~~~g~~~ 217 (254)
..++++|+++|||||+|-++.|.-....+.+. .. +++. |. .|.-.+++ +-+++.....++||.+
T Consensus 66 ~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpg-----pn-dhP~~r~v~t~r~m~n~~m~~~~~~ 133 (185)
T COG4627 66 TSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPG-----PN-DHPLHRIVKTMRMMFNGFMDAGFVV 133 (185)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCC-----CC-CCCHHHHHHHHHHHHHHHHHHHHEE
T ss_conf 99999999970867589997487520477774455306989-----88-8807899999999987887630122
No 166
>pfam05971 Methyltransf_10 Protein of unknown function (DUF890). This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of this family is unknown.
Probab=98.13 E-value=5.6e-06 Score=57.75 Aligned_cols=111 Identities=21% Similarity=0.303 Sum_probs=66.0
Q ss_pred HCC-CCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHH-HHHHHHH-HCCCCEEEECCHHHHHH
Q ss_conf 468-88871267751756599999998865187644458800162888569856-9999997-31981699521356778
Q gi|254780872|r 26 WWE-PTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGG-LLSEPMA-QMGATVTGIDPSTKNIA 102 (254)
Q Consensus 26 WwD-~~g~~~~Lh~~N~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G-~~s~~la-~~g~~V~giD~S~~~i~ 102 (254)
.|| |.|...| .-|.|.+||..--. .+.... ...-.+.++||||||.- ++...-+ ..|++.+|.|+++..++
T Consensus 30 ~wdiP~~~LcP---~iP~R~nYIh~l~D-LL~~~~--~~~~~~v~gLDIGtGAscIYPLLg~~~y~W~fvgtDId~~sl~ 103 (254)
T pfam05971 30 IWDIPDGFLCP---PVPGRADYIHWVAD-LLGHQD--SDIPTLRRALDIGTGANCIYPLLGVTEYGWRFVGSEVDPQSLN 103 (254)
T ss_pred EEECCCCCCCC---CCCCHHHHHHHHHH-HHHHCC--CCCCCCCEEEEECCCHHHHHHHHCCCCCCCEEEEEECCHHHHH
T ss_conf 40079888389---99868899999999-975427--8877774677733664157775404004863797627989999
Q ss_pred HHHHHHHCC-CC--CCCCCC-CCCCC----CCCCCCCHHHHEECCCHH
Q ss_conf 888653101-12--111122-10012----321115301300124310
Q gi|254780872|r 103 IAKNHANMK-NI--NIDYRV-SCAEE----IAETDEKFDIILNMEVIE 142 (254)
Q Consensus 103 ~Ak~~a~~~-~~--~i~~~~-~~~~~----l~~~~~~FD~V~~~~vle 142 (254)
.|+.....+ ++ .|+.+. .+... +...++.||+++|.=-++
T Consensus 104 ~A~~nv~~N~~L~~~I~l~~q~~~~~if~gii~~~e~fdftmCNPPF~ 151 (254)
T pfam05971 104 SAKAIVEANPNLSDAIELRRQPQSTLIFNGLIGENERYDFTLCNPPFH 151 (254)
T ss_pred HHHHHHHHCCCCHHCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCC
T ss_conf 999999858332311699963781102234468766066630379866
No 167
>KOG2798 consensus
Probab=98.12 E-value=9e-05 Score=50.26 Aligned_cols=160 Identities=18% Similarity=0.218 Sum_probs=98.3
Q ss_pred HHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH---HHHCCC-CC--------
Q ss_conf 999988651876444588001628885698569999997319816995213567788886---531011-21--------
Q gi|254780872|r 47 IQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKN---HANMKN-IN-------- 114 (254)
Q Consensus 47 I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~---~a~~~~-~~-------- 114 (254)
|.+.+..++..... +....+||-=|||.|.++..++..|.++-|=+.|--|+-...- ..+..+ ..
T Consensus 134 ii~~l~~lfp~~~~---~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~ 210 (369)
T KOG2798 134 IIEELNSLFPSRGK---ERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQY 210 (369)
T ss_pred HHHHHHHHCCCCCC---CCCCCEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 79998741898666---555862881488711678998874333343078999999999998754267847997421201
Q ss_pred ------------C---------------CC--CCCCCCCCCCC---CCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf ------------1---------------11--22100123211---1530130012431026888899888875213332
Q gi|254780872|r 115 ------------I---------------DY--RVSCAEEIAET---DEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNG 162 (254)
Q Consensus 115 ------------i---------------~~--~~~~~~~l~~~---~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG 162 (254)
| .| ..||.-+.-.. .+.||+|+..-.+--..+.-..|..++.+|||||
T Consensus 211 sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GG 290 (369)
T KOG2798 211 SNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGG 290 (369)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCC
T ss_conf 45553013436656765564434789987422156505772676777755548999875243779999999998515783
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCC--CHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 157743676602456415655431046789985712253--88999999998698388855057
Q gi|254780872|r 163 LMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFI--KPTEMECFLAANKVKIIDRVGVV 224 (254)
Q Consensus 163 ~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi--~p~el~~~l~~~g~~~~~~~g~~ 224 (254)
.-+ |--++-| .+-|.++|.-+.+| +-++|..+.+..||+++.-+|+.
T Consensus 291 vWi----NlGPLlY-----------HF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~~Id 339 (369)
T KOG2798 291 VWI----NLGPLLY-----------HFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKERGID 339 (369)
T ss_pred EEE----ECCCEEE-----------ECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 899----3256255-----------136788876553102469999999984582787740010
No 168
>KOG2187 consensus
Probab=98.12 E-value=2.9e-06 Score=59.53 Aligned_cols=97 Identities=22% Similarity=0.287 Sum_probs=70.0
Q ss_pred HCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCC--CCCHHHHEECCCHHC
Q ss_conf 16288856985699999973198169952135677888865310112-111122100123211--153013001243102
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAET--DEKFDIILNMEVIEH 143 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~~--~~~FD~V~~~~vleH 143 (254)
++-+||+-||||.++..+|+....|.||++++++++-|+.+|..+++ |.+|.++-+|++.-. ...+|.=....
T Consensus 384 ~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~---- 459 (534)
T KOG2187 384 DKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVA---- 459 (534)
T ss_pred CCEEEEEEECCCCEEHHHHCCCCCEEEEECCHHHCCHHHHCCHHCCCCCCEEEECCHHHCCCHHCCCCCCCCCEEE----
T ss_conf 8479986306884000010266612102338454443554001158654024306420015012056788875689----
Q ss_pred CCCH------HHHHHHHHHHCCCCCEEEEE
Q ss_conf 6888------89988887521333215774
Q gi|254780872|r 144 VDNI------PYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 144 v~d~------~~~l~~~~~~LkpgG~liis 167 (254)
+-|| .++++.+.+.-+|-=.+++|
T Consensus 460 iiDPpR~Glh~~~ik~l~~~~~~~rlvyvS 489 (534)
T KOG2187 460 IIDPPRKGLHMKVIKALRAYKNPRRLVYVS 489 (534)
T ss_pred EECCCCCCCCHHHHHHHHHCCCCCCEEEEE
T ss_conf 978886761099999998534755058997
No 169
>PRK04266 fibrillarin; Provisional
Probab=98.04 E-value=0.00022 Score=47.88 Aligned_cols=157 Identities=16% Similarity=0.178 Sum_probs=88.6
Q ss_pred CCCCCCCHHHCCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---CCCCCH
Q ss_conf 644458800162888569856999999731--981699521356778888653101121111221001232---111530
Q gi|254780872|r 58 KSDDTHPFKGLRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA---ETDEKF 132 (254)
Q Consensus 58 ~~~~~~~l~g~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~---~~~~~F 132 (254)
......+-.|.+||=+|.++|.-..+++.. ...|.|||+|+.+..-.-. ..+...||--..+|+.... ..-+.-
T Consensus 64 g~~~~~i~~gskVLYLGAasGTTVSHvsDiV~~G~VyAVE~spr~~RdL~~-la~~R~NivPIl~DAr~P~~Y~~~v~~V 142 (226)
T PRK04266 64 GLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGRVYAVEFAPRVMRELLL-VAEERKNIIPILGDARKPEEYAHLVEKV 142 (226)
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEEECCHHHHHHHH-HHHHCCCCEEEECCCCCHHHHHHHCCCC
T ss_conf 975567589987999547779848889875179649999827077899999-9850899625754678845644205656
Q ss_pred HHHEECCCHHCCCCH-HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHH
Q ss_conf 130012431026888-8998888752133321577436766024564156554310467899857122538899999999
Q gi|254780872|r 133 DIILNMEVIEHVDNI-PYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLA 211 (254)
Q Consensus 133 D~V~~~~vleHv~d~-~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~ 211 (254)
|+|++ +|-+ +|. ..++.++...|||||.++++.--++..+ .. ++. +-| ++-.+.|+
T Consensus 143 D~i~q-DvAQ--~dQa~I~~~Na~~FLk~gG~~~l~iKA~Sid~-----------t~--~p~----~vf---~~~~~~L~ 199 (226)
T PRK04266 143 DVIYQ-DVAQ--PNQAEIAADNADIFLKPGGYLMLAIKARSIDV-----------TK--DPK----EIF---KEEIKKLE 199 (226)
T ss_pred CEEEE-ECCC--HHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEC-----------CC--CHH----HHH---HHHHHHHH
T ss_conf 58996-0677--42899999999986015988999997423564-----------68--989----999---99999998
Q ss_pred HCCCEEEEEEEEEECCCCCEEEECCCCCCEEEEEEEECC
Q ss_conf 869838885505766777757864788645179999758
Q gi|254780872|r 212 ANKVKIIDRVGVVYNVFCNKWQLSAKNMDVNYMVLGHLP 250 (254)
Q Consensus 212 ~~g~~~~~~~g~~~~p~~~~w~~~~~~~~vnY~~~~~kp 250 (254)
+.||++++... ..|+-. + +++++++|+
T Consensus 200 ~~~~~~~e~i~--L~py~~-------d---H~~vv~r~~ 226 (226)
T PRK04266 200 EGGFEILEVVD--LEPYHK-------D---HAAVVARKK 226 (226)
T ss_pred HCCCCEEEEEE--CCCCCC-------C---CEEEEEECC
T ss_conf 76996689981--577678-------8---289999669
No 170
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.04 E-value=0.00015 Score=48.96 Aligned_cols=176 Identities=17% Similarity=0.207 Sum_probs=92.3
Q ss_pred HCHHHHHH-HHHHHHHHCCCCCCCCCCHHHCCEEEECCCHH----HHHHHHHHCC--CCEEEECCHHHHHHHHHHHH---
Q ss_conf 17565999-99998865187644458800162888569856----9999997319--81699521356778888653---
Q gi|254780872|r 39 INPVRIKY-IQDKIMQHFQCKSDDTHPFKGLRILDLGCGGG----LLSEPMAQMG--ATVTGIDPSTKNIAIAKNHA--- 108 (254)
Q Consensus 39 ~N~~R~~~-I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G----~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a--- 108 (254)
..|+|.+. |.+.......... -.+..|+|+|||.+ .+..+|.+.+ ...++||+|.++++.+-...
T Consensus 53 YYptR~E~~IL~~~~~eIa~~i-----~~~~~lVElGsG~~~Kt~~LL~al~~~~~~~~Y~piDIS~~~L~~s~~~l~~~ 127 (319)
T TIGR03439 53 YYLTNDEIEILKKHSSDIAASI-----PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG 127 (319)
T ss_pred CCCHHHHHHHHHHHHHHHHHHC-----CCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf 6853789999999899999855-----89976997468872458999999985499742886517699999999874240
Q ss_pred HCCCCCCCCCCCCCCCC----CCC--CCCHHHHEECC-CHHCCC--CHHHHHHHHH-HHCCCCCEEEEEC----------
Q ss_conf 10112111122100123----211--15301300124-310268--8889988887-5213332157743----------
Q gi|254780872|r 109 NMKNINIDYRVSCAEEI----AET--DEKFDIILNME-VIEHVD--NIPYFIKTCC-SLLLSNGLMFIST---------- 168 (254)
Q Consensus 109 ~~~~~~i~~~~~~~~~l----~~~--~~~FD~V~~~~-vleHv~--d~~~~l~~~~-~~LkpgG~liist---------- 168 (254)
....+.+.-++++.++. ... ...=-+++..+ .|=.+. +-..+|+.+. .+|.|||.+++..
T Consensus 128 ~~~~l~v~~i~gdy~~~~~~l~~~~~~~~~~l~~flGStIGNf~~~eA~~fL~~~~~~~l~~~d~lLiG~Dl~Kd~~~l~ 207 (319)
T TIGR03439 128 NFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVL 207 (319)
T ss_pred CCCCCEEEEEEECHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHH
T ss_conf 48975588887537876542057544678759996165446789799999999999972598875896566777989989
Q ss_pred ------------CCCCCHHHHHHHHHHH--------HHCCCCC-------------------------CCC--CC-H-HH
Q ss_conf ------------6766024564156554--------3104678-------------------------998--57-1-22
Q gi|254780872|r 169 ------------INRNLKAMLLAIIGAE--------YLLQWLP-------------------------KGT--HQ-Y-DK 199 (254)
Q Consensus 169 ------------~Nr~~~s~~~~i~~ae--------~il~~~P-------------------------~gt--H~-~-~~ 199 (254)
.|+|.+..+....+++ +.-.|=| +|- |. . .|
T Consensus 208 ~AYnD~~GvTa~FnlN~L~riNr~Lg~d~F~~~~f~h~a~yn~~~~riem~L~s~~~v~i~~~~~~f~~GE~I~tE~S~K 287 (319)
T TIGR03439 208 RAYNDPGGVTRRFVLNGLVHANEILGSEAFREEDWEFLGEWDEELGRHEAFYIPKKDVSIGLEGVVIRKGEKIRFECSGK 287 (319)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCEEEEEECCCCCCCHHEEECCCEEEECCCCEEECCCCEEEEEEEEC
T ss_conf 76308854109999859999999847345765306799998477581311277065489705727977999899997518
Q ss_pred CCCHHHHHHHHHHCCCEEEEE
Q ss_conf 538899999999869838885
Q gi|254780872|r 200 FIKPTEMECFLAANKVKIIDR 220 (254)
Q Consensus 200 Fi~p~el~~~l~~~g~~~~~~ 220 (254)
| +++++..+++++||++...
T Consensus 288 y-t~~~~~~l~~~aG~~~~~~ 307 (319)
T TIGR03439 288 Y-DKDEREKLCQSAGLKVVDV 307 (319)
T ss_pred C-CHHHHHHHHHHCCCEEEEE
T ss_conf 8-9999999999879904688
No 171
>pfam04672 DUF574 Protein of unknown function (DUF574). Family of uncharacterized proteins.
Probab=98.03 E-value=6.8e-05 Score=51.00 Aligned_cols=170 Identities=16% Similarity=0.221 Sum_probs=99.1
Q ss_pred CEEEECCCH--HHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCC------CCCCCHH---
Q ss_conf 288856985--6999999731---9816995213567788886531011-21111221001232------1115301---
Q gi|254780872|r 69 RILDLGCGG--GLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKN-INIDYRVSCAEEIA------ETDEKFD--- 133 (254)
Q Consensus 69 ~VLDiGCG~--G~~s~~la~~---g~~V~giD~S~~~i~~Ak~~a~~~~-~~i~~~~~~~~~l~------~~~~~FD--- 133 (254)
..||+|||- ---....|+. .+.|+-+|..+-.+..|+.-...+. ....|.++|+.+.. ...+.+|
T Consensus 72 QFLDlGsGlPT~~nvHeVAq~~~P~aRVVYVD~DPvvlaHaraLL~~~~~~~t~~v~aDlrdp~~iL~~p~~~~~lD~~r 151 (268)
T pfam04672 72 QFLDIGTGLPTEPNVHQVAQRVAPESRVVYVDNDPIVLTHARALLTSTPEGATDYIHADVRDPEEILEHPEARRTLDFDR 151 (268)
T ss_pred EEEEECCCCCCCCCCCHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHCCHHHHHHCCCCC
T ss_conf 57760569999997214667329986399988982799999999568987746999777779899865987885378788
Q ss_pred --HHEECCCHHCCCC---HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHH
Q ss_conf --3001243102688---88998888752133321577436766024564156554310467899857122538899999
Q gi|254780872|r 134 --IILNMEVIEHVDN---IPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMEC 208 (254)
Q Consensus 134 --~V~~~~vleHv~d---~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~ 208 (254)
.++...||||++| |..++..+...|-||.+|+||-.--....-.... .+.++. .+.. +-.+-+++|+..
T Consensus 152 PValll~~vLh~v~D~~~p~~iv~~l~d~l~pGS~L~ish~t~d~~p~~~~~--~~~~~~---~~~~-p~~~Rs~~ei~~ 225 (268)
T pfam04672 152 PVALSLVAILHFVPDDDDPYGIVRRLMDALPAGSYLVLSHGTSDLNPELVEA--VADVYA---KGGN-PLRLRSRAEVAR 225 (268)
T ss_pred CCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH--HHHHHH---CCCC-CCCCCCHHHHHH
T ss_conf 6134533443457861049999999997269976599984358888889999--999997---0799-864059999999
Q ss_pred HHHHCCCEEEEEEEEEECCCCCEEEECC------CCCC-EEEEEEEECC
Q ss_conf 9998698388855057667777578647------8864-5179999758
Q gi|254780872|r 209 FLAANKVKIIDRVGVVYNVFCNKWQLSA------KNMD-VNYMVLGHLP 250 (254)
Q Consensus 209 ~l~~~g~~~~~~~g~~~~p~~~~w~~~~------~~~~-vnY~~~~~kp 250 (254)
++. ||++++= |+.+ ...|+=.. .... .-|..+++||
T Consensus 226 ~f~--g~elveP-Glv~---~~~WrPd~~~~~~~~~~~~~~y~gVaRKP 268 (268)
T pfam04672 226 FFD--GLELVEP-GLVP---VTRWRPDGEAGREPTPEAIGIYAGVARKP 268 (268)
T ss_pred HCC--CCCCCCC-CEEC---CCCCCCCCCCCCCCCHHHHEEEEEEEECC
T ss_conf 759--9840899-3433---35646999988888810406888998586
No 172
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.02 E-value=2.1e-05 Score=54.18 Aligned_cols=102 Identities=23% Similarity=0.318 Sum_probs=75.7
Q ss_pred HCCEEEECCCHHHHHHHHHHCCCC-----------------------------------------EEEECCHHHHHHHHH
Q ss_conf 162888569856999999731981-----------------------------------------699521356778888
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQMGAT-----------------------------------------VTGIDPSTKNIAIAK 105 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~~g~~-----------------------------------------V~giD~S~~~i~~Ak 105 (254)
+..++|==||+|.++...|-++.+ ..|+|+++.||+.|+
T Consensus 192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak 271 (381)
T COG0116 192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK 271 (381)
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHH
T ss_conf 98341688773479999997344568763322004554321388899999999998651476665898748989999999
Q ss_pred HHHHCCCCC--CCCCCCCCCCCCCCCCCHHHHEECCCH-HCCCCH-------HHHHHHHHHHCCCCCEEEEEC
Q ss_conf 653101121--111221001232111530130012431-026888-------899888875213332157743
Q gi|254780872|r 106 NHANMKNIN--IDYRVSCAEEIAETDEKFDIILNMEVI-EHVDNI-------PYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 106 ~~a~~~~~~--i~~~~~~~~~l~~~~~~FD~V~~~~vl-eHv~d~-------~~~l~~~~~~LkpgG~liist 168 (254)
.+|+..++. |.|.++++.++...-+.+|+|+|.--- +-+.+. ..+.+.+++.++.-+..+++|
T Consensus 272 ~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 272 ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHCCCCCEEEEEECCHHHCCCCCCCCCEEEECCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9899769883289997443216687666998995898301117704699999999999998725773699976
No 173
>PTZ00338 dimethyladenosine transferase; Provisional
Probab=98.01 E-value=2.3e-05 Score=53.91 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=53.4
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCHHHHEE
Q ss_conf 01628885698569999997319816995213567788886531011--2111122100123211153013001
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKN--INIDYRVSCAEEIAETDEKFDIILN 137 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~--~~i~~~~~~~~~l~~~~~~FD~V~~ 137 (254)
.+..|||||.|.|.++..|++.+.+|++|++.+.++...+.+....+ .+++..++|+-+... ..||.|++
T Consensus 38 ~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~n~~ii~~D~Lk~d~--~~~~~vVa 109 (296)
T PTZ00338 38 PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLQVIEGDALKTEF--PYFDVCVA 109 (296)
T ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCCCCCCEEECCHHHHCCC--CCCCEEEE
T ss_conf 8995799668542999999835891799994889999999998514456673577050531856--41144663
No 174
>pfam04816 DUF633 Family of unknown function (DUF633). This family of proteins are uncharacterized have no known function.
Probab=98.01 E-value=5.4e-05 Score=51.65 Aligned_cols=119 Identities=14% Similarity=0.155 Sum_probs=82.6
Q ss_pred EEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCCCHHHHEECCCHHCCC
Q ss_conf 8885698569999997319--8169952135677888865310112--11112210012321115301300124310268
Q gi|254780872|r 70 ILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNI--NIDYRVSCAEEIAETDEKFDIILNMEVIEHVD 145 (254)
Q Consensus 70 VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~~--~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~ 145 (254)
|.||||--|++...|.+.| ..+++.|++++-++.|+.+....++ .|+.+.++--+...+.+..|.|+..++==.
T Consensus 1 vADIGtDHayLpi~L~~~g~~~~aiA~Dv~~gPl~~A~~~i~~~gl~~~I~~rlgdGL~~l~~~e~vd~ivIAGMGG~-- 78 (204)
T pfam04816 1 LADIGSDHAYLPIYLVKNNLASFAIAGEVNKGPLQSAVKNVKKSGLTERIDVRLGDGLAVIEELDLIDVIVIAGMGGT-- 78 (204)
T ss_pred CCEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHCCCCCCCCCEEEEECCCHH--
T ss_conf 971054508999999977998779996166749999999999759975389997784220586776577999486899--
Q ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 8889988887521333215774367660245641565543104678998571225388999999998698388855
Q gi|254780872|r 146 NIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRV 221 (254)
Q Consensus 146 d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~ 221 (254)
-....|.+-...+++-..+++. || + .+..|+.||.++||.+++=.
T Consensus 79 lI~~IL~~~~~~~~~~~~lILQ-P~-----------------------~-------~~~~lR~~L~~~g~~I~~E~ 123 (204)
T pfam04816 79 LIADILEQGKNKLAGVKRLILQ-PN-----------------------I-------NEEELREWLSQNSWQIKAET 123 (204)
T ss_pred HHHHHHHHCHHHHCCCCEEEEE-CC-----------------------C-------CHHHHHHHHHHCCCEEEEEE
T ss_conf 9999998184553575779995-79-----------------------7-------85999999998899788878
No 175
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.98 E-value=4.8e-05 Score=51.97 Aligned_cols=118 Identities=15% Similarity=0.175 Sum_probs=76.4
Q ss_pred HHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHH-HHHHCCCCEEEECCHHHHHHHHHHHHHCCC--CCCCCCCCCCC
Q ss_conf 999988651876444588001628885698569999-997319816995213567788886531011--21111221001
Q gi|254780872|r 47 IQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSE-PMAQMGATVTGIDPSTKNIAIAKNHANMKN--INIDYRVSCAE 123 (254)
Q Consensus 47 I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~-~la~~g~~V~giD~S~~~i~~Ak~~a~~~~--~~i~~~~~~~~ 123 (254)
+++.+....... .+.|.++||+=+|+|.+.. +++|-...|+.||.+.+++.+.+++.+..+ .+......++.
T Consensus 29 VREalFNil~~~-----~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~ 103 (187)
T COG0742 29 VREALFNILAPD-----EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL 103 (187)
T ss_pred HHHHHHHHCCCC-----CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECHH
T ss_conf 889999873434-----457988999468764768999857885699996598999999999998487612599840089
Q ss_pred CC-CCCCC--CHHHHEECCCHHC-CCCHHHHHHH--HHHHCCCCCEEEEECC
Q ss_conf 23-21115--3013001243102-6888899888--8752133321577436
Q gi|254780872|r 124 EI-AETDE--KFDIILNMEVIEH-VDNIPYFIKT--CCSLLLSNGLMFISTI 169 (254)
Q Consensus 124 ~l-~~~~~--~FD~V~~~~vleH-v~d~~~~l~~--~~~~LkpgG~liist~ 169 (254)
.. ..... .||+|+.-=-.+. +.++...+.. -..+|+|+|.+++.+.
T Consensus 104 ~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 104 RALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 9987227788512899689975360668999988876587788968999827
No 176
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.94 E-value=8e-05 Score=50.56 Aligned_cols=135 Identities=16% Similarity=0.262 Sum_probs=84.1
Q ss_pred CCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCC--------CCCCCCCCCCCCCC-CCCCCCHHHHE
Q ss_conf 628885698569999997319--81699521356778888653101--------12111122100123-21115301300
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMK--------NINIDYRVSCAEEI-AETDEKFDIIL 136 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~--------~~~i~~~~~~~~~l-~~~~~~FD~V~ 136 (254)
.+||=+|-|.|+-+..+.+.. -+++-+|..++||+.|+..--.. +..+.....|+-+. ....+.||+|+
T Consensus 291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vI 370 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVI 370 (508)
T ss_pred CEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHCCCCCEEE
T ss_conf 26999728751879999718885527897438899987300267666036776687569996547889974134555799
Q ss_pred ECCCHHCCCCH----------HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHH
Q ss_conf 12431026888----------89988887521333215774367660245641565543104678998571225388999
Q gi|254780872|r 137 NMEVIEHVDNI----------PYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEM 206 (254)
Q Consensus 137 ~~~vleHv~d~----------~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el 206 (254)
. .++|| ..|..-+++.|+++|.+++.-=. + | .-| +-|. .+
T Consensus 371 V-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags--~--y------------~tp------~vfw---~i 420 (508)
T COG4262 371 V-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS--P--Y------------FTP------RVFW---RI 420 (508)
T ss_pred E-----ECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCC--C--C------------CCC------CEEE---EE
T ss_conf 9-----68998995134321089999999733757549995488--7--6------------577------3011---20
Q ss_pred HHHHHHCCCEEEEEEEEEECCCCCEEEE
Q ss_conf 9999986983888550576677775786
Q gi|254780872|r 207 ECFLAANKVKIIDRVGVVYNVFCNKWQL 234 (254)
Q Consensus 207 ~~~l~~~g~~~~~~~g~~~~p~~~~w~~ 234 (254)
..-++++|+.+.-.. .+-|.++.|..
T Consensus 421 ~aTik~AG~~~~Pyh--v~VPTFGeWGf 446 (508)
T COG4262 421 DATIKSAGYRVWPYH--VHVPTFGEWGF 446 (508)
T ss_pred HHHHHHCCCEEEEEE--EECCCCCCCCE
T ss_conf 547873762553248--95476553112
No 177
>KOG1663 consensus
Probab=97.94 E-value=2.7e-05 Score=53.50 Aligned_cols=98 Identities=19% Similarity=0.261 Sum_probs=71.4
Q ss_pred HHCCEEEECCCHHHHHHHHHH---CCCCEEEECCHHHHHHHHHHHHHCCCC--CCCCCCCCCCC----CCC--CCCCHHH
Q ss_conf 016288856985699999973---198169952135677888865310112--11112210012----321--1153013
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQ---MGATVTGIDPSTKNIAIAKNHANMKNI--NIDYRVSCAEE----IAE--TDEKFDI 134 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~---~g~~V~giD~S~~~i~~Ak~~a~~~~~--~i~~~~~~~~~----l~~--~~~~FD~ 134 (254)
+.+++||||-=||+-+..+|. .+..|+++|+.+...+++....+..++ +|++.++.+-+ +.. +.++||+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCEEE
T ss_conf 87338998121278999999745999659999618688887599998606330342342525666999985579984259
Q ss_pred HEECCCHHCC-CCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 0012431026-88889988887521333215774
Q gi|254780872|r 135 ILNMEVIEHV-DNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 135 V~~~~vleHv-~d~~~~l~~~~~~LkpgG~liis 167 (254)
++.- |- .+......++.+++++||.+++.
T Consensus 153 aFvD----adK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663 153 AFVD----ADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEC----CCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 9973----66677899999998562135389992
No 178
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=97.93 E-value=4e-05 Score=52.46 Aligned_cols=107 Identities=19% Similarity=0.267 Sum_probs=68.1
Q ss_pred CHHHCCEEEECCCHHHHHHHHH----HC-----CCCEEEECCHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCC--CC
Q ss_conf 8001628885698569999997----31-----98169952135677888865310112---11112210012321--11
Q gi|254780872|r 64 PFKGLRILDLGCGGGLLSEPMA----QM-----GATVTGIDPSTKNIAIAKNHANMKNI---NIDYRVSCAEEIAE--TD 129 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~~s~~la----~~-----g~~V~giD~S~~~i~~Ak~~a~~~~~---~i~~~~~~~~~l~~--~~ 129 (254)
|-.|.+|+|-.||||-|..... +. ..++.|.|+++.+..+|+.+.-..++ +.....++.-.-+. ..
T Consensus 44 p~~~~~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~lhgi~~~~~~i~~gdsl~~~~~~~~ 123 (312)
T pfam02384 44 PKPGESIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMILHGIEYNDFGIRHGDTLLSPKFEED 123 (312)
T ss_pred CCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999882168773378999999999843785565563688998999999999998479887455214776557676654
Q ss_pred CCHHHHEECCCH-------HCC-CC--------------HHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 530130012431-------026-88--------------889988887521333215774367
Q gi|254780872|r 130 EKFDIILNMEVI-------EHV-DN--------------IPYFIKTCCSLLLSNGLMFISTIN 170 (254)
Q Consensus 130 ~~FD~V~~~~vl-------eHv-~d--------------~~~~l~~~~~~LkpgG~liist~N 170 (254)
.+||+|++.=-+ +.. .| -..+++.+...||+||+..+-.|+
T Consensus 124 ~kfD~IlsNPPFg~k~~~~~~~~~~~~~~~~~~~~~~~~e~~Fiqh~l~~Lk~~GraaiVlp~ 186 (312)
T pfam02384 124 KKFDVVVANPPFNQKWDANDNLENDPRFRAYGVPPKSNADFAFLQHIIYHLSPNGRAAVVLPN 186 (312)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 551189837864667665432102721103687888744299999999856999769999558
No 179
>pfam01269 Fibrillarin Fibrillarin.
Probab=97.93 E-value=0.00011 Score=49.61 Aligned_cols=131 Identities=21% Similarity=0.258 Sum_probs=77.1
Q ss_pred CHHHCCEEEECCCHHHHHHHHHHC-C--CCEEEECCHHHHH----HHHHHHHHCCCCCCCCCCCCCCCCCC----CCCCH
Q ss_conf 800162888569856999999731-9--8169952135677----88886531011211112210012321----11530
Q gi|254780872|r 64 PFKGLRILDLGCGGGLLSEPMAQM-G--ATVTGIDPSTKNI----AIAKNHANMKNINIDYRVSCAEEIAE----TDEKF 132 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~~s~~la~~-g--~~V~giD~S~~~i----~~Ak~~a~~~~~~i~~~~~~~~~l~~----~~~~F 132 (254)
.-.|.+||=+|.++|.-..+++.. | ..|.|||+|+.+. ..|+. ..||--..+|+.. |. .-+.-
T Consensus 71 i~~gskVLYLGAasGTTVSHvsDIvg~~G~VyAVE~spr~~RdL~~la~~-----R~NIvPIl~DAr~-P~~Y~~lv~~V 144 (229)
T pfam01269 71 IKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINVAKK-----RPNIVPILEDARH-PQKYRMLVEMV 144 (229)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHC-----CCCCEEEECCCCC-HHHHHHHCCCC
T ss_conf 58998799944777985767887228895399997173557899999742-----7994457667787-56765425566
Q ss_pred HHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHH
Q ss_conf 13001243102688889988887521333215774367660245641565543104678998571225388999999998
Q gi|254780872|r 133 DIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAA 212 (254)
Q Consensus 133 D~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~ 212 (254)
|+|++ +|-+ -..-..++.++...|||||.++++.--++..+ .. -|+ .-| ++-.+.|++
T Consensus 145 D~ifq-DvaQ-~~Qa~i~~~Na~~FLk~gG~~~l~iKA~Sid~-----------t~-~p~-----~vf---~~e~~~L~~ 202 (229)
T pfam01269 145 DVIFA-DVAQ-PDQARILALNAKYFLKNGGYFMISIKARSIDV-----------TK-EPE-----EVF---AREVEKLKE 202 (229)
T ss_pred CEEEE-CCCC-HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC-----------CC-CHH-----HHH---HHHHHHHHH
T ss_conf 68996-2787-77899999999986126988999997134216-----------78-989-----999---999999987
Q ss_pred CCCEEEEEEE
Q ss_conf 6983888550
Q gi|254780872|r 213 NKVKIIDRVG 222 (254)
Q Consensus 213 ~g~~~~~~~g 222 (254)
.||++++...
T Consensus 203 ~~~~~~e~i~ 212 (229)
T pfam01269 203 EGFKPKEQVT 212 (229)
T ss_pred CCCCEEEEEC
T ss_conf 6996589980
No 180
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=97.90 E-value=5.1e-05 Score=51.81 Aligned_cols=74 Identities=15% Similarity=0.195 Sum_probs=54.6
Q ss_pred HHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99998865187644458800162888569856999999731981699521356778888653101121111221001232
Q gi|254780872|r 47 IQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA 126 (254)
Q Consensus 47 I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~ 126 (254)
|.+++...... ..+..|||||+|.|.++..|++.+.+|++|++.+.+++..+.+.. ...+++..++|+-++.
T Consensus 18 i~~kIv~~~~~-------~~~d~VlEIGPG~G~LT~~L~~~~~~v~aiE~D~~l~~~L~~~~~-~~~~~~ii~~D~l~~d 89 (258)
T pfam00398 18 VINRIVDKANL-------QESDTVLEIGPGKGALTEELAKRAKQVVAIEIDPRLAKRLQKKLA-LHPNVEVVHQDFLKFS 89 (258)
T ss_pred HHHHHHHHCCC-------CCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHC-CCCCEEEEECCHHCCC
T ss_conf 99999997089-------999979997996239999999616947999544779999998644-2897799966301057
Q ss_pred CC
Q ss_conf 11
Q gi|254780872|r 127 ET 128 (254)
Q Consensus 127 ~~ 128 (254)
..
T Consensus 90 ~~ 91 (258)
T pfam00398 90 FP 91 (258)
T ss_pred CC
T ss_conf 54
No 181
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=97.89 E-value=2.3e-05 Score=53.91 Aligned_cols=146 Identities=16% Similarity=0.241 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCC------C
Q ss_conf 65999999988651876444588001628885698569999997319--816995213567788886531011------2
Q gi|254780872|r 42 VRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKN------I 113 (254)
Q Consensus 42 ~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~------~ 113 (254)
.|=+||...+..|....... ..++||=||-|.|-......|+. -+++-||+..+.|+..|+...... .
T Consensus 55 E~DEF~YhEMi~HvpL~~H~----NPk~VLvIGGGDGG~lREV~KH~sVE~~~lVdID~~VI~~srkyLP~~~~g~~dde 130 (284)
T TIGR00417 55 ERDEFIYHEMIAHVPLFAHP----NPKKVLVIGGGDGGVLREVVKHKSVEKATLVDIDEKVIELSRKYLPKLAAGSFDDE 130 (284)
T ss_pred CCCCHHHHHHHHHHHHHCCC----CCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCHHHHHHHHHHCHHHHCCCCCCC
T ss_conf 25443567899875653689----88547899638884687887559816799997274789998882612105665888
Q ss_pred CCCCCCCCCC-CCCCC-----CCCHHHHEECCCHHCCCCH---------HHHHHHHHHHCCCCCEEEEE-CCCCCCHHHH
Q ss_conf 1111221001-23211-----1530130012431026888---------89988887521333215774-3676602456
Q gi|254780872|r 114 NIDYRVSCAE-EIAET-----DEKFDIILNMEVIEHVDNI---------PYFIKTCCSLLLSNGLMFIS-TINRNLKAML 177 (254)
Q Consensus 114 ~i~~~~~~~~-~l~~~-----~~~FD~V~~~~vleHv~d~---------~~~l~~~~~~LkpgG~liis-t~Nr~~~s~~ 177 (254)
+++....|-- -+... .++||+|+.= -+|| +.+++.+.+.|+|+|+++.. +=| +
T Consensus 131 rv~~~i~DG~~fl~~~Gasdv~~~fDVIIvD-----stDPvGPa~~LF~~~Fy~~~~~aL~~~Gv~v~Qss~s--~---- 199 (284)
T TIGR00417 131 RVDLAIDDGFKFLRDTGASDVEKKFDVIIVD-----STDPVGPAETLFTKEFYELLKKALNEDGVIVAQSSES--P---- 199 (284)
T ss_pred EEEEEECCCHHHHHHCCCCCCCCCCCEEEEE-----CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC--C----
T ss_conf 0358982517989761522221214479972-----7789565541021799999998529998899802788--4----
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 41565543104678998571225388999999998698388855
Q gi|254780872|r 178 LAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRV 221 (254)
Q Consensus 178 ~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~ 221 (254)
|+- ..+| .++.+.++.+||..++..
T Consensus 200 -----------~~~------~~~~--~d~~r~~~~~~F~~~~~y 224 (284)
T TIGR00417 200 -----------WLQ------LELI--KDLKRKVKEVPFPITEYY 224 (284)
T ss_pred -----------CCC------HHHH--HHHHHHHHHCCCCCCEEE
T ss_conf -----------327------4888--878887752689753046
No 182
>KOG2793 consensus
Probab=97.88 E-value=5.9e-05 Score=51.37 Aligned_cols=108 Identities=26% Similarity=0.309 Sum_probs=72.0
Q ss_pred HHCCEEEECCCHHHHHHHHHH-CCCCEEEECCHHHHHHHHHHHHHCCCC-------CCCC---CCCCCCCCCCCCCC-HH
Q ss_conf 016288856985699999973-198169952135677888865310112-------1111---22100123211153-01
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQ-MGATVTGIDPSTKNIAIAKNHANMKNI-------NIDY---RVSCAEEIAETDEK-FD 133 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~-~g~~V~giD~S~~~i~~Ak~~a~~~~~-------~i~~---~~~~~~~l~~~~~~-FD 133 (254)
+.++||++|.|+|.....+|. .+++|.-.|+..-+...... ...++. ++.. .-+.+.+..+.... ||
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~-~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFN-RDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCEECCCCCHHHHHHHHHH-HHHHHHHHHHCCCCEEEEEEECCCCCCHHHCCCCCCC
T ss_conf 640589966875589999998736645127750267888886-6565666640378236998746886557552687655
Q ss_pred HHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCH
Q ss_conf 30012431026888899888875213332157743676602
Q gi|254780872|r 134 IILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLK 174 (254)
Q Consensus 134 ~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~ 174 (254)
+|++.+|+.+-..+..++..++.+|-.+|.++++|+=|...
T Consensus 165 lilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~~~ 205 (248)
T KOG2793 165 LILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRRDA 205 (248)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEECCCCH
T ss_conf 79985305517761469999999974388489998600206
No 183
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.83 E-value=0.00044 Score=45.96 Aligned_cols=122 Identities=18% Similarity=0.219 Sum_probs=80.7
Q ss_pred HCCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCCCHHHHEECCCHH
Q ss_conf 1628885698569999997319--8169952135677888865310112--11112210012321115301300124310
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNI--NIDYRVSCAEEIAETDEKFDIILNMEVIE 142 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~~--~i~~~~~~~~~l~~~~~~FD~V~~~~vle 142 (254)
+.++.||||--+++...|-+.+ ..+++.|++++.++.|.++....++ .++.++++.......+..+|+|+..+|==
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred CCCEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCH
T ss_conf 99455326762576899996598326898310667899999988745885207775268731257667768799957867
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 2688889988887521333215774367660245641565543104678998571225388999999998698388855
Q gi|254780872|r 143 HVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRV 221 (254)
Q Consensus 143 Hv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~ 221 (254)
.-...+|.+-.+.|+.--.+++ .|.+ .+.+|++||.+++|++++=+
T Consensus 97 --~lI~~ILee~~~~l~~~~rlIL------------------------QPn~-------~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 97 --TLIREILEEGKEKLKGVERLIL------------------------QPNI-------HTYELREWLSANSYEIKAET 142 (226)
T ss_pred --HHHHHHHHHHHHHHCCCCEEEE------------------------CCCC-------CHHHHHHHHHHCCCEEEEEE
T ss_conf --8999999986655057410787------------------------8887-------88999999996795144311
No 184
>PTZ00146 fibrillarin; Provisional
Probab=97.83 E-value=0.00049 Score=45.67 Aligned_cols=135 Identities=18% Similarity=0.193 Sum_probs=78.3
Q ss_pred HHCCEEEECCCHHHHHHHHHHC-C--CCEEEECCHHHH----HHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCCHHHH
Q ss_conf 0162888569856999999731-9--816995213567----7888865310112111122100123---2111530130
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM-G--ATVTGIDPSTKN----IAIAKNHANMKNINIDYRVSCAEEI---AETDEKFDII 135 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~-g--~~V~giD~S~~~----i~~Ak~~a~~~~~~i~~~~~~~~~l---~~~~~~FD~V 135 (254)
.|.+||=+|.++|.-..+++.. | ..|++||.|+.+ +.+|+. ..||--+..|+... ...-+.-|+|
T Consensus 135 ~GskVLYLGAasGTTVSHVSDIVG~~G~VYAVEfSpr~~RdLl~lA~~-----R~NIvPIleDAr~P~kYr~lV~~VDvI 209 (296)
T PTZ00146 135 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLVEMAKR-----RTNIVPIIEDARYPQKYRMLVPMVDCI 209 (296)
T ss_pred CCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHC-----CCCCEEEECCCCCHHHHHHHCCCCCEE
T ss_conf 999899851467986556665017886199997064668899999722-----798335777789746755424555589
Q ss_pred EECCCHHCCCCH-HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCC
Q ss_conf 012431026888-8998888752133321577436766024564156554310467899857122538899999999869
Q gi|254780872|r 136 LNMEVIEHVDNI-PYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANK 214 (254)
Q Consensus 136 ~~~~vleHv~d~-~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g 214 (254)
++ +|-+ +|. ..++.++...||+||.++++.-.++.-|- .++. .-| ++-.+.|++.+
T Consensus 210 f~-DVAQ--pdQarI~~~Na~~FLK~gG~~~i~IKArsIDst-------------~~p~----~VF---~~Ev~kL~~~~ 266 (296)
T PTZ00146 210 FA-DVAQ--PDQARIVALNAQHFLKNGGHFVISIKANCIDST-------------ADPE----VVF---ASEVQKLKKEG 266 (296)
T ss_pred EE-CCCC--HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-------------CCHH----HHH---HHHHHHHHHCC
T ss_conf 96-1787--658999999999853169889999972663256-------------7989----999---99999998728
Q ss_pred CEEEEEEEEEECCCCC
Q ss_conf 8388855057667777
Q gi|254780872|r 215 VKIIDRVGVVYNVFCN 230 (254)
Q Consensus 215 ~~~~~~~g~~~~p~~~ 230 (254)
|++++.. ...|+-.
T Consensus 267 f~~~e~v--~LePy~r 280 (296)
T PTZ00146 267 LKPKEQL--TLEPFER 280 (296)
T ss_pred CCEEEEE--ECCCCCC
T ss_conf 9636887--0477778
No 185
>PRK00274 ksgA dimethyladenosine transferase; Reviewed
Probab=97.82 E-value=4.7e-05 Score=52.03 Aligned_cols=56 Identities=29% Similarity=0.383 Sum_probs=45.4
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 0162888569856999999731981699521356778888653101121111221001232
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA 126 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~ 126 (254)
++..|||||+|.|.++..|.+.+..|++|++.+.+++..+.+ .+++..++|+....
T Consensus 39 ~~d~VlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~-----~~~~ii~~D~L~~~ 94 (267)
T PRK00274 39 PGDRVLEIGPGLGALTEPLLERAAKVTAIEIDRDLAPILRET-----DNLTIIEGDALKVD 94 (267)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHC-----CCEEEEECHHHHCC
T ss_conf 999079963888889999996268058863688999998504-----78699965066478
No 186
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=97.78 E-value=0.00013 Score=49.35 Aligned_cols=96 Identities=19% Similarity=0.291 Sum_probs=63.7
Q ss_pred CHHHCCEEEECCC-HHHHHHHHHH-CCC-CEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCC
Q ss_conf 8001628885698-5699999973-198-169952135677888865310112111122100123211153013001243
Q gi|254780872|r 64 PFKGLRILDLGCG-GGLLSEPMAQ-MGA-TVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEV 140 (254)
Q Consensus 64 ~l~g~~VLDiGCG-~G~~s~~la~-~g~-~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~v 140 (254)
...|.+||=+||| .|+++..+++ +|+ +|+++|++++-++.|+...... -++....+.++.....+.||+|+
T Consensus 167 ~~~g~~VlV~G~G~iGl~~~~~ak~~Ga~~Vi~~d~~~~rl~~a~~~Ga~~--~i~~~~~~~~~~~~~~g~~Dvvi---- 240 (343)
T PRK09880 167 DLQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADLSPRSLSLARQMGADV--LVNPQNDDMDHWKAEKGYFDVSF---- 240 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCE--EECCCCCCHHHHHHHCCCCCEEE----
T ss_conf 756988999847767999999999869987999979789999999729979--98798743999996369977899----
Q ss_pred HHCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 102688889988887521333215774
Q gi|254780872|r 141 IEHVDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 141 leHv~d~~~~l~~~~~~LkpgG~liis 167 (254)
+.+..+ ..++.+.++++|||.+++.
T Consensus 241 -e~~G~~-~~~~~al~~~r~gG~iv~v 265 (343)
T PRK09880 241 -EVSGHP-SSVNTCLEVTRAKGVMVQV 265 (343)
T ss_pred -EECCCH-HHHHHHHHHCCCCEEEEEE
T ss_conf -921999-9999999737798399999
No 187
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.74 E-value=0.00014 Score=49.09 Aligned_cols=91 Identities=23% Similarity=0.338 Sum_probs=63.6
Q ss_pred HHCCEEEECCC-HHHHHHHHHH-CCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHC
Q ss_conf 01628885698-5699999973-198169952135677888865310112111122100123211153013001243102
Q gi|254780872|r 66 KGLRILDLGCG-GGLLSEPMAQ-MGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEH 143 (254)
Q Consensus 66 ~g~~VLDiGCG-~G~~s~~la~-~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleH 143 (254)
.|.+|+=+|+| -|.++..+|+ +|++|+++|.|++-.+.|++-....- ++.. +.+......+.||+|+..
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~--i~~~--~~~~~~~~~~~~d~ii~t----- 236 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHV--INSS--DSDALEAVKEIADAIIDT----- 236 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEE--EECC--CCHHHHHHHHHCCEEEEC-----
T ss_conf 9989999877489999999999869969999578779999998488289--9767--811667767347399998-----
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 688889988887521333215774
Q gi|254780872|r 144 VDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 144 v~d~~~~l~~~~~~LkpgG~liis 167 (254)
++ ...+....+.|++||.+++-
T Consensus 237 v~--~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 237 VG--PATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred CC--HHHHHHHHHHHHCCCEEEEE
T ss_conf 77--45599999986429789997
No 188
>pfam03059 NAS Nicotianamine synthase protein. Nicotianamine synthase EC:2.5.1.43 catalyses the trimerisation of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is great
Probab=97.72 E-value=0.00085 Score=44.21 Aligned_cols=145 Identities=14% Similarity=0.221 Sum_probs=96.0
Q ss_pred CCEEEECCCH-HHHHHHHHHC-CC--CEEEECCHHHHHHHHHHHHHCCC---CCCCCCCCCCCCCCCCCCCHHHHEECCC
Q ss_conf 6288856985-6999999731-98--16995213567788886531011---2111122100123211153013001243
Q gi|254780872|r 68 LRILDLGCGG-GLLSEPMAQM-GA--TVTGIDPSTKNIAIAKNHANMKN---INIDYRVSCAEEIAETDEKFDIILNMEV 140 (254)
Q Consensus 68 ~~VLDiGCG~-G~~s~~la~~-g~--~V~giD~S~~~i~~Ak~~a~~~~---~~i~~~~~~~~~l~~~~~~FD~V~~~~v 140 (254)
.+|.=||||. -+-+.-|++. +. .+.++|+++.+.+.|++-.+..+ -.+.|..+++.+....-..||+|+....
T Consensus 123 ~~vAFIGSGPLPLTsivLa~~h~~~~~~~niD~d~~A~~~A~~lv~~~g~ls~~m~f~t~d~~~~~~~l~~~DvV~lAAL 202 (277)
T pfam03059 123 SRIAFIGSGPLPLTSIVLASYHLPDTSFDNYDIDGLANDRASKLVSSDPDLSSRMSFHTADVLDVTTELKAYDVVFLAAL 202 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCHHCCEEEEECCCCCCCCCCCCCCEEEEHHH
T ss_conf 44899637886138999988508873143312788999999999986553004728995264444444454768987211
Q ss_pred H-HCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEE
Q ss_conf 1-026888899888875213332157743676602456415655431046789985712253889999999986983888
Q gi|254780872|r 141 I-EHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIID 219 (254)
Q Consensus 141 l-eHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~ 219 (254)
. ---.+..+++..+.+.++||+.+++ |+-. |+--+|= |. +.|++ ..||++..
T Consensus 203 VGm~~e~K~~I~~hL~k~m~~Ga~l~~----Rsa~-------GlR~~LY--p~--------vd~~~------~~GFe~l~ 255 (277)
T pfam03059 203 VGMDKEEKAKVIDHLGKHMAPGALLVL----RSAH-------GARAFLY--PV--------VDPCD------LRGFEVLS 255 (277)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEE----ECCH-------HHHHHCC--CC--------CCHHH------CCCCEEEE
T ss_conf 354333599999999974589967999----6112-------1787628--87--------89667------38707999
Q ss_pred EEEEEECCCCCEEEECCCCCCEEEEEEEECCCC
Q ss_conf 550576677775786478864517999975877
Q gi|254780872|r 220 RVGVVYNVFCNKWQLSAKNMDVNYMVLGHLPKT 252 (254)
Q Consensus 220 ~~g~~~~p~~~~w~~~~~~~~vnY~~~~~kp~~ 252 (254)
+ ++| .+..+|=.+.++||..
T Consensus 256 ~----~hP---------~~~ViNSvI~~rk~~~ 275 (277)
T pfam03059 256 V----YHP---------TDEVINSVIVARKKIV 275 (277)
T ss_pred E----ECC---------CCCCEEEEEEEECCCC
T ss_conf 9----889---------9984113899833777
No 189
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase B; InterPro: IPR004573 This family consists of bacterial sequences related to Escherichia coli rsmB, an rRNA SAM-dependent methyltransferase. All, are likely to be functionally equivalent and based on comparison of core motifs would appear to belong to a larger superfamily of S-adenosyl-methionine (AdoMet)-dependent RNA m5C methyltransferases . In E. coli, originally, the reading frame, encoding this protein, was interpreted as two reading frames, fmu and fmv. It has since been renamed, rsmB (Alternate Gene Symbols: rrmB, sun, fmu, fmv, yhdB). The recombinant protein, commonly referred to as Fmu, has been demonstrated to methylate only C967 of the 16S ribosomal RNA and to produce only m5C at that position. . The structure of the E. coli protein (Fmu) has been determined . Fmu contains three subdomains which share structural homology to DNA m5C methyltransferases and two RNA binding protein families. The N-terminal sequence of Fmu shares homology to another (noncatalytic) RNA binding protein, e.g. the ribosomal RNA antiterminator protein NusB (IPR011605 from INTERPRO). The catalytic lobe of Fmu, N1 domain, comprises the conserved core identified in all of the putative RNA m5C MTase sequences. Although the N1 domain is structurally homologous to known RNA binding proteins, there is no clear sequence motif that defines its role in RNA binding and recognition. At the functional centre of the catalytic lobe is the MTase domain of Fmu (residues 232-429), which adopts a fold typical of known AdoMet-dependent methyltransferases. In spite of the lack of a conserved RNA binding motif in the N1 domain, the close association of the N1 and MTase domains suggest that any RNA bound in the active site of the MTase domain is likely to interact with the N1 domain. ; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing.
Probab=97.64 E-value=0.0002 Score=48.04 Aligned_cols=106 Identities=23% Similarity=0.229 Sum_probs=72.3
Q ss_pred CCHHHCCEEEECCCHHHHHHHHH---HCCCCEEEECCHHHHHHHHHHHHHCCCCC-CCC--CCCCCCCCCC---CCC---
Q ss_conf 88001628885698569999997---31981699521356778888653101121-111--2210012321---115---
Q gi|254780872|r 63 HPFKGLRILDLGCGGGLLSEPMA---QMGATVTGIDPSTKNIAIAKNHANMKNIN-IDY--RVSCAEEIAE---TDE--- 130 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~~s~~la---~~g~~V~giD~S~~~i~~Ak~~a~~~~~~-i~~--~~~~~~~l~~---~~~--- 130 (254)
.|-.+-.|||+..--|-=+-+++ ..-++|+++|+...-++.-+..+..-|+. +.. .+++...-.. +.+
T Consensus 268 ~P~~~E~iLD~CAAPGGKttHI~EL~~~~g~v~a~D~~~~rl~~~~~~~~RLGl~~i~~~~~~~~~~~~~~W~~e~~ksa 347 (487)
T TIGR00563 268 DPKNEETILDACAAPGGKTTHIAELMPDQGQVVALDLHKHRLKRVKENLDRLGLTIIKVEEVDGDKAGPKEWLAEVEKSA 347 (487)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCHHHH
T ss_conf 88988747731148457047677424797208988621257889999998618837887720256776654445201023
Q ss_pred -CHHHHE----E--CCCHHCCCCH----------------HHHHHHHHHHCCCCCEEEEEC
Q ss_conf -301300----1--2431026888----------------899888875213332157743
Q gi|254780872|r 131 -KFDIIL----N--MEVIEHVDNI----------------PYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 131 -~FD~V~----~--~~vleHv~d~----------------~~~l~~~~~~LkpgG~liist 168 (254)
+||-|. | ++||+-=||. ..+|++|..+||+||.|+.||
T Consensus 348 a~fDRiLlDaPCSg~GvirR~PD~kw~~~~~diA~L~~LQ~~iL~aiaP~vK~GGtLvYsT 408 (487)
T TIGR00563 348 AQFDRILLDAPCSGTGVIRRHPDIKWLRKPADIARLAELQKEILKAIAPLVKKGGTLVYST 408 (487)
T ss_pred HHHCEEEECCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 3314215607877443300178755566856517899999999998856535797588861
No 190
>pfam08123 DOT1 Histone methylation protein DOT1. The DOT1 domain regulates gene expression by methylating histone H3. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast.
Probab=97.62 E-value=0.00025 Score=47.49 Aligned_cols=137 Identities=16% Similarity=0.205 Sum_probs=81.6
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHH-HHCC
Q ss_conf 898899999999988746888871267751756599999998865187644458800162888569856999999-7319
Q gi|254780872|r 10 TKNQDAINQFSNIASEWWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPM-AQMG 88 (254)
Q Consensus 10 t~~~~ei~~F~~~a~~WwD~~g~~~~Lh~~N~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~l-a~~g 88 (254)
+.+.+..+++.+.+++- .|+. +| ++|.+-+.. .... .+...+|+|||.|-....+ +..|
T Consensus 6 ~p~~~~L~~Y~~fs~~v---YGEl------lp---~fis~ii~~-~~l~-------~~dvF~DLGSGVGnvv~QaAl~tg 65 (205)
T pfam08123 6 SPDANKLNHYKAFSNEV---YGEL------LP---EFLSDVLDK-CNLG-------PQDVFVDLGSGVGNCVLQAALEFG 65 (205)
T ss_pred CCCHHHHCCCCCCCCCC---CCCC------CH---HHHHHHHHH-HCCC-------CCCEEEECCCCCCHHHHHHHHHHC
T ss_conf 69967860678999755---1135------88---999999998-3989-------768899858883299999998709
Q ss_pred CC-EEEECCHHHHHHHHHH-------HHHC---CCCCCCCCCCCCCCCCCCC---CCHHHHEECCCHHCCCCHHHHHHHH
Q ss_conf 81-6995213567788886-------5310---1121111221001232111---5301300124310268888998888
Q gi|254780872|r 89 AT-VTGIDPSTKNIAIAKN-------HANM---KNINIDYRVSCAEEIAETD---EKFDIILNMEVIEHVDNIPYFIKTC 154 (254)
Q Consensus 89 ~~-V~giD~S~~~i~~Ak~-------~a~~---~~~~i~~~~~~~~~l~~~~---~~FD~V~~~~vleHv~d~~~~l~~~ 154 (254)
+. +.||++.+..-+.|+. +.+. ....+++..++..+-.... ..-|+|++.+.+- -++...-|+++
T Consensus 66 c~~s~GiEi~~~~a~~A~~~~~~~~~~~~~~G~~~~~~~l~~gdFl~~~~~~~~~~~a~VI~vNN~~F-~~~Ln~~L~e~ 144 (205)
T pfam08123 66 CKLSFGCEIMDNASNLAELQDEEFKKRCKLFGKKLGKIEFIRGSFLDNERVEEIIPEADVILVNNFAF-DPELNLQLKEM 144 (205)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCCEEEEECCCC-CHHHHHHHHHH
T ss_conf 65388888656689999999999999999958876873899777788588998634798899943246-98899999999
Q ss_pred HHHCCCCCEEEEEC
Q ss_conf 75213332157743
Q gi|254780872|r 155 CSLLLSNGLMFIST 168 (254)
Q Consensus 155 ~~~LkpgG~liist 168 (254)
..-||+|-++ +|+
T Consensus 145 f~~lk~GtkI-VS~ 157 (205)
T pfam08123 145 LQDLKDGCKI-ISL 157 (205)
T ss_pred HHCCCCCCEE-EEC
T ss_conf 9729998889-977
No 191
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.57 E-value=0.00021 Score=48.02 Aligned_cols=110 Identities=20% Similarity=0.288 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCC
Q ss_conf 659999999886518764445880016288856985699999973198169952135677888865310112-1111221
Q gi|254780872|r 42 VRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVS 120 (254)
Q Consensus 42 ~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~ 120 (254)
.|+.-.++.+.+... ..+.|+|.|+|.+|...|...-+|.+|+..+.--+.|+.+..-.+. |++...+
T Consensus 19 eRlavF~~ai~~va~-----------d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~g 87 (252)
T COG4076 19 ERLAVFTSAIAEVAE-----------DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVG 87 (252)
T ss_pred HHHHHHHHHHHHHHH-----------HCEEECCCCCCHHHHHHHHHHCEEEEEECCCHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf 999999999999864-----------105634688632889887532027887418078777650577788764689805
Q ss_pred CCCCCCCCCCCHHHHEECCCHHC--C-CCHHHHHHHHHHHCCCCCEEE
Q ss_conf 00123211153013001243102--6-888899888875213332157
Q gi|254780872|r 121 CAEEIAETDEKFDIILNMEVIEH--V-DNIPYFIKTCCSLLLSNGLMF 165 (254)
Q Consensus 121 ~~~~l~~~~~~FD~V~~~~vleH--v-~d~~~~l~~~~~~LkpgG~li 165 (254)
++.+..+ +.-|+|+| ++|.- + .....+++.+.+.|+-++.++
T Consensus 88 DA~~y~f--e~ADvvic-EmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 88 DARDYDF--ENADVVIC-EMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred CCCCCCC--CCCCEEHH-HHHHHHHHCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 5321332--34534087-776677633421289999999863388252
No 192
>KOG1709 consensus
Probab=97.56 E-value=0.0002 Score=48.11 Aligned_cols=105 Identities=20% Similarity=0.231 Sum_probs=70.1
Q ss_pred HHHCCEEEECCCHHHHHHHHHHCC-CCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCHHHHEECCCH
Q ss_conf 001628885698569999997319-81699521356778888653101121111221001232--111530130012431
Q gi|254780872|r 65 FKGLRILDLGCGGGLLSEPMAQMG-ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA--ETDEKFDIILNMEVI 141 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s~~la~~g-~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~--~~~~~FD~V~~~~vl 141 (254)
.+|.+||+||-|-|+..-.+-+.. ..-+=|+..+..++.-|..+-...-|+-...+.=++.. ..++.||.|+---.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred HCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECCHHHHHCCCCCCCCCEEEEECHH
T ss_conf 17964898423167788888635986317873597899999863665445468871346764401445675626751301
Q ss_pred HCCCCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 026888899888875213332157743676
Q gi|254780872|r 142 EHVDNIPYFIKTCCSLLLSNGLMFISTINR 171 (254)
Q Consensus 142 eHv~d~~~~l~~~~~~LkpgG~liist~Nr 171 (254)
||-.|...+.+.+.++|||+|.+ |..|-
T Consensus 180 e~yEdl~~~hqh~~rLLkP~gv~--SyfNg 207 (271)
T KOG1709 180 ELYEDLRHFHQHVVRLLKPEGVF--SYFNG 207 (271)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEE--EEECC
T ss_conf 67899999998776400877448--88437
No 193
>KOG2730 consensus
Probab=97.54 E-value=7e-05 Score=50.92 Aligned_cols=97 Identities=21% Similarity=0.153 Sum_probs=67.7
Q ss_pred CCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCCCHH-----HHEECCC
Q ss_conf 6288856985699999973198169952135677888865310112--11112210012321115301-----3001243
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI--NIDYRVSCAEEIAETDEKFD-----IILNMEV 140 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~--~i~~~~~~~~~l~~~~~~FD-----~V~~~~v 140 (254)
..|+|.-||.|--+..+|..|..|.+||+++--|..||.+++.-|+ .|.|.++|..++.. .-+|| +|+.+.-
T Consensus 96 ~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~-~lq~~K~~~~~vf~spp 174 (263)
T KOG2730 96 EVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLAS-KLKADKIKYDCVFLSPP 174 (263)
T ss_pred CHHHHHHHCCCCHHHHHHHHCCEEEEEECCHHHHHHHHCCCEEECCCCEEEEEECHHHHHHH-HHHHHHHEEEEEECCCC
T ss_conf 30025453688428899871880799852678888776065032577505888330999999-88641010456616999
Q ss_pred HHCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 1026888899888875213332157
Q gi|254780872|r 141 IEHVDNIPYFIKTCCSLLLSNGLMF 165 (254)
Q Consensus 141 leHv~d~~~~l~~~~~~LkpgG~li 165 (254)
--.-.....-+..+...++|.|.-+
T Consensus 175 wggp~y~~~~~~DL~~~~~p~~~~~ 199 (263)
T KOG2730 175 WGGPSYLRADVYDLETHLKPMGTKI 199 (263)
T ss_pred CCCCCHHHHHHHHHHHHCCHHHHHH
T ss_conf 9996313320310201055148999
No 194
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase; InterPro: IPR011023 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are primarily restricted to the euryarchaeota and proteobacteria respectively; where they are either described as either nucleolar protein or tRNA/rRNA cytosine-C5-methylase. They all have the S-adenosyl methionine (SAM) binding domain and are related to bacterial Fmu (16S rRNA m5C 967 methyltransferase) where the structure of the methyl transferase domain has been determined . In the eukaryota, the majority are annotated as being 'nucleolar protein'. None of the eukaryotic members in this family have a the SAM binding signature. Despite this, the yeast Nop2p is a probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis ; localised to the nucleolus and is essential for viability . Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing . There is substantial identity between Nop2p and human p120 (NOL1), which is also called the proliferation-associated nucleolar antigen , . .
Probab=97.54 E-value=0.00038 Score=46.36 Aligned_cols=122 Identities=19% Similarity=0.213 Sum_probs=83.6
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHH----HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCC
Q ss_conf 999998865187644458800162888569856----99999973198169952135677888865310112-1111221
Q gi|254780872|r 46 YIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGG----LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVS 120 (254)
Q Consensus 46 ~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G----~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~ 120 (254)
|+.+.....++-.......-.+.+|||+...-| .+|..|...| -|+|+|++..=++.-..+....|. |+-..+.
T Consensus 57 y~~q~aSSmiPp~aL~p~Gn~~~~vlD~AAaPGgKTT~is~~m~N~G-~i~Ane~~ksR~k~L~~NI~R~G~~n~~v~~~ 135 (284)
T TIGR00446 57 YYVQEASSMIPPLALEPEGNEKERVLDMAAAPGGKTTQISALMKNEG-AIVANEVSKSRTKVLIANINRMGVLNVAVINV 135 (284)
T ss_pred HHHHHHHHCCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCC-EEEEECCCCCCCHHHHHHHHHHHHEEEEEEEC
T ss_conf 89987873676030177876888799974088964899999865885-18997376341066786555621003332413
Q ss_pred CCCCCCCCCCC----HHHHE----EC--CCHHC---------------CCC-HHHHHHHHHHHCCC----CCEEEEEC
Q ss_conf 00123211153----01300----12--43102---------------688-88998888752133----32157743
Q gi|254780872|r 121 CAEEIAETDEK----FDIIL----NM--EVIEH---------------VDN-IPYFIKTCCSLLLS----NGLMFIST 168 (254)
Q Consensus 121 ~~~~l~~~~~~----FD~V~----~~--~vleH---------------v~d-~~~~l~~~~~~Lkp----gG~liist 168 (254)
|...++..-.+ ||.|. |+ +|++= ++. ...+|-..+..||| ||.+|.||
T Consensus 136 DgR~f~~~~~~~eifFD~iLLDAPCSG~GvI~KD~~~~~~~~~eD~~~~s~lQkeL~~~A~d~lk~nskhGGv~VYST 213 (284)
T TIGR00446 136 DGRKFGAVVLKMEIFFDRILLDAPCSGEGVIRKDPSRKKNRSEEDILEISKLQKELILAAFDALKPNSKHGGVLVYST 213 (284)
T ss_pred CCCHHHHHHCCCEEEEEEEEECCCCCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf 763001231443034321452578798833765723311477245776467679999999875044566688889850
No 195
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=97.48 E-value=0.00076 Score=44.49 Aligned_cols=133 Identities=20% Similarity=0.268 Sum_probs=71.9
Q ss_pred CCEEEECCC-HH-HHHHHHHHCCCCEEEECCHHHHHHHHHH---HHHCCCCCCCCC-CCCC------CCCCCCCCCHHHH
Q ss_conf 628885698-56-9999997319816995213567788886---531011211112-2100------1232111530130
Q gi|254780872|r 68 LRILDLGCG-GG-LLSEPMAQMGATVTGIDPSTKNIAIAKN---HANMKNINIDYR-VSCA------EEIAETDEKFDII 135 (254)
Q Consensus 68 ~~VLDiGCG-~G-~~s~~la~~g~~V~giD~S~~~i~~Ak~---~a~~~~~~i~~~-~~~~------~~l~~~~~~FD~V 135 (254)
++|-=||+| -| -++..+|+.|++|+|+|++++-++.-+. ...+.+++ ++. .... .+....-..-|+|
T Consensus 1 MkI~ViGlGyVGl~~a~~la~~G~~V~g~D~d~~~v~~ln~g~~p~~E~~l~-~~l~~~~~~~~~~~~~~~~~i~~~d~i 79 (185)
T pfam03721 1 MRIAVIGLGYVGLPTAVCLAEIGHDVVGVDINQSKIDKLNNGKIPIYEPGLE-ELLKANVSGRLRFTTDVAEAIKEADVI 79 (185)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCCCCCCHH-HHHHHHHCCCEEEECCHHHHHHHCCEE
T ss_conf 9799989787489999999948993999979989999986268974675889-999873408969987879988449899
Q ss_pred E-ECCC--HH-CCCC---HHHHHHHHHHHCCCCCEEEE-ECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHH
Q ss_conf 0-1243--10-2688---88998888752133321577-43676602456415655431046789985712253889999
Q gi|254780872|r 136 L-NMEV--IE-HVDN---IPYFIKTCCSLLLSNGLMFI-STINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEME 207 (254)
Q Consensus 136 ~-~~~v--le-Hv~d---~~~~l~~~~~~LkpgG~lii-st~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~ 207 (254)
+ |... -+ .-+| ...+++++.+.+++|-.+++ || +|+|| +...+.
T Consensus 80 ~I~VpTP~~~~~~~d~s~l~~~~~~i~~~l~~~~liii~ST---------------------VppGt-------t~~~~~ 131 (185)
T pfam03721 80 FIAVPTPSKKGGAPDLTYVESAARTIGPVLKKGKVVVVKST---------------------VPPGT-------TEEVVK 131 (185)
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC---------------------CCCCC-------HHHHHH
T ss_conf 99736876557676635999999999744679989999189---------------------99886-------899999
Q ss_pred HHHHHCCCEEEEEEEEEECCCC
Q ss_conf 9999869838885505766777
Q gi|254780872|r 208 CFLAANKVKIIDRVGVVYNVFC 229 (254)
Q Consensus 208 ~~l~~~g~~~~~~~g~~~~p~~ 229 (254)
.++++.+...-.--.+.|+|-+
T Consensus 132 ~l~~~~~~~~~~d~~l~~~PEr 153 (185)
T pfam03721 132 PILEKRSGKKAVDFNVASNPEF 153 (185)
T ss_pred HHHHHCCCCCCCCEEEEECHHH
T ss_conf 9999726677874489878332
No 196
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.48 E-value=0.00067 Score=44.85 Aligned_cols=134 Identities=19% Similarity=0.172 Sum_probs=88.9
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHH--HHHHHHC-----------CCCCCCCCCCCCCCCCC---CC
Q ss_conf 01628885698569999997319816995213567788--8865310-----------11211112210012321---11
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAI--AKNHANM-----------KNINIDYRVSCAEEIAE---TD 129 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~--Ak~~a~~-----------~~~~i~~~~~~~~~l~~---~~ 129 (254)
.+.+|+==.||-..-...|+..|++|+|||+|+.+++. +...... ...+|+..++|+-+++. .-
T Consensus 43 ~~~rVfVPLCGKSlDm~WLa~qG~~VvGvELse~Av~~FF~E~~l~~~v~~~~~~~~y~~~~I~i~~GD~F~L~~~~~~l 122 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CCCEEEEECCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCCCEEECCCCCEEEECCCEEEEECCCCCCCCHHCCC
T ss_conf 99869996788789899999789825643101899999999769984551378812885188769963621586201157
Q ss_pred CCHHHHEECCCHHCCCC--HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHH
Q ss_conf 53013001243102688--8899888875213332157743676602456415655431046789985712253889999
Q gi|254780872|r 130 EKFDIILNMEVIEHVDN--IPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEME 207 (254)
Q Consensus 130 ~~FD~V~~~~vleHv~d--~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~ 207 (254)
+.||.|+=-..|--+|. .....+.+..+|+||+.+++-|+.-... ..+ |+ --++++|+.
T Consensus 123 g~~daiYDRAALVALP~~mR~~Ya~~L~~ll~~~~~~LLitl~Y~q~-----------~~g--PP------FsV~~~EV~ 183 (226)
T PRK13256 123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKK-----------SQT--PP------YSVTQAELI 183 (226)
T ss_pred CCCCEEEEEHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC-----------CCC--CC------CCCCHHHHH
T ss_conf 64036974022531998999999999998658777099999864754-----------579--49------979999999
Q ss_pred HHHHHCCCEEEE
Q ss_conf 999986983888
Q gi|254780872|r 208 CFLAANKVKIID 219 (254)
Q Consensus 208 ~~l~~~g~~~~~ 219 (254)
++.... |++.-
T Consensus 184 ~lf~~~-~~iel 194 (226)
T PRK13256 184 KNFSAK-IKFEL 194 (226)
T ss_pred HHHCCC-CEEEE
T ss_conf 984898-53899
No 197
>KOG0820 consensus
Probab=97.47 E-value=0.00042 Score=46.13 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=50.5
Q ss_pred HCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCHHHHEE
Q ss_conf 1628885698569999997319816995213567788886531011--2111122100123211153013001
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKN--INIDYRVSCAEEIAETDEKFDIILN 137 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~--~~i~~~~~~~~~l~~~~~~FD~V~~ 137 (254)
+.-|||||-|||.++..|-+.|++|+++++.+.|+.....+..... ..+...+++.-.. +.-.||.+++
T Consensus 59 tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~--d~P~fd~cVs 129 (315)
T KOG0820 59 TDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT--DLPRFDGCVS 129 (315)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCCCEEEEEECCCCCC--CCCCCCEEEC
T ss_conf 8779995798778999999720848999408078999999866998656046885031257--8851031122
No 198
>pfam03269 DUF268 Caenorhabditis protein of unknown function, DUF268.
Probab=97.40 E-value=0.00027 Score=47.28 Aligned_cols=97 Identities=22% Similarity=0.292 Sum_probs=61.2
Q ss_pred HHCCEEEECCCHHHHHHHHH-HCCC-CEEEECCHHHHHHH-HHHHHHCCCC-CCCCCCCCCCCCCCCCCCHHHHEECCCH
Q ss_conf 01628885698569999997-3198-16995213567788-8865310112-1111221001232111530130012431
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMA-QMGA-TVTGIDPSTKNIAI-AKNHANMKNI-NIDYRVSCAEEIAETDEKFDIILNMEVI 141 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la-~~g~-~V~giD~S~~~i~~-Ak~~a~~~~~-~i~~~~~~~~~l~~~~~~FD~V~~~~vl 141 (254)
+|+++|=||+=.=.+ |.++ ..|+ +|+-|+...--++. ++.+ .... ..+| ..+.....++||+++++..+
T Consensus 1 ~gk~glVvGS~~PWv-E~~aL~~GA~~vlTvEYn~l~i~~~~~~r--lssi~p~ef----~~~~~~~~~~FD~a~SfSSi 73 (177)
T pfam03269 1 DGKSGVVIGSMQPWV-EVSALQNGASKILTVEYNKLTIQEEFRDR--LSSILPTDF----AKNFKKYAESFDFAASFSSI 73 (177)
T ss_pred CCCEEEEECCCCHHH-HHHHHHCCCCCEEEEEECCCCCCCHHHHC--CCCCCHHHH----HHHHHHHCCCEEEEEEEEEE
T ss_conf 995189984775399-99999818873489972355566133210--011568899----99987523532389996124
Q ss_pred HCC-----C---CH---HHHHHHHHHHCCCCCEEEEECC
Q ss_conf 026-----8---88---8998888752133321577436
Q gi|254780872|r 142 EHV-----D---NI---PYFIKTCCSLLLSNGLMFISTI 169 (254)
Q Consensus 142 eHv-----~---d~---~~~l~~~~~~LkpgG~liist~ 169 (254)
||. . || .+.++++.++|||||.++++.|
T Consensus 74 EH~GLGRYGDpidp~Gdlk~m~~i~~~Lk~~G~l~l~vP 112 (177)
T pfam03269 74 EHSGLGRYGDPIDPIGDLREMLKIKCVLKKGGLLFLGLP 112 (177)
T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 440565568977985109999999986178967999953
No 199
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=97.34 E-value=0.0009 Score=44.05 Aligned_cols=98 Identities=21% Similarity=0.287 Sum_probs=59.1
Q ss_pred CCHHHCCEEEECCC-HHHHHHHHH-HCCC-CEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECC
Q ss_conf 88001628885698-569999997-3198-16995213567788886531011211112210012321115301300124
Q gi|254780872|r 63 HPFKGLRILDLGCG-GGLLSEPMA-QMGA-TVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNME 139 (254)
Q Consensus 63 ~~l~g~~VLDiGCG-~G~~s~~la-~~g~-~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~ 139 (254)
.+..|.+||=+||| .|+++..++ .+|+ +|+++|+++.-++.|++-....-.+-+-. .+..........+|+|+-
T Consensus 117 ~~~~g~~V~V~G~G~iGl~~~~~a~~~Ga~~Vi~~d~~~~rl~~a~~~Ga~~~i~~~~~-~~~~~~~~~g~g~D~vie-- 193 (280)
T TIGR03366 117 GDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVL-AERQGGLQNGRGVDVALE-- 193 (280)
T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECCCCH-HHHHHHHHCCCCCCEEEE--
T ss_conf 78999989999078689999999998499879999199899999997399898377577-999999727888709998--
Q ss_pred CHHCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 3102688889988887521333215774
Q gi|254780872|r 140 VIEHVDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 140 vleHv~d~~~~l~~~~~~LkpgG~liis 167 (254)
.+.. ...++.+.++|+|||.+++-
T Consensus 194 ---~~G~-~~~~~~a~~~l~~gG~iv~v 217 (280)
T TIGR03366 194 ---FSGA-TAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred ---CCCC-HHHHHHHHHHHHCCCEEEEE
T ss_conf ---7898-89999999986049899998
No 200
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=97.30 E-value=0.00098 Score=43.81 Aligned_cols=95 Identities=17% Similarity=0.205 Sum_probs=60.4
Q ss_pred HHHCCEEEECCC-HHHHHHHHHH-CCC-CEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCC--CCCCHHHHEEC
Q ss_conf 001628885698-5699999973-198-16995213567788886531011211112210012-321--11530130012
Q gi|254780872|r 65 FKGLRILDLGCG-GGLLSEPMAQ-MGA-TVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE-IAE--TDEKFDIILNM 138 (254)
Q Consensus 65 l~g~~VLDiGCG-~G~~s~~la~-~g~-~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~-l~~--~~~~FD~V~~~ 138 (254)
-.|.+||=+||| .|+++..+++ .|+ .|+++|.++.-++.|+...... -++....+..+ ... ...-+|+|+-
T Consensus 175 ~~g~~VlV~GaG~iGl~a~~~ak~~Ga~~Vi~~d~~~~rl~~A~~lGa~~--~i~~~~~~~~~~v~~~t~g~G~Dvvie- 251 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATH--TVNSSGTDPVEAIRALTGGFGADVVID- 251 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEE--EECCCCCCHHHHHHHHHCCCCCCEEEE-
T ss_conf 99988999673769999999999839918999919889999999659909--973998788999999858988749999-
Q ss_pred CCHHCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 43102688889988887521333215774
Q gi|254780872|r 139 EVIEHVDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 139 ~vleHv~d~~~~l~~~~~~LkpgG~liis 167 (254)
-+..+ ..++...++++|||.+++-
T Consensus 252 ----~~G~~-~~~~~al~~~~~gG~iv~~ 275 (358)
T TIGR03451 252 ----AVGRP-ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred ----CCCCH-HHHHHHHHHHCCCCEEEEE
T ss_conf ----99998-9999999976279699999
No 201
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.004 Score=40.04 Aligned_cols=142 Identities=17% Similarity=0.271 Sum_probs=83.3
Q ss_pred HHCCEEEECCCHHHHHHHHHHC-C-CCEEEECCHHHHHH----HHHHHHHCCCCCCCCCCCCCCCC---CCCCCCHHHHE
Q ss_conf 0162888569856999999731-9-81699521356778----88865310112111122100123---21115301300
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM-G-ATVTGIDPSTKNIA----IAKNHANMKNINIDYRVSCAEEI---AETDEKFDIIL 136 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~-g-~~V~giD~S~~~i~----~Ak~~a~~~~~~i~~~~~~~~~l---~~~~~~FD~V~ 136 (254)
.|.+||=+|..+|.-..+++.. | ..|.||+.|+.+.. .|+. ..||--..+|+... ...-+.-|+|+
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-----R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-----RPNIIPILEDARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred CCCEEEEEECCCCCCHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHH-----CCCCEEEECCCCCCHHHHHHCCCCCEEE
T ss_conf 99878995036798576777604787089999644469999999874-----7874002013688377653124543899
Q ss_pred ECCCHHCCCCH---HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHC
Q ss_conf 12431026888---899888875213332157743676602456415655431046789985712253889999999986
Q gi|254780872|r 137 NMEVIEHVDNI---PYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAAN 213 (254)
Q Consensus 137 ~~~vleHv~d~---~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~ 213 (254)
+ -|..| .-+..++...||+||.++++.-.|+..+ |-+... +. ++-...|+..
T Consensus 151 ~-----DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdv------------------T~dp~~-vf-~~ev~kL~~~ 205 (231)
T COG1889 151 Q-----DVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDV------------------TADPEE-VF-KDEVEKLEEG 205 (231)
T ss_pred E-----ECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCC------------------CCCHHH-HH-HHHHHHHHHC
T ss_conf 8-----368810789999889973216973999998512304------------------589899-99-9999999856
Q ss_pred CCEEEEEEEEEECCCCCEEEECCCCCCEEEEEEEEC
Q ss_conf 983888550576677775786478864517999975
Q gi|254780872|r 214 KVKIIDRVGVVYNVFCNKWQLSAKNMDVNYMVLGHL 249 (254)
Q Consensus 214 g~~~~~~~g~~~~p~~~~w~~~~~~~~vnY~~~~~k 249 (254)
||++++...+ .|+-. | +++++++.
T Consensus 206 ~f~i~e~~~L--ePye~-------D---H~~i~~~~ 229 (231)
T COG1889 206 GFEILEVVDL--EPYEK-------D---HALIVAKY 229 (231)
T ss_pred CCEEEEEECC--CCCCC-------C---EEEEEEEE
T ss_conf 9504677636--77666-------4---28999962
No 202
>KOG2920 consensus
Probab=97.24 E-value=0.00021 Score=47.98 Aligned_cols=103 Identities=24% Similarity=0.412 Sum_probs=62.8
Q ss_pred HHHCCEEEECCCHHHHHHHHHHCC-CCEEEECCHHHHHHH-------HHHHHH----CCCCCCCCCCCCCCC--CCCCC-
Q ss_conf 001628885698569999997319-816995213567788-------886531----011211112210012--32111-
Q gi|254780872|r 65 FKGLRILDLGCGGGLLSEPMAQMG-ATVTGIDPSTKNIAI-------AKNHAN----MKNINIDYRVSCAEE--IAETD- 129 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s~~la~~g-~~V~giD~S~~~i~~-------Ak~~a~----~~~~~i~~~~~~~~~--l~~~~- 129 (254)
..|++|||+|||.|+-.......| ..|...|.+...++. ++-++. +...-.........+ +....
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ECCCEEEECCCCCCCCCHHHHHHCCCEEEEEECCHHHEEEECCCCEECCHHHHHHHHHCCCCEECCCCCCCCCHHHHCCC
T ss_conf 44755686378645641666640353233473351124652146533020010234413652121234332201000033
Q ss_pred CCHHHHEECCCHHCCCCHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf 530130012431026888899-88887521333215774
Q gi|254780872|r 130 EKFDIILNMEVIEHVDNIPYF-IKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 130 ~~FD~V~~~~vleHv~d~~~~-l~~~~~~LkpgG~liis 167 (254)
..||+|.+++.+.-.+..+.+ ......+++++|.++.+
T Consensus 195 ~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920 195 THYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 111221103555176304556766665227765025665
No 203
>KOG2915 consensus
Probab=97.23 E-value=0.0013 Score=43.01 Aligned_cols=97 Identities=18% Similarity=0.118 Sum_probs=72.3
Q ss_pred HHCCEEEECCCHHHHHHHHHHCC---CCEEEECCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCC--CCCCHHHHEEC
Q ss_conf 01628885698569999997319---8169952135677888865310112--11112210012321--11530130012
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMG---ATVTGIDPSTKNIAIAKNHANMKNI--NIDYRVSCAEEIAE--TDEKFDIILNM 138 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g---~~V~giD~S~~~i~~Ak~~a~~~~~--~i~~~~~~~~~l~~--~~~~FD~V~~~ 138 (254)
.|..|+|-|.|+|-+|.++++.- ..+.-.|.-+.--+.|++..++.++ ++++.+-|+-...+ ....+|.|+.
T Consensus 105 PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFL- 183 (314)
T KOG2915 105 PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVFL- 183 (314)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEE-
T ss_conf 9978986378863488999986376762699983287899999999973778634899964156773531342356997-
Q ss_pred CCHHCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 43102688889988887521333215774
Q gi|254780872|r 139 EVIEHVDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 139 ~vleHv~d~~~~l~~~~~~LkpgG~liis 167 (254)
-++.|..++-.++++||-+|.-+++
T Consensus 184 ----DlPaPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915 184 ----DLPAPWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred ----CCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf ----5898055223367775406825996
No 204
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=97.19 E-value=0.0015 Score=42.69 Aligned_cols=99 Identities=20% Similarity=0.253 Sum_probs=58.7
Q ss_pred HHHCCEEEECCC-HHHHHHHHHH-CCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC------CCCHHHHE
Q ss_conf 001628885698-5699999973-198169952135677888865310112111122100123211------15301300
Q gi|254780872|r 65 FKGLRILDLGCG-GGLLSEPMAQ-MGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAET------DEKFDIIL 136 (254)
Q Consensus 65 l~g~~VLDiGCG-~G~~s~~la~-~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~------~~~FD~V~ 136 (254)
-.|.+|+=+||| .|.++..+++ +|++|+++|.++.-++.|++.... .-++....+.+++... ..-.|...
T Consensus 165 ~~g~~V~V~G~G~iGl~a~~~ak~~Ga~Vi~vd~~~~rle~a~~~Ga~--~~i~~~~~~~~~~~~~~~~~~~~~G~~~~~ 242 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGAD--LTLNPKDKSAREVKKLIKAFAKARGLRSTG 242 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCC--EEECCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 999889998974899999999998599799994999999999964998--998787677899999997541456756556
Q ss_pred ECCCHHCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 1243102688889988887521333215774
Q gi|254780872|r 137 NMEVIEHVDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 137 ~~~vleHv~d~~~~l~~~~~~LkpgG~liis 167 (254)
.-|++-+-. ...++...+++++||.+++-
T Consensus 243 -~~v~e~~G~-~~~~~~a~~~~~~gG~iv~v 271 (349)
T TIGR03201 243 -WKIFECSGS-KPGQESALSLLSHGGTLVVV 271 (349)
T ss_pred -CEEEEECCC-HHHHHHHHHHCCCCCEEEEE
T ss_conf -369982488-89999999973589799997
No 205
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.16 E-value=0.0015 Score=42.66 Aligned_cols=99 Identities=17% Similarity=0.254 Sum_probs=75.0
Q ss_pred HHCCEEEECCCHHHHHHHHH-HCC-CCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCC-CCCCHHHHEECCCH
Q ss_conf 01628885698569999997-319-8169952135677888865310112-11112210012321-11530130012431
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMA-QMG-ATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAE-TDEKFDIILNMEVI 141 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la-~~g-~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~-~~~~FD~V~~~~vl 141 (254)
.+.+|||.=||+|+=+...+ +.| ..|+.-|+++++++..+.+.+.+++ +++..+.++..+.. ..+.||+|=.-
T Consensus 51 ~~~~ilDalsasGiR~iRy~~E~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~v~~~dAn~lm~~~~~~fD~IDlD--- 127 (376)
T PRK04338 51 RRKSVLDALSASGIRGIRYALETGVEKVILNDINPDAVELIKKNLELNGLENAEVFNEDANVLLHENERKFDVVDID--- 127 (376)
T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCEEEEC---
T ss_conf 69768740676549999998727998799956999999999999998299826981324899998378758778678---
Q ss_pred HCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 026888899888875213332157743
Q gi|254780872|r 142 EHVDNIPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 142 eHv~d~~~~l~~~~~~LkpgG~liist 168 (254)
=.--|..+|..+.+.++.||.|.++.
T Consensus 128 -PfGSp~pflDsAi~~v~~~GlL~vTa 153 (376)
T PRK04338 128 -PFGSPAPFLDSAIRALRRGGLLCVTA 153 (376)
T ss_pred -CCCCCCHHHHHHHHHHHCCCEEEEEE
T ss_conf -99992087999999840398899994
No 206
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=97.13 E-value=0.0024 Score=41.45 Aligned_cols=99 Identities=23% Similarity=0.365 Sum_probs=62.4
Q ss_pred CCCHHHCCEEEECCC-HHHHHHHHHH-CCCC-EEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCHHHHE
Q ss_conf 588001628885698-5699999973-1981-6995213567788886531011211112210012321--115301300
Q gi|254780872|r 62 THPFKGLRILDLGCG-GGLLSEPMAQ-MGAT-VTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAE--TDEKFDIIL 136 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG-~G~~s~~la~-~g~~-V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~--~~~~FD~V~ 136 (254)
.....|.+||=+|+| .|+++..+++ .|++ |+++|.|++-++.|++..... -+++...+.++... ....||-|
T Consensus 156 ~~~~~g~~vlV~GaG~vGl~aiq~ak~~Ga~~V~~~d~~~~kl~~a~~lGAd~--~i~~~~~~~~~~~~~~~~~~~d~v- 232 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQ--TFNSREMSAPQIQSVLRELRFDQL- 232 (347)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCE--EECCCCCCHHHHHHHHCCCCCCEE-
T ss_conf 05888986999899838999999999859976999928999999999729989--986887799999998629988869-
Q ss_pred ECCCHHCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 1243102688889988887521333215774
Q gi|254780872|r 137 NMEVIEHVDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 137 ~~~vleHv~d~~~~l~~~~~~LkpgG~liis 167 (254)
|++-+-.+ ..++.+.++++|+|.+++-
T Consensus 233 ---vid~~G~~-~~~~~a~~~~~~~G~iv~~ 259 (347)
T PRK10309 233 ---ILETAGVP-QTVELAIEIAGPRAQLALV 259 (347)
T ss_pred ---EEECCCCH-HHHHHHHHHHCCCEEEEEE
T ss_conf ---99799998-9999999961897499998
No 207
>KOG1122 consensus
Probab=97.12 E-value=0.0011 Score=43.45 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=68.9
Q ss_pred CCCCHHHCCEEEECCCHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCC--CCCCHHH
Q ss_conf 458800162888569856999999731---98169952135677888865310112111-12210012321--1153013
Q gi|254780872|r 61 DTHPFKGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNINID-YRVSCAEEIAE--TDEKFDI 134 (254)
Q Consensus 61 ~~~~l~g~~VLDiGCG~G~~s~~la~~---g~~V~giD~S~~~i~~Ak~~a~~~~~~i~-~~~~~~~~l~~--~~~~FD~ 134 (254)
...|-.|.+|||..+-.|-=+-++|.+ -..|.+-|.+.+-++.-+..+...+.+-. ....+...++. ...+||-
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred ECCCCCCCEECCHHCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCE
T ss_conf 20799887112121079950778999872774699613543779999988997487744897367632553336764231
Q ss_pred HE----ECC--CHHC----------------CCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 00----124--3102----------------6888899888875213332157743
Q gi|254780872|r 135 IL----NME--VIEH----------------VDNIPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 135 V~----~~~--vleH----------------v~d~~~~l~~~~~~LkpgG~liist 168 (254)
|. |++ |+.- ..=....|-....+++|||+|+.||
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 45348777775554551013301299998727999999999873115770899985
No 208
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU; InterPro: IPR014088 Members of this protein family include S-adenosylmethionine-dependent C-20 methyltransferase (BchU), part of the pathway of bacteriochlorophyll c production in photosynthetic green sulphur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produce bacteriochlorophyll d..
Probab=97.10 E-value=0.0096 Score=37.66 Aligned_cols=165 Identities=15% Similarity=0.157 Sum_probs=95.8
Q ss_pred HHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 677517565999999988651876444588001628885698569999997319--816995213567788886531011
Q gi|254780872|r 35 PLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKN 112 (254)
Q Consensus 35 ~Lh~~N~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~ 112 (254)
.+|+=| +++..+-+.+..+... =++.+|||.|-|-.|.+|.+.- -++|-+-+ +.+|+..+.++..+|
T Consensus 128 ~~HRSN---~~l~~~LL~~~A~L~~-------V~~lIDVGGGIGDI~AAl~~~FP~L~~T~~NL-P~A~DLV~EN~A~KG 196 (306)
T TIGR02716 128 ELHRSN---IKLAIELLLKRAKLDD-------VKKLIDVGGGIGDIAAALLKAFPELDVTLLNL-PSALDLVRENVAEKG 196 (306)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHC-------CCEEEECCCCHHHHHHHHHHHCCCCCEEEECC-CCHHHHHHHHHHHCC
T ss_conf 776768---9999999998751631-------32543338887789999997377523231205-405567766554145
Q ss_pred CC--CCCCCCCCCCCCCCCCCHHHHEECCCHHCCCCHH--HHHHHHHHHCCCCCEEEE-----ECCCCCCHHHHH-HHHH
Q ss_conf 21--1112210012321115301300124310268888--998888752133321577-----436766024564-1565
Q gi|254780872|r 113 IN--IDYRVSCAEEIAETDEKFDIILNMEVIEHVDNIP--YFIKTCCSLLLSNGLMFI-----STINRNLKAMLL-AIIG 182 (254)
Q Consensus 113 ~~--i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d~~--~~l~~~~~~LkpgG~lii-----st~Nr~~~s~~~-~i~~ 182 (254)
+. ++-+..|+..=+++. -|.|..+-+|.-....- -.+++.+..|+.||++.| +.||.--..|+. .|.+
T Consensus 197 ~ADR~~~~A~D~Y~E~YP~--~DAVLF~RILY~~N~Ql~T~l~~KAyDAl~SGGR~LILDMVI~DP~~PNyDYL~HY~~~ 274 (306)
T TIGR02716 197 LADRIRGVAVDIYKESYPE--ADAVLFSRILYSANEQLSTILLKKAYDALRSGGRLLILDMVIDDPENPNYDYLSHYLLA 274 (306)
T ss_pred CCCCCCCEEEEECCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 1004663156503387577--11656778876446789999999887522578807865434318567771468999987
Q ss_pred HHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 54310467899857122538899999999869838885
Q gi|254780872|r 183 AEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDR 220 (254)
Q Consensus 183 ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~ 220 (254)
+. +|= -.-.|=..+.-.++|++-||+-+.+
T Consensus 275 ~G-----M~F---SVL~FK~~A~Y~~~L~~~Gy~DVTl 304 (306)
T TIGR02716 275 IG-----MGF---SVLEFKDQAVYKDLLRSLGYKDVTL 304 (306)
T ss_pred CC-----CCC---HHHHHHHCCCCHHHHHHCCCCEEEC
T ss_conf 16-----661---0121100230079998559720101
No 209
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.08 E-value=0.00038 Score=46.36 Aligned_cols=127 Identities=23% Similarity=0.422 Sum_probs=73.1
Q ss_pred CCHHHHHHHHH------HHHHHCC-CCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHH-HHH-
Q ss_conf 98899999999------9887468-88871267751756599999998865187644458800162888569856-999-
Q gi|254780872|r 11 KNQDAINQFSN------IASEWWE-PTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGG-LLS- 81 (254)
Q Consensus 11 ~~~~ei~~F~~------~a~~WwD-~~g~~~~Lh~~N~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G-~~s- 81 (254)
.|+..|+-+++ ++-++|| |.|-..| +-|-|.+||.- +...+ .+.....+-++.++||||.|.- ++-
T Consensus 21 anp~AVk~LnKAlL~~fY~v~~wdiPeg~LCP---pvPgRAdYih~-laDLL-~s~~g~~~~~~i~~LDIGvGAnCIYPl 95 (292)
T COG3129 21 ANPLAVKALNKALLAHFYAVRYWDIPEGFLCP---PVPGRADYIHH-LADLL-ASTSGQIPGKNIRILDIGVGANCIYPL 95 (292)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEECCCCCCCCC---CCCCHHHHHHH-HHHHH-HHCCCCCCCCCEEEEEECCCCCCCCCC
T ss_conf 88899999889999874360475178877389---99973679999-99998-743898776764788504576420021
Q ss_pred HHHHHCCCCEEEECCHHHHHHHHHHHHHCC-CC--CCCCC-CCCCCC----CCCCCCCHHHHEECCCHH
Q ss_conf 999731981699521356778888653101-12--11112-210012----321115301300124310
Q gi|254780872|r 82 EPMAQMGATVTGIDPSTKNIAIAKNHANMK-NI--NIDYR-VSCAEE----IAETDEKFDIILNMEVIE 142 (254)
Q Consensus 82 ~~la~~g~~V~giD~S~~~i~~Ak~~a~~~-~~--~i~~~-~~~~~~----l~~~~~~FD~V~~~~vle 142 (254)
.-....|++-+|.|+++..++.|+.....+ ++ .|+.+ +.+... +.-.++.||++.|.--+|
T Consensus 96 iG~~eYgwrfvGseid~~sl~sAk~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 96 IGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred CCCEEECCEEECCCCCHHHHHHHHHHHHCCCCHHHHEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 332121220015746877888889998709041533367752685434165103443330575189830
No 210
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.07 E-value=0.0041 Score=39.97 Aligned_cols=96 Identities=20% Similarity=0.352 Sum_probs=54.4
Q ss_pred CCEEEECCC-HHH-HHHHHHHCCCCEEEECCHHHHHHHHHH---HHHCCCCC--CC-------CC-CCCCCCCCCCCCCH
Q ss_conf 628885698-569-999997319816995213567788886---53101121--11-------12-21001232111530
Q gi|254780872|r 68 LRILDLGCG-GGL-LSEPMAQMGATVTGIDPSTKNIAIAKN---HANMKNIN--ID-------YR-VSCAEEIAETDEKF 132 (254)
Q Consensus 68 ~~VLDiGCG-~G~-~s~~la~~g~~V~giD~S~~~i~~Ak~---~a~~~~~~--i~-------~~-~~~~~~l~~~~~~F 132 (254)
.+|-=+|-| -|+ ++..+|+.|++|+|+|+.+..++.-+. +..+..+. +. ++ ..+.+++ ..-
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l----~~~ 85 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL----KEC 85 (436)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCEEECCHHHC----CCC
T ss_conf 2899982464457889999876995575757889988875786425468688999999863971575685562----548
Q ss_pred HH-HEECCC-H--HCCCCH---HHHHHHHHHHCCCCCEEEEE
Q ss_conf 13-001243-1--026888---89988887521333215774
Q gi|254780872|r 133 DI-ILNMEV-I--EHVDNI---PYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 133 D~-V~~~~v-l--eHv~d~---~~~l~~~~~~LkpgG~liis 167 (254)
|+ |+|.-. + +|-+|. ....+.+++.|++|-.+++.
T Consensus 86 dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlE 127 (436)
T COG0677 86 DVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILE 127 (436)
T ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 889999357767899988489999999999756778889996
No 211
>KOG3201 consensus
Probab=97.06 E-value=0.00031 Score=46.95 Aligned_cols=106 Identities=23% Similarity=0.327 Sum_probs=64.2
Q ss_pred HHHCCEEEECCC-HHHHHHHHHHC--CCCEEEECCHHHHHHHHHH-HHHC--CCC-C---CCCCCCCCCCCCCCCCCHHH
Q ss_conf 001628885698-56999999731--9816995213567788886-5310--112-1---11122100123211153013
Q gi|254780872|r 65 FKGLRILDLGCG-GGLLSEPMAQM--GATVTGIDPSTKNIAIAKN-HANM--KNI-N---IDYRVSCAEEIAETDEKFDI 134 (254)
Q Consensus 65 l~g~~VLDiGCG-~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~-~a~~--~~~-~---i~~~~~~~~~l~~~~~~FD~ 134 (254)
+.|++|||+|.| +|+-...+|.. ...|.-.|-.+..++-.+. +... .+. . +++..-.. .......+||+
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a-qsq~eq~tFDi 106 (201)
T KOG3201 28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA-QSQQEQHTFDI 106 (201)
T ss_pred HHHHHHHHHCCCHHHHHHHHEEEECCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHH-HHHHHHCCCCE
T ss_conf 76788987267446554552045358735887169789999799998512002565000347877644-88875170227
Q ss_pred HEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 0012431026888899888875213332157743676
Q gi|254780872|r 135 ILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINR 171 (254)
Q Consensus 135 V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist~Nr 171 (254)
|+|.+-+---..-+...+.+.++|+|.|.-++..|-|
T Consensus 107 IlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201 107 ILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 9860102588999999999999858466616766755
No 212
>PRK09422 alcohol dehydrogenase; Provisional
Probab=97.04 E-value=0.003 Score=40.80 Aligned_cols=93 Identities=20% Similarity=0.253 Sum_probs=57.2
Q ss_pred HHCCEEEECCC-HHHHHHHHHH-C-CCCEEEECCHHHHHHHHHHHHHCCCCCCCCC-CCCCCCC-CCCCCCHH-HHEECC
Q ss_conf 01628885698-5699999973-1-9816995213567788886531011211112-2100123-21115301-300124
Q gi|254780872|r 66 KGLRILDLGCG-GGLLSEPMAQ-M-GATVTGIDPSTKNIAIAKNHANMKNINIDYR-VSCAEEI-AETDEKFD-IILNME 139 (254)
Q Consensus 66 ~g~~VLDiGCG-~G~~s~~la~-~-g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~-~~~~~~l-~~~~~~FD-~V~~~~ 139 (254)
.|.+||=+|+| .|.++..+++ . |++|+++|.|++-++.|+..... .-+++. ..+..+. ....+.+| +|.+.
T Consensus 162 ~G~~VlV~GaGgvG~~aiq~ak~~~g~~Vi~~~~~~~k~~~a~~lGad--~vi~~~~~~~~~~~~~~~~gg~~~~v~~~- 238 (338)
T PRK09422 162 PGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGAD--LTINSKRVEDVAKIIQEKTGGAHAAVVTA- 238 (338)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCC--EEECCCCCCCHHHHHHHHCCCCCEEEEEC-
T ss_conf 998899968868999999999980898699998999999999972998--99818874349999999509977699967-
Q ss_pred CHHCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 3102688889988887521333215774
Q gi|254780872|r 140 VIEHVDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 140 vleHv~d~~~~l~~~~~~LkpgG~liis 167 (254)
+ . ...+....+.|++||.+++-
T Consensus 239 ----~-~-~~~~~~~~~~l~~gG~~v~v 260 (338)
T PRK09422 239 ----V-A-KAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred ----C-C-HHHHHHHHHHHHCCCEEEEE
T ss_conf ----8-7-89999999981169999998
No 213
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=97.00 E-value=0.0025 Score=41.30 Aligned_cols=96 Identities=19% Similarity=0.271 Sum_probs=61.9
Q ss_pred CHHHCCEEEECCC-HHHHHHHHHHC-CC-CEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC---CCCCHHHHEE
Q ss_conf 8001628885698-56999999731-98-16995213567788886531011211112210012321---1153013001
Q gi|254780872|r 64 PFKGLRILDLGCG-GGLLSEPMAQM-GA-TVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAE---TDEKFDIILN 137 (254)
Q Consensus 64 ~l~g~~VLDiGCG-~G~~s~~la~~-g~-~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~---~~~~FD~V~~ 137 (254)
++.|.+||=+|+| .|+++..+++. |+ +|.++|.++.-++.|++.... .-+++...+..+... ...-+|+|+
T Consensus 161 ~~~g~~VlV~GaG~vGl~~~~~ak~~Ga~~Vi~~d~~~~kl~~a~~lGa~--~~i~~~~~~~~~~~~~~t~~~G~Dvvi- 237 (341)
T PRK05396 161 DLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGAT--RAVNVAKEDLRDVMAELGMTEGFDVGL- 237 (341)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCC--EEEECCCHHHHHHHHHHHCCCCCEEEE-
T ss_conf 77888699989975432999999984992899994899999989864994--999688506899999974899976999-
Q ss_pred CCCHHCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 243102688889988887521333215774
Q gi|254780872|r 138 MEVIEHVDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 138 ~~vleHv~d~~~~l~~~~~~LkpgG~liis 167 (254)
+.+.. ...++...++|++||.+++-
T Consensus 238 ----d~~G~-~~~~~~~~~~l~~gG~vv~~ 262 (341)
T PRK05396 238 ----EMSGA-PSAFRQMLDAMNHGGRIAML 262 (341)
T ss_pred ----ECCCC-HHHHHHHHHHHHCCCEEEEE
T ss_conf ----87898-99999999986359899999
No 214
>PRK10083 putative dehydrogenase; Provisional
Probab=97.00 E-value=0.0037 Score=40.21 Aligned_cols=97 Identities=19% Similarity=0.180 Sum_probs=58.7
Q ss_pred CCHHHCCEEEECCCH-HHHHHHHHH-C-CC-CEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCHHHHEE
Q ss_conf 880016288856985-699999973-1-98-1699521356778888653101121111221001232-11153013001
Q gi|254780872|r 63 HPFKGLRILDLGCGG-GLLSEPMAQ-M-GA-TVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA-ETDEKFDIILN 137 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~-G~~s~~la~-~-g~-~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~-~~~~~FD~V~~ 137 (254)
.+..|.+||=+|||+ |+++..+++ . |+ .|+++|.++.-++.|++..... -++....++.+.. .....+|+|
T Consensus 157 ~~~~g~~VlV~G~G~iGl~~~~~~~~~~ga~~Vi~~d~~~~rl~~A~~~GAd~--vi~~~~~~~~~~~~~~G~~~dvv-- 232 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVLKGVYGVKNVIVADRIDERLALAKESGADW--VINNAQESLAEALAEKGVKPTLI-- 232 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCE--EECCCCCCHHHHHHHCCCCCCEE--
T ss_conf 89999889995876599999999998569978999379899999999719989--98488766999998539996199--
Q ss_pred CCCHHCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 243102688889988887521333215774
Q gi|254780872|r 138 MEVIEHVDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 138 ~~vleHv~d~~~~l~~~~~~LkpgG~liis 167 (254)
++-+..+ ..++...++++|||.+++-
T Consensus 233 ---id~~g~~-~~~~~a~~~~~~gG~iv~~ 258 (339)
T PRK10083 233 ---FDAACHP-SILEEAVTLASPAARIVLM 258 (339)
T ss_pred ---EECCCCH-HHHHHHHHHHHCCEEEEEE
T ss_conf ---9666688-9999999985188099999
No 215
>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=96.98 E-value=0.0024 Score=41.44 Aligned_cols=102 Identities=23% Similarity=0.299 Sum_probs=72.4
Q ss_pred CCHHHCCEEEECCCHHHHHHHHH--HCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCC-CCCCHHHHEEC
Q ss_conf 88001628885698569999997--319816995213567788886531011211112210012-321-11530130012
Q gi|254780872|r 63 HPFKGLRILDLGCGGGLLSEPMA--QMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE-IAE-TDEKFDIILNM 138 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~~s~~la--~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~-l~~-~~~~FD~V~~~ 138 (254)
..|.|++||=+|=. -+.|.+++ ..+.+|+-+|+.+.+|+.-+..|++.+++|+....+..+ +|. -.++||+++.-
T Consensus 41 gdL~Gk~iL~vGDD-DLtSlA~al~~~p~~I~VvDIDeRll~fI~~~A~~~gl~i~~~~~DlR~pLP~~l~~~FD~f~TD 119 (243)
T pfam01861 41 GDLEGKEILVLGDD-DLTSLAAALTGLPKRIAVVDIDERLIKFIERVAKEEGLKIEAFVHDLRNPLPEDLKHKFDVFITD 119 (243)
T ss_pred CCCCCCEEEEECCC-CHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCEEECC
T ss_conf 88579879997286-18789999648985489996758999999999997499716887410148999996167989718
Q ss_pred CCHHCCCCHHHHHHHHHHHCCCCCEE-EE
Q ss_conf 43102688889988887521333215-77
Q gi|254780872|r 139 EVIEHVDNIPYFIKTCCSLLLSNGLM-FI 166 (254)
Q Consensus 139 ~vleHv~d~~~~l~~~~~~LkpgG~l-ii 166 (254)
--+-+.-...|+......||..|.. ++
T Consensus 120 -PPyT~~G~~LFlsRgi~~Lk~eg~agYf 147 (243)
T pfam01861 120 -PPETVDGLKAFLGRGIATLKGEGCAGYF 147 (243)
T ss_pred -CCCCHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf -9987789999999999982668852268
No 216
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.98 E-value=0.014 Score=36.72 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=53.1
Q ss_pred CCEEEECCC-HHH-HHHHHHHCCCCEEEECCHHHHHHHHHHH---HHCCCCCCCCC----CCCC---CCCCCCCCCHHHH
Q ss_conf 628885698-569-9999973198169952135677888865---31011211112----2100---1232111530130
Q gi|254780872|r 68 LRILDLGCG-GGL-LSEPMAQMGATVTGIDPSTKNIAIAKNH---ANMKNINIDYR----VSCA---EEIAETDEKFDII 135 (254)
Q Consensus 68 ~~VLDiGCG-~G~-~s~~la~~g~~V~giD~S~~~i~~Ak~~---a~~~~~~i~~~----~~~~---~~l~~~~~~FD~V 135 (254)
++|-=||.| -|+ ++..+|..|++|+|+|++++-++.-++. ..+.+++=-+. .+.. .++...-..-|+|
T Consensus 1 MkI~ViGlGyVGl~~a~~lA~~G~~V~g~D~d~~~i~~l~~g~~p~~E~gl~~ll~~~~~~~~l~~ttd~~~~i~~~dii 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEECCHHHHHHHCCEE
T ss_conf 97999897877999999999489948999899999999977989978989899999998639979987889987209999
Q ss_pred -EECCCH---HCCCC---HHHHHHHHHHHCCCCCEEEE-EC
Q ss_conf -012431---02688---88998888752133321577-43
Q gi|254780872|r 136 -LNMEVI---EHVDN---IPYFIKTCCSLLLSNGLMFI-ST 168 (254)
Q Consensus 136 -~~~~vl---eHv~d---~~~~l~~~~~~LkpgG~lii-st 168 (254)
+|...= ..-+| ...+++++.+.|+++..+++ ||
T Consensus 81 ~I~V~TP~~~~g~~d~s~l~~a~~~i~~~l~~~~lvii~ST 121 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLEST 121 (411)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 99768986668872138999999999976689998999578
No 217
>pfam07091 FmrO Ribosomal RNA methyltransferase (FmrO). This family consists of several bacterial ribosomal RNA methyltransferase (aminoglycoside-resistance methyltransferase) proteins.
Probab=96.96 E-value=0.0017 Score=42.34 Aligned_cols=154 Identities=17% Similarity=0.135 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHH-HC-CCCEEEECCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 565999999988651876444588001628885698569999997-31-9816995213567788886531011211112
Q gi|254780872|r 41 PVRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMA-QM-GATVTGIDPSTKNIAIAKNHANMKNINIDYR 118 (254)
Q Consensus 41 ~~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la-~~-g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~ 118 (254)
..|++++.+-....|.... .-.+|||+|||--=++.+.. .. ++...|.|++..++++.+......++..++.
T Consensus 83 rERL~~ld~fY~~if~~~~------~p~sVlDlaCGlNPLa~pwm~~~~~~~Y~a~DId~~~i~fi~~~l~~l~v~~~~~ 156 (248)
T pfam07091 83 RERLPILDEFYAEIFGALP------PPRSVLDLACGLNPLAVPWMPLAPDATYHAYDIDRALIEFIRAFLALLGVPGEVR 156 (248)
T ss_pred HHHHHHHHHHHHHHHHCCC------CCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 4210358999999983489------9864420002688301423368998679997077789999999998629876379
Q ss_pred CCCCCCCCCCCCCHHHHEECCCHHCCCCHHH--HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 2100123211153013001243102688889--98888752133321577436766024564156554310467899857
Q gi|254780872|r 119 VSCAEEIAETDEKFDIILNMEVIEHVDNIPY--FIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQ 196 (254)
Q Consensus 119 ~~~~~~l~~~~~~FD~V~~~~vleHv~d~~~--~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~ 196 (254)
+.|...-+ .....|+.+.+-+++-++.... .+.-+ +.++- -.+++|.|-|++-.+- -++.+ |
T Consensus 157 ~~Dl~~~~-p~~~~DvaLllK~lp~LE~q~~G~g~~ll-~~l~~-~~vVVSFPtrsLgGR~---------kGm~~--~-- 220 (248)
T pfam07091 157 VRDLLTDP-PAEPADVALLLKTLPLLEQQRRGAGLDLL-DALNA-PHVVVSFPTRSLGGRS---------KGMEA--T-- 220 (248)
T ss_pred EEEECCCC-CCCCCCCHHHHHHHHHHHHHCCCCHHHHH-HHHCC-CEEEEECCCCCCCCCC---------CCCCC--C--
T ss_conf 87610479-98873400475527789887026078999-98379-8389965641226766---------64446--6--
Q ss_pred HHHCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 1225388999999998698388855
Q gi|254780872|r 197 YDKFIKPTEMECFLAANKVKIIDRV 221 (254)
Q Consensus 197 ~~~Fi~p~el~~~l~~~g~~~~~~~ 221 (254)
| ...+..++...|+.+..+.
T Consensus 221 y-----~~~fe~~~~~r~~~~~~~~ 240 (248)
T pfam07091 221 Y-----SAWFEALVAGRGWIVDRLE 240 (248)
T ss_pred H-----HHHHHHHCCCCCCEEEEEE
T ss_conf 8-----8999976036874345666
No 218
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.92 E-value=0.0038 Score=40.20 Aligned_cols=94 Identities=21% Similarity=0.329 Sum_probs=60.4
Q ss_pred CCEEEECCC-HHHHHHHHHHC-C-CCEEEECCHHHHHHHHHHHHHCCC-CCCCCCCCCCCCC-CCC-CCCHHHHE-ECCC
Q ss_conf 628885698-56999999731-9-816995213567788886531011-2111122100123-211-15301300-1243
Q gi|254780872|r 68 LRILDLGCG-GGLLSEPMAQM-G-ATVTGIDPSTKNIAIAKNHANMKN-INIDYRVSCAEEI-AET-DEKFDIIL-NMEV 140 (254)
Q Consensus 68 ~~VLDiGCG-~G~~s~~la~~-g-~~V~giD~S~~~i~~Ak~~a~~~~-~~i~~~~~~~~~l-~~~-~~~FD~V~-~~~v 140 (254)
.+|+=+||| -|+++..+++. | ..|+.+|.++.-++.|++...... .+..- ....+.. ... ...+|+|+ |.+
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~-~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSE-DDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEECCCC-HHHHHHHHHHCCCCCCCEEEECCC-
T ss_conf 989998888999999999987698279997999899999998779718724630-147889998608987999999989-
Q ss_pred HHCCCCHHHHHHHHHHHCCCCCEEEE-ECC
Q ss_conf 10268888998888752133321577-436
Q gi|254780872|r 141 IEHVDNIPYFIKTCCSLLLSNGLMFI-STI 169 (254)
Q Consensus 141 leHv~d~~~~l~~~~~~LkpgG~lii-st~ 169 (254)
-..++..+.++++|||.+++ .+.
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred ------CHHHHHHHHHHCCCCCEEEEEECC
T ss_conf ------979999999960259899999515
No 219
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.0043 Score=39.86 Aligned_cols=111 Identities=18% Similarity=0.249 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHC-CC--CEEEECCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 6599999998865187644458800162888569856999999731-98--16995213567788886531011211112
Q gi|254780872|r 42 VRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQM-GA--TVTGIDPSTKNIAIAKNHANMKNINIDYR 118 (254)
Q Consensus 42 ~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~-g~--~V~giD~S~~~i~~Ak~~a~~~~~~i~~~ 118 (254)
.|..|=...+.+.+..- -+|..|+|+||-.|-.|..+++. |. .|+|||+.+--. .. ++.+.
T Consensus 27 SRAa~KL~el~~k~~i~------~~~~~ViDLGAAPGgWsQva~~~~~~~~~vvavDi~p~~~--------~~--~V~~i 90 (205)
T COG0293 27 SRAAYKLLELNEKFKLF------KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP--------IP--GVIFL 90 (205)
T ss_pred CHHHHHHHHHHHHCCCC------CCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCC--------CC--CCEEE
T ss_conf 05888999998743730------5898799838799849999999738888489997754556--------78--94688
Q ss_pred CCCCCC------CCC--CCCCHHHHEECCC-----HHCCCCH------HHHHHHHHHHCCCCCEEEEEC
Q ss_conf 210012------321--1153013001243-----1026888------899888875213332157743
Q gi|254780872|r 119 VSCAEE------IAE--TDEKFDIILNMEV-----IEHVDNI------PYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 119 ~~~~~~------l~~--~~~~FD~V~~~~v-----leHv~d~------~~~l~~~~~~LkpgG~liist 168 (254)
++++.+ +.. ....+|+|+|-.. ++-++++ ..++.-+..+|+|||.+++.+
T Consensus 91 q~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 91 QGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred EEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEE
T ss_conf 413248437999998707787666872588776787220088999999999999987257898399999
No 220
>KOG1501 consensus
Probab=96.88 E-value=0.0031 Score=40.69 Aligned_cols=99 Identities=21% Similarity=0.264 Sum_probs=57.1
Q ss_pred CCEEEECCCHHHHHHHHHHCCC-CEEEECCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCC-CCCHHHHEECCCH-H
Q ss_conf 6288856985699999973198-169952135677888865310112--111122100123211-1530130012431-0
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIAKNHANMKNI--NIDYRVSCAEEIAET-DEKFDIILNMEVI-E 142 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~g~-~V~giD~S~~~i~~Ak~~a~~~~~--~i~~~~~~~~~l~~~-~~~FD~V~~~~vl-e 142 (254)
.-|||||.|||++|...++.|+ .|++++.=..|.+.|+.--.+++. +|+.+.....++... ...-|+++.-.+. |
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtE 147 (636)
T KOG1501 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTE 147 (636)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEEEHHHCHHHHHHHHHHHCCCCCCCEEEECCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 89997268810899998873577077521222189999998841887652266203663155557624443457665455
Q ss_pred CCCC-HHHHHHHHH-HHCCCCCEEEE
Q ss_conf 2688-889988887-52133321577
Q gi|254780872|r 143 HVDN-IPYFIKTCC-SLLLSNGLMFI 166 (254)
Q Consensus 143 Hv~d-~~~~l~~~~-~~LkpgG~lii 166 (254)
-+.. ....++++. ++++||-..+=
T Consensus 148 ligeGalps~qhAh~~L~~~nc~~VP 173 (636)
T KOG1501 148 LIGEGALPSLQHAHDMLLVDNCKTVP 173 (636)
T ss_pred HHCCCCCHHHHHHHHHHCCCCCEECC
T ss_conf 52234304389999986236872146
No 221
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.87 E-value=0.0048 Score=39.54 Aligned_cols=85 Identities=16% Similarity=0.199 Sum_probs=59.4
Q ss_pred CCEEEECCC--HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCC
Q ss_conf 628885698--569999997319816995213567788886531011211112210012321115301300124310268
Q gi|254780872|r 68 LRILDLGCG--GGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVD 145 (254)
Q Consensus 68 ~~VLDiGCG--~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~ 145 (254)
++|+=||+| +|-++..+++.|.+|+|+|.++..++.|.. .+. ++....+.+. -...|+|+..-- +.
T Consensus 2 mkI~IiGlGLIGgSla~al~~~~~~V~g~d~~~~~~~~A~~----~g~-id~~~~~~~~----~~~aDliila~P---v~ 69 (280)
T PRK07417 2 MNIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE----RGL-VDEASTDLSL----LKDCDLVILALP---IG 69 (280)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CCC-CCEECCCHHH----HCCCCEEEECCC---HH
T ss_conf 78999931857999999999689979999799999999998----699-7520278746----057998998797---47
Q ss_pred CHHHHHHHHHHHCCCCCEE
Q ss_conf 8889988887521333215
Q gi|254780872|r 146 NIPYFIKTCCSLLLSNGLM 164 (254)
Q Consensus 146 d~~~~l~~~~~~LkpgG~l 164 (254)
....+++++...++|+..+
T Consensus 70 ~~~~~~~~~~~~l~~~~ii 88 (280)
T PRK07417 70 LLLPPSEELIPALPPEAIV 88 (280)
T ss_pred HHHHHHHHHHHHCCCCCEE
T ss_conf 7899999998647898489
No 222
>PRK07201 short chain dehydrogenase; Provisional
Probab=96.82 E-value=0.0028 Score=41.00 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=55.6
Q ss_pred CCCCCCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---------
Q ss_conf 444588001628885698569---99999731981699521356778888653101121111221001232---------
Q gi|254780872|r 59 SDDTHPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA--------- 126 (254)
Q Consensus 59 ~~~~~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~--------- 126 (254)
.....||+|+.+|=-|.+.|+ .+..||+.|++|..++-+.+.++..+...+..+.++.....|+.+..
T Consensus 368 ~~~~g~L~GKvalITGASSGIG~A~A~~LA~~GA~Vvl~AR~~e~Le~v~~ei~~~Gg~a~~~~~DVtd~~~v~~lv~~i 447 (663)
T PRK07201 368 RDLRGPLEGKHVIITGASSGIGRATAIKVAEAGATVFALARDGEKLDELVAEIRARGGQAHAYTCDLTDSASVEHTVKDI 447 (663)
T ss_pred CCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 77688879947999388759999999999987998999989999999999999955991899996279999999999999
Q ss_pred -CCCCCHHHHEEC
Q ss_conf -111530130012
Q gi|254780872|r 127 -ETDEKFDIILNM 138 (254)
Q Consensus 127 -~~~~~FD~V~~~ 138 (254)
..-+..|++++.
T Consensus 448 ~~~~G~IDVLVNN 460 (663)
T PRK07201 448 LGRHGHVDYLVNN 460 (663)
T ss_pred HHHCCCCCEEEEC
T ss_conf 9967998889989
No 223
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=96.75 E-value=0.0058 Score=39.01 Aligned_cols=140 Identities=20% Similarity=0.302 Sum_probs=84.1
Q ss_pred CCHHHCCEEEECCC-HHHHHHHHHHC-CC-CEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCC----CCCCCCCCHHHH
Q ss_conf 88001628885698-56999999731-98-1699521356778888653101121111221001----232111530130
Q gi|254780872|r 63 HPFKGLRILDLGCG-GGLLSEPMAQM-GA-TVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAE----EIAETDEKFDII 135 (254)
Q Consensus 63 ~~l~g~~VLDiGCG-~G~~s~~la~~-g~-~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~----~l~~~~~~FD~V 135 (254)
.++.|.++|=+||| -|+++.+.|+. || +|+.+|.|+--++.||+-....-+|+ ...+.. ++. ..+-||++
T Consensus 158 ~~~~G~~vlv~GaGPiGlma~AVAKa~GA~~Vi~~d~neyRleLAkk~Gat~~vn~--~kEd~~k~v~~lt-~geG~Dv~ 234 (341)
T TIGR00692 158 SDLAGEDVLVIGAGPIGLMAVAVAKAAGARNVIVIDKNEYRLELAKKMGATRVVNV--AKEDLVKVVAELT-SGEGVDVV 234 (341)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEEC--CCCCHHHHHHHHC-CCCCEEEE
T ss_conf 77688718998577478999999877278405996586479999987098658701--0147689888403-88964799
Q ss_pred EECCCHHCCCCHHHHHHHHHHHCCCCCEEEEE-------CCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHH
Q ss_conf 01243102688889988887521333215774-------36766024564156554310467899857122538899999
Q gi|254780872|r 136 LNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIS-------TINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMEC 208 (254)
Q Consensus 136 ~~~~vleHv~d~~~~l~~~~~~LkpgG~liis-------t~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~ 208 (254)
+=+ --. +++|+.......+||++-+- |++-|- ..||-+=.|-|+ .|-|-|+. =.++.+
T Consensus 235 lEm-----SGa-P~A~~~gL~~~~~gGR~~~Lglpp~~vtID~tN----kviFKgLtI~GI--tGR~mfeT---Wy~vs~ 299 (341)
T TIGR00692 235 LEM-----SGA-PKALEQGLDAVANGGRVALLGLPPSDVTIDLTN----KVIFKGLTIKGI--TGRKMFET---WYKVSR 299 (341)
T ss_pred EEC-----CCC-CHHHHHHHHHHCCCCEEEECCCCCCCEEEEECC----CEEEEEEEEEEE--CCCCHHHH---HHHHHH
T ss_conf 864-----899-179999999850688089813689761263037----478864277200--07504678---999999
Q ss_pred HHHHCCCEEEEE
Q ss_conf 999869838885
Q gi|254780872|r 209 FLAANKVKIIDR 220 (254)
Q Consensus 209 ~l~~~g~~~~~~ 220 (254)
+++.+++.+--+
T Consensus 300 LiqS~~ldL~Pi 311 (341)
T TIGR00692 300 LIQSNKLDLSPI 311 (341)
T ss_pred HHCCCCCCCCCE
T ss_conf 842688356845
No 224
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=96.72 E-value=0.0063 Score=38.81 Aligned_cols=92 Identities=21% Similarity=0.225 Sum_probs=57.3
Q ss_pred CHHHCCEEEECC-C-HHHHHHHHHH-CCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCC
Q ss_conf 800162888569-8-5699999973-198169952135677888865310112111122100123211153013001243
Q gi|254780872|r 64 PFKGLRILDLGC-G-GGLLSEPMAQ-MGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEV 140 (254)
Q Consensus 64 ~l~g~~VLDiGC-G-~G~~s~~la~-~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~v 140 (254)
..+|.+||=.|| | .|.++..+++ +|++|+++|.|+.-.+.++..+.. -++.. ...++.. ....+|+|+-
T Consensus 160 ~~~g~~VlI~Ga~G~vG~~aiqlak~~Ga~vi~v~~~~~k~~~~~~~~~~---~i~~~-~~~~~~~-~~~g~Dvvid--- 231 (332)
T PRK13771 160 VSEGETVLVTGAGGGVGIHAVQVAKAYGAKVIAVTTSESKAKAVGKYADY---VIVGS-KFSEEVK-KLGGADIVIE--- 231 (332)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCE---EEECC-CHHHHHH-HCCCCCEEEE---
T ss_conf 99999999977877589999999998699899994999999999856998---98363-0578887-3468638984---
Q ss_pred HHCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 102688889988887521333215774
Q gi|254780872|r 141 IEHVDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 141 leHv~d~~~~l~~~~~~LkpgG~liis 167 (254)
.+..+ .+....+.|+|||.+++-
T Consensus 232 --~~G~~--~~~~~~~~l~~~G~iv~~ 254 (332)
T PRK13771 232 --TVGGP--TLEESLRSLNWGGKIVLI 254 (332)
T ss_pred --CCCHH--HHHHHHHHHCCCCEEEEE
T ss_conf --57668--899888862589699999
No 225
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869 This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing.
Probab=96.71 E-value=0.00026 Score=47.36 Aligned_cols=103 Identities=24% Similarity=0.330 Sum_probs=70.7
Q ss_pred HHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCC---CCCH------HHH
Q ss_conf 016288856985699999973198169952135677888865310112-111122100123211---1530------130
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAET---DEKF------DII 135 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~~---~~~F------D~V 135 (254)
+|...||+=||.|=||.+||+.-.+|.|.++|+..++.|..+...+++ ||.....++|++... ...| |+=
T Consensus 203 ~g~DLLELYCGNGNFsLaLA~~f~rVLATEiaK~SV~aAq~Ni~~N~idNv~i~RlSAEEft~A~~~~R~F~RL~d~gId 282 (361)
T TIGR02143 203 KGMDLLELYCGNGNFSLALAQNFERVLATEIAKPSVNAAQYNIAANKIDNVQIIRLSAEEFTEAMNGVREFRRLKDGGID 282 (361)
T ss_pred CCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 88720100026753104456533345543024024799999987179883101023279999986037765465668863
Q ss_pred EECCCHHCC-CCHH-HHH-HHHHHHCCCCC-EEEEEC
Q ss_conf 012431026-8888-998-88875213332-157743
Q gi|254780872|r 136 LNMEVIEHV-DNIP-YFI-KTCCSLLLSNG-LMFIST 168 (254)
Q Consensus 136 ~~~~vleHv-~d~~-~~l-~~~~~~LkpgG-~liist 168 (254)
.-..-.+|| -||+ +-| .+..++.+.=+ +|+||.
T Consensus 283 L~~Y~f~tiFVDPPRaGlD~~t~~Lv~~y~rIlYISC 319 (361)
T TIGR02143 283 LKSYNFNTIFVDPPRAGLDPDTVKLVQKYERILYISC 319 (361)
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEEC
T ss_conf 3420256026779888889899999962598799846
No 226
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.65 E-value=0.022 Score=35.39 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=55.1
Q ss_pred CCEEEECCC-HH-HHHHHHHHCCCCEEEECCHHHHHHHHHHH---HHCCCCCCCC----CCCCCCCCCCCCCCHHHH-EE
Q ss_conf 628885698-56-99999973198169952135677888865---3101121111----221001232111530130-01
Q gi|254780872|r 68 LRILDLGCG-GG-LLSEPMAQMGATVTGIDPSTKNIAIAKNH---ANMKNINIDY----RVSCAEEIAETDEKFDII-LN 137 (254)
Q Consensus 68 ~~VLDiGCG-~G-~~s~~la~~g~~V~giD~S~~~i~~Ak~~---a~~~~~~i~~----~~~~~~~l~~~~~~FD~V-~~ 137 (254)
++|-=||+| -| -++..+|..|++|+|+|++++-++.-++. ..+.++.--. ..+..... ...+.-|++ +|
T Consensus 4 kkI~ViGlGYVGL~~a~~lA~~G~~Vig~D~d~~kv~~l~~g~~p~~Ep~l~~ll~~~~~~~~l~~t-~~~~~ad~iiI~ 82 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKAAVEGGYLRAT-TTPVPADAFLIA 82 (415)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEE-CCHHHCCEEEEE
T ss_conf 8799988687789999999968894899989999999997868998898989999999865983652-574678999998
Q ss_pred CCCH--HC-CCC---HHHHHHHHHHHCCCCCEEEE-EC
Q ss_conf 2431--02-688---88998888752133321577-43
Q gi|254780872|r 138 MEVI--EH-VDN---IPYFIKTCCSLLLSNGLMFI-ST 168 (254)
Q Consensus 138 ~~vl--eH-v~d---~~~~l~~~~~~LkpgG~lii-st 168 (254)
...= +. -+| ...+++++.+.|++|-.+++ ||
T Consensus 83 V~TP~~~~~~~Dls~i~~a~~~I~~~l~~~~lVIi~ST 120 (415)
T PRK11064 83 VPTPFKGDHEPDLSYVEAAAKSIAPVLKKGDLVILEST 120 (415)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 89997899972020188899999975268867996378
No 227
>PRK11760 putative RNA 2'-O-ribose methyltransferase; Provisional
Probab=96.58 E-value=0.0083 Score=38.06 Aligned_cols=111 Identities=16% Similarity=0.202 Sum_probs=71.3
Q ss_pred HHHHHH-HHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 565999-9999886518764445880016288856985699999973198169952135677888865310112111122
Q gi|254780872|r 41 PVRIKY-IQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRV 119 (254)
Q Consensus 41 ~~R~~~-I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~ 119 (254)
|.|-.. +.|.+...+....-....-.|++.+|+|.-.|-.+..|.++|..|++||..+-.=.. -....|+...
T Consensus 184 PSRStLKLEEA~~~Fip~~e~~~rl~~Gm~aVDLGAaPGGWT~qLv~rg~~V~AVDnG~m~~~L------~~~~~V~H~~ 257 (356)
T PRK11760 184 PSRSTLKLEEAFHVFIPREEWDERLASGMRAVDLGACPGGWTYQLVRRGMFVTAVDNGPMAESL------MDTGQVEHLR 257 (356)
T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCHHH------HCCCCEEEEE
T ss_conf 8468887999999867986765321699758755869970589999779889986587678757------5288757881
Q ss_pred CCCCCCCCCCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 100123211153013001243102688889988887521333
Q gi|254780872|r 120 SCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSN 161 (254)
Q Consensus 120 ~~~~~l~~~~~~FD~V~~~~vleHv~d~~~~l~~~~~~Lkpg 161 (254)
.+...+.-....+|-++|-. |..|..+.+-+.+.|..|
T Consensus 258 ~dgf~f~P~~~~vdwlVCDm----vekP~rva~lm~~Wl~~g 295 (356)
T PRK11760 258 ADGFKFRPTRKNVDWLVCDM----VEKPARVAELMAQWLVNG 295 (356)
T ss_pred CCCEEECCCCCCEEEEEEEC----CCCHHHHHHHHHHHHHCC
T ss_conf 46705636998520899705----368899999999987556
No 228
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.55 E-value=0.0072 Score=38.44 Aligned_cols=85 Identities=19% Similarity=0.214 Sum_probs=57.3
Q ss_pred CCEEEECCC--HHHHHHHHHHCCC--CEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHC
Q ss_conf 628885698--5699999973198--169952135677888865310112111122100123211153013001243102
Q gi|254780872|r 68 LRILDLGCG--GGLLSEPMAQMGA--TVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEH 143 (254)
Q Consensus 68 ~~VLDiGCG--~G~~s~~la~~g~--~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleH 143 (254)
.+|+=||+| +|-++..+.+.|. +|+|+|.+++.++.|+. .+. ++.... ++...-..+|+|+..- .
T Consensus 7 ~~I~IiGlGLIGgSlA~alk~~~~~~~I~g~d~~~~~l~~A~~----~g~-id~~~~---~~~e~~~~~DlIilat---P 75 (307)
T PRK07502 7 DRVALIGLGLIGSSLARAIRRQGLAGEIVGAARSAETRARARE----LGL-GDRVTT---SAAEAVKGADLVILCV---P 75 (307)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH----CCC-CCHHCC---CHHHHHCCCCEEEEEC---C
T ss_conf 6689992787999999999854998579998499999999998----699-751127---7766404589799917---8
Q ss_pred CCCHHHHHHHHHHHCCCCCE
Q ss_conf 68888998888752133321
Q gi|254780872|r 144 VDNIPYFIKTCCSLLLSNGL 163 (254)
Q Consensus 144 v~d~~~~l~~~~~~LkpgG~ 163 (254)
+.....+++++...++|+..
T Consensus 76 v~~~~~vl~~l~~~l~~~~i 95 (307)
T PRK07502 76 VGASGAVAAEIAPHLKPGAI 95 (307)
T ss_pred HHHHHHHHHHHHHHCCCCCE
T ss_conf 99999999999855589968
No 229
>pfam02005 TRM N2,N2-dimethylguanosine tRNA methyltransferase. This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA. The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs. The enzyme is found in both eukaryotes and archaebacteria
Probab=96.45 E-value=0.013 Score=36.81 Aligned_cols=99 Identities=18% Similarity=0.296 Sum_probs=71.6
Q ss_pred HHCCEEEECCCHHHHHHHHHHC--C-CCEEEECCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCC-CCCCHHHHEECC
Q ss_conf 0162888569856999999731--9-81699521356778888653101121--1112210012321-115301300124
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM--G-ATVTGIDPSTKNIAIAKNHANMKNIN--IDYRVSCAEEIAE-TDEKFDIILNME 139 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~--g-~~V~giD~S~~~i~~Ak~~a~~~~~~--i~~~~~~~~~l~~-~~~~FD~V~~~~ 139 (254)
++.+|||.=+|+|+=+..+++- | ..|+.-|+++.+++..+.+++.+++. +...+.++..+.. ..+.||+|=.-
T Consensus 49 ~~~~iLDalsasGiR~iRya~E~~~~~~V~~NDi~~~a~~~i~~N~~lN~~~~~~~~~~~DAn~lm~~~~~~fD~IDlD- 127 (375)
T pfam02005 49 RGIIVLDALSASGIRAIRFALEVPGVEEVFANDISPKAVELIKENVKLNEVENIVVINGDDANMLMRENHRRFDVIDLD- 127 (375)
T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCEEEEC-
T ss_conf 8866975467541999999974699866999559989999999988865998737875475999998558867568678-
Q ss_pred CHHCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 31026888899888875213332157743
Q gi|254780872|r 140 VIEHVDNIPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 140 vleHv~d~~~~l~~~~~~LkpgG~liist 168 (254)
=.--|..+|..+.+.++.||.|.++.
T Consensus 128 ---PfGSp~pfldsAi~av~~~GlL~vTa 153 (375)
T pfam02005 128 ---PFGSPAPFLDSAVQSVKRGGLLCVTA 153 (375)
T ss_pred ---CCCCCCHHHHHHHHHHCCCCEEEEEE
T ss_conf ---99992177999999831598899994
No 230
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.38 E-value=0.027 Score=34.92 Aligned_cols=143 Identities=17% Similarity=0.151 Sum_probs=80.6
Q ss_pred HHCCEEEECCCHHHHHHHHHHC-C--CCEEEECCHHHH----------HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 0162888569856999999731-9--816995213567----------78888653101121111221001232111530
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM-G--ATVTGIDPSTKN----------IAIAKNHANMKNINIDYRVSCAEEIAETDEKF 132 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~-g--~~V~giD~S~~~----------i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~F 132 (254)
.|.+|.|+=-|+|.++..++.. | ..|++.-+.+.. -..+++ +... |.+......-.+. ..+.-
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e-~~~a--N~e~~~~~~~A~~-~pq~~ 123 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE-PVYA--NVEVIGKPLVALG-APQKL 123 (238)
T ss_pred CCCEEEEEECCCCCHHHHHCHHCCCCEEEEEECCHHHCCCCCCHHHHHHHHHHH-HHHH--HHHHHCCCCCCCC-CCCCC
T ss_conf 998799983488507444110028750598856434325101403666666642-2231--0455277500458-99765
Q ss_pred HHHE--------ECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHH
Q ss_conf 1300--------12431026888899888875213332157743676602456415655431046789985712253889
Q gi|254780872|r 133 DIIL--------NMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPT 204 (254)
Q Consensus 133 D~V~--------~~~vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~ 204 (254)
|++. ..--+ |-..-..+..++++.|||||.+.+..- .. . -+.=++.| .-.-+|.|+
T Consensus 124 d~~~~~~~yhdmh~k~i-~~~~A~~vna~vf~~LKPGGv~~V~dH--~a--~----------pG~~~~dt-~~~~ri~~a 187 (238)
T COG4798 124 DLVPTAQNYHDMHNKNI-HPATAAKVNAAVFKALKPGGVYLVEDH--RA--D----------PGSGLSDT-ITLHRIDPA 187 (238)
T ss_pred CCCCCCHHHHHHHCCCC-CCCHHHHHHHHHHHHCCCCCEEEEEEC--CC--C----------CCCCCCHH-HHHCCCCHH
T ss_conf 41332111100110456-852499999999985388847998740--24--6----------89880022-443365758
Q ss_pred HHHHHHHHCCCEEEEEEEEEECCC
Q ss_conf 999999986983888550576677
Q gi|254780872|r 205 EMECFLAANKVKIIDRVGVVYNVF 228 (254)
Q Consensus 205 el~~~l~~~g~~~~~~~g~~~~p~ 228 (254)
.+....+.+||+...-+.+.-||-
T Consensus 188 ~V~a~veaaGFkl~aeS~ilaNp~ 211 (238)
T COG4798 188 VVIAEVEAAGFKLEAESEILANPD 211 (238)
T ss_pred HHHHHHHHHCCEEECEEHHHCCCC
T ss_conf 999999851325511112006888
No 231
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.36 E-value=0.052 Score=33.13 Aligned_cols=97 Identities=18% Similarity=0.260 Sum_probs=58.0
Q ss_pred CCEEEECCCH-H-HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC------CCC-----C---CCCCCCCCCCCCCC
Q ss_conf 6288856985-6-99999973198169952135677888865310112------111-----1---22100123211153
Q gi|254780872|r 68 LRILDLGCGG-G-LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI------NID-----Y---RVSCAEEIAETDEK 131 (254)
Q Consensus 68 ~~VLDiGCG~-G-~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~------~i~-----~---~~~~~~~l~~~~~~ 131 (254)
++|.=||+|+ | -.+..++..|..|+.+|++++.++.|+.+....-- .++ - +.....++.. -..
T Consensus 4 ~~VaViGaGtMG~gIA~~~a~aG~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~g~~~~~~~~~~~~ri~~~~~l~~-l~~ 82 (503)
T PRK08268 4 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAATLAKLVEKGKLTAEQAEAALARLRPVEALAD-LAD 82 (503)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEECCHHH-HCC
T ss_conf 7899979688999999999938990899979989999999999999999997699998899999847474177889-757
Q ss_pred HHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 01300124310268888998888752133321577
Q gi|254780872|r 132 FDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 132 FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~lii 166 (254)
-|+|+- .|.|.++-...+|+++-++++|+-+|.-
T Consensus 83 aDlVIE-AV~E~l~~K~~vf~~l~~~~~~~~IlAS 116 (503)
T PRK08268 83 CDLVVE-AIVERLDVKQALFAQLEAIVSDDCILAT 116 (503)
T ss_pred CCEEEE-CCCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 999999-3606789999999999854798857984
No 232
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.29 E-value=0.081 Score=31.94 Aligned_cols=100 Identities=19% Similarity=0.146 Sum_probs=56.7
Q ss_pred CCEEEECCCH-H-HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCC--CC--CC---CCCCCC----CCCCC-----CC
Q ss_conf 6288856985-6-9999997319816995213567788886531011--21--11---122100----12321-----11
Q gi|254780872|r 68 LRILDLGCGG-G-LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKN--IN--ID---YRVSCA----EEIAE-----TD 129 (254)
Q Consensus 68 ~~VLDiGCG~-G-~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~--~~--i~---~~~~~~----~~l~~-----~~ 129 (254)
++|-=||+|+ | ..+..++..|.+|+-+|++++.++.|+.+..... +. ++ ...... ..+.. .-
T Consensus 4 k~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 83 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYESL 83 (291)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHH
T ss_conf 88999887688999999999589988999899899999999999718999999866899999999998366435888897
Q ss_pred CCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 530130012431026888899888875213332157743
Q gi|254780872|r 130 EKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 130 ~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist 168 (254)
..-|+|+= .|.|-++-...+++++-++++|+-.|.=+|
T Consensus 84 ~~aDlViE-av~E~l~iK~~lf~~l~~~~~~~~IlaSNT 121 (291)
T PRK06035 84 SDADFIVE-AVPEKLDLKRKVFAELERNVSPETIIASNT 121 (291)
T ss_pred CCCCEEEE-CCCCCHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 65999998-883889999999999996589983798608
No 233
>KOG0024 consensus
Probab=96.24 E-value=0.029 Score=34.67 Aligned_cols=98 Identities=21% Similarity=0.284 Sum_probs=63.2
Q ss_pred HHCCEEEECCC-HHHHHHHHHHC-C-CCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCHHHHE
Q ss_conf 01628885698-56999999731-9-81699521356778888653101121111221001232------1115301300
Q gi|254780872|r 66 KGLRILDLGCG-GGLLSEPMAQM-G-ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA------ETDEKFDIIL 136 (254)
Q Consensus 66 ~g~~VLDiGCG-~G~~s~~la~~-g-~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~------~~~~~FD~V~ 136 (254)
.|.+||=+|+| .|+++...|+. | .+|+.+|++++-|+.||+-....-.++.-.. +++++. ..+..||+++
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~-~~~~~~~~v~~~~g~~~~d~~~ 247 (354)
T KOG0024 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKS-SPQELAELVEKALGKKQPDVTF 247 (354)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCEEEECCCCCC-CHHHHHHHHHHHCCCCCCCEEE
T ss_conf 688689976768999999999874987289960677799999982975773044556-5899999998641666798689
Q ss_pred ECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 1243102688889988887521333215774367
Q gi|254780872|r 137 NMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTIN 170 (254)
Q Consensus 137 ~~~vleHv~d~~~~l~~~~~~LkpgG~liist~N 170 (254)
-.--+ +..++..-..+++||.+++.-..
T Consensus 248 dCsG~------~~~~~aai~a~r~gGt~vlvg~g 275 (354)
T KOG0024 248 DCSGA------EVTIRAAIKATRSGGTVVLVGMG 275 (354)
T ss_pred ECCCC------HHHHHHHHHHHCCCCEEEEECCC
T ss_conf 86660------46689899875128789996547
No 234
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.22 E-value=0.014 Score=36.74 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=70.3
Q ss_pred HCCEEEECCCHHHHHHHHHH-CCC-CEEEECCHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCC-CCCHHHHEECCCHH
Q ss_conf 16288856985699999973-198-1699521356778888653101-12111122100123211-15301300124310
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQ-MGA-TVTGIDPSTKNIAIAKNHANMK-NINIDYRVSCAEEIAET-DEKFDIILNMEVIE 142 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~-~g~-~V~giD~S~~~i~~Ak~~a~~~-~~~i~~~~~~~~~l~~~-~~~FD~V~~~~vle 142 (254)
..+|||.=||+|+=...++. .+. .|+.=|+|+++++.++.+.+.+ +.+......|+..+... ...||+|=. +
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi-D--- 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI-D--- 128 (380)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHCCCCCCEEEC-C---
T ss_conf 738864355533667545342576179971589899999999998347666325534289998725887637813-8---
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 2688889988887521333215774
Q gi|254780872|r 143 HVDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 143 Hv~d~~~~l~~~~~~LkpgG~liis 167 (254)
=.--|..|+....+.++.||++.++
T Consensus 129 PFGSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 129 PFGSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred CCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 9999726799999972229889998
No 235
>PRK07660 consensus
Probab=96.21 E-value=0.085 Score=31.79 Aligned_cols=152 Identities=13% Similarity=0.111 Sum_probs=78.1
Q ss_pred CCEEEECCCH-H-HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC------CCCC--CCCCCCCCCC-----CCCCH
Q ss_conf 6288856985-6-99999973198169952135677888865310112------1111--2210012321-----11530
Q gi|254780872|r 68 LRILDLGCGG-G-LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI------NIDY--RVSCAEEIAE-----TDEKF 132 (254)
Q Consensus 68 ~~VLDiGCG~-G-~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~------~i~~--~~~~~~~l~~-----~~~~F 132 (254)
++|.=||+|+ | ..+..++..|.+|+-.|++++.++.++.+....-. .+.- .......+.. .-..-
T Consensus 4 k~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 83 (283)
T PRK07660 4 QKIVVIGAGQMGSGIAQVCAMAGYDVKVQDLKQEQLDRGLAIITKNLARQVEKGRMKEEEKEATLNRLTVTLDLDCVKEA 83 (283)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHCCC
T ss_conf 88999896989999999999669818999798899999999999999999870589989999998358776898997689
Q ss_pred HHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH-HHHHHHHHCCCCCCCCCCHH-------------
Q ss_conf 1300124310268888998888752133321577436766024564-15655431046789985712-------------
Q gi|254780872|r 133 DIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLL-AIIGAEYLLQWLPKGTHQYD------------- 198 (254)
Q Consensus 133 D~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~-~i~~ae~il~~~P~gtH~~~------------- 198 (254)
|+|+= .|.|.++-...+++++-++++|+-.+.=+|-.- +.+.+. ..--.|++++ +|.++
T Consensus 84 DlViE-av~E~l~iK~~lf~~l~~~~~~~~IlaSNTS~l-~i~~ia~~~~~p~R~ig-----~HffnP~~~m~LVEIv~g 156 (283)
T PRK07660 84 DLIIE-AAVEKMDIKKKIFANLDEIAPEHAILATNTSSL-PITEIAAVTKRPEKVIG-----MHFMNPVPVMKLVEIIRG 156 (283)
T ss_pred CEEEE-CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC-CCHHHHHHCCCCHHCCC-----CCCCCCCCCCCEEEECCC
T ss_conf 99998-785754442999999996479971898658888-73255665178243046-----666788565721545699
Q ss_pred HCCCH---HHHHHHHHHCCCEEEEEE---EEEEC
Q ss_conf 25388---999999998698388855---05766
Q gi|254780872|r 199 KFIKP---TEMECFLAANKVKIIDRV---GVVYN 226 (254)
Q Consensus 199 ~Fi~p---~el~~~l~~~g~~~~~~~---g~~~~ 226 (254)
...+| +.+.+++++-|..++-++ |+..|
T Consensus 157 ~~T~~~~~~~~~~~~~~lgk~pV~v~d~pGFi~N 190 (283)
T PRK07660 157 LATDDAVYETIEDITKKIGKVPVEVNDFPGFVSN 190 (283)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHH
T ss_conf 9997999999999998759427998378973279
No 236
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.18 E-value=0.0086 Score=37.96 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=59.0
Q ss_pred CCCCCHHHCCEEEECCCHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCC----CCCCCCCC
Q ss_conf 4458800162888569856999999731---98169952135677888865310112-1111221001----23211153
Q gi|254780872|r 60 DDTHPFKGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAE----EIAETDEK 131 (254)
Q Consensus 60 ~~~~~l~g~~VLDiGCG~G~~s~~la~~---g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~----~l~~~~~~ 131 (254)
.....++-++|||+|.|.|.-+.++... -.+++-++.|+..-++.-.-+..... ...++.+++. .++. ...
T Consensus 107 ~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ 185 (484)
T COG5459 107 KRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADL 185 (484)
T ss_pred HHCCCCCCCHHHCCCCCCCHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCC-CCE
T ss_conf 7488868610200377875212332033788022123404899999999998604533477778865021047883-223
Q ss_pred HHHHEECCCHHCCCCH---HHHHHHHHHHCCCCCEEEEECC
Q ss_conf 0130012431026888---8998888752133321577436
Q gi|254780872|r 132 FDIILNMEVIEHVDNI---PYFIKTCCSLLLSNGLMFISTI 169 (254)
Q Consensus 132 FD~V~~~~vleHv~d~---~~~l~~~~~~LkpgG~liist~ 169 (254)
|++++..+-|-|...+ ...+..+..++.|||.++|--+
T Consensus 186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred EEHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 63334354444355743188999999986068974999717
No 237
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.13 E-value=0.016 Score=36.25 Aligned_cols=106 Identities=20% Similarity=0.274 Sum_probs=67.6
Q ss_pred CCHHHCCEEEECCCHHHHHHH--HHHCCCCEEEECCHHHHHHHHHHHHHCCCCC-CCCCCCCCCC-CCC-CCCCHHHHEE
Q ss_conf 880016288856985699999--9731981699521356778888653101121-1112210012-321-1153013001
Q gi|254780872|r 63 HPFKGLRILDLGCGGGLLSEP--MAQMGATVTGIDPSTKNIAIAKNHANMKNIN-IDYRVSCAEE-IAE-TDEKFDIILN 137 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~~s~~--la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~-i~~~~~~~~~-l~~-~~~~FD~V~~ 137 (254)
..|.|+.|+=+| -.-+.+.+ |..+...|.-||+.+..|++-.+-+++.+.+ ++...-+..+ +|. ...+||+.+.
T Consensus 149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiT 227 (354)
T COG1568 149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFIT 227 (354)
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHEEEHHCCCCHHHHHHHCCEEEC
T ss_conf 675787689970-7506578898638873379983158999999999998483315540305104583988850776435
Q ss_pred CCCHHCCCCHHHHHHHHHHHCCCC---CEEEEECCC
Q ss_conf 243102688889988887521333---215774367
Q gi|254780872|r 138 MEVIEHVDNIPYFIKTCCSLLLSN---GLMFISTIN 170 (254)
Q Consensus 138 ~~vleHv~d~~~~l~~~~~~Lkpg---G~liist~N 170 (254)
+--|-++-...|+..--..||.- |++-+++..
T Consensus 228 -DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~re 262 (354)
T COG1568 228 -DPPETIKALKLFLGRGIATLKGEGCAGYFGITRRE 262 (354)
T ss_pred -CCHHHHHHHHHHHHCCHHHHCCCCCCCEEEEEECC
T ss_conf -96335799999985118873588745368664142
No 238
>pfam06962 rRNA_methylase Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.
Probab=96.11 E-value=0.012 Score=37.07 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=52.8
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCC--CCCHHHH-EECCCHHC--------CCCHHHHHHHHHH
Q ss_conf 169952135677888865310112--111122100123211--1530130-01243102--------6888899888875
Q gi|254780872|r 90 TVTGIDPSTKNIAIAKNHANMKNI--NIDYRVSCAEEIAET--DEKFDII-LNMEVIEH--------VDNIPYFIKTCCS 156 (254)
Q Consensus 90 ~V~giD~S~~~i~~Ak~~a~~~~~--~i~~~~~~~~~l~~~--~~~FD~V-~~~~vleH--------v~d~~~~l~~~~~ 156 (254)
+|.|+|+.+++|+.++.+..+.++ ++++.+.+=+.+... .+..|++ +.++-|.- -.....+|+.+.+
T Consensus 1 hV~aFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~~He~l~~~v~~~~i~~~~FNLGYLPggDk~i~T~~~tTi~Al~~al~ 80 (140)
T pfam06962 1 HVYAFDIQEEALENTKEKLEQAGLSEIVELILDSHENIDEYIPEGPVKAAIFNLGYLPGGDKSITTKPDTTLEAIKKLLE 80 (140)
T ss_pred CEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEECCHHHHHHHHHHHH
T ss_conf 95799609999999999999659875689997798889863764676689996676889998758777209999999999
Q ss_pred HCCCCCEEEEE
Q ss_conf 21333215774
Q gi|254780872|r 157 LLLSNGLMFIS 167 (254)
Q Consensus 157 ~LkpgG~liis 167 (254)
+|+|||.+.+.
T Consensus 81 lL~~gG~i~i~ 91 (140)
T pfam06962 81 LLKPGGLIILV 91 (140)
T ss_pred HHCCCCEEEEE
T ss_conf 63669899999
No 239
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.04 E-value=0.091 Score=31.60 Aligned_cols=152 Identities=18% Similarity=0.185 Sum_probs=77.8
Q ss_pred CCEEEECCCH-H-HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCC-----------CCC---CCCCCCCCCCCCC
Q ss_conf 6288856985-6-9999997319816995213567788886531011211-----------112---2100123211153
Q gi|254780872|r 68 LRILDLGCGG-G-LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINI-----------DYR---VSCAEEIAETDEK 131 (254)
Q Consensus 68 ~~VLDiGCG~-G-~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i-----------~~~---~~~~~~l~~~~~~ 131 (254)
.+|-=||+|+ | -.+..++..|.+|+-.|++++.++.|+.+....-... +-. .....++...-..
T Consensus 3 ~~VaViGaG~mG~giA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~g~~~~~~~~~~~~ri~~~~~l~~al~~ 82 (308)
T PRK06129 3 GSIAIVGAGLIGRAWAIVFARAGHRVRLWDADPAALAAAPAYIAGRLEDLAAFDLLDGESPDAVLARIRATDSLADAVAD 82 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEECCCHHHHHCC
T ss_conf 87999777899999999998589938999898899999999999999999976999876599998350722888998474
Q ss_pred HHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH-HHHHHHHHCCCCCCCCCCHH------------
Q ss_conf 01300124310268888998888752133321577436766024564-15655431046789985712------------
Q gi|254780872|r 132 FDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLL-AIIGAEYLLQWLPKGTHQYD------------ 198 (254)
Q Consensus 132 FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~-~i~~ae~il~~~P~gtH~~~------------ 198 (254)
-|+|+= .|.|-++-...+++++-+++.|+-.|.-+|--- +.|.+. ..-..|++++ +|.++
T Consensus 83 adlViE-av~E~l~iK~~lf~~le~~~~~~~IlaSnTSsl-~is~la~~~~~p~R~ig-----~HffNPp~l~pLVEIV~ 155 (308)
T PRK06129 83 ADYVQE-SAPENLELKRALFAELDALAPPHAILASSTSAL-LASAFTEHLAGRERCLV-----AHPINPPYLIPVVEVVP 155 (308)
T ss_pred CCEEEE-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-CHHHHHHHCCCCCCEEE-----ECCCCCHHCCCCEEEEC
T ss_conf 999999-980779999999999996569855898455538-89999974598541788-----77778600063156717
Q ss_pred -HCCCH---HHHHHHHHHCCCEEEEE----EEEEEC
Q ss_conf -25388---99999999869838885----505766
Q gi|254780872|r 199 -KFIKP---TEMECFLAANKVKIIDR----VGVVYN 226 (254)
Q Consensus 199 -~Fi~p---~el~~~l~~~g~~~~~~----~g~~~~ 226 (254)
...+| +...+++++-|...+-+ -|+..|
T Consensus 156 g~~Ts~~~v~~~~~~~~~lGk~PV~v~ke~pGFi~N 191 (308)
T PRK06129 156 APWTAPATVARAHALYRAAGQSPVRLRREIDGFVLN 191 (308)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH
T ss_conf 999898999999999998399889990256215899
No 240
>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.
Probab=96.03 E-value=0.0096 Score=37.67 Aligned_cols=159 Identities=16% Similarity=0.199 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCC-CEEEECCHHHHHHHH-HHHHH---CCCCCCC-
Q ss_conf 59999999886518764445880016288856985699999973198-169952135677888-86531---0112111-
Q gi|254780872|r 43 RIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGA-TVTGIDPSTKNIAIA-KNHAN---MKNINID- 116 (254)
Q Consensus 43 R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~-~V~giD~S~~~i~~A-k~~a~---~~~~~i~- 116 (254)
|--|=..++.++|... .+|+=+||+|.-||-|+..+...|| +|+|||.+.+.++.. |+--+ ....|+.
T Consensus 60 RGG~KL~~~L~~F~~~------vk~ki~lD~GsS~GGFtd~aL~~GAk~VY~vDVG~~ql~~kLR~D~Rv~~~eR~N~rG 133 (240)
T TIGR00478 60 RGGEKLKEALEEFEVD------VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRG 133 (240)
T ss_pred CHHHHHHHHCCCCCEE------ECCEEEEEECCCCCHHHHHHHHCCCCEEEEEEECCHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 0458999853543313------3786899705673048999987058467778603213343236366268964578744
Q ss_pred CC-CCCCC-CCCCC-CCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEEC-CC----C-CCHH-HHHHHH-HHHH
Q ss_conf 12-21001-23211-1530130012431026888899888875213332157743-67----6-6024-564156-5543
Q gi|254780872|r 117 YR-VSCAE-EIAET-DEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIST-IN----R-NLKA-MLLAII-GAEY 185 (254)
Q Consensus 117 ~~-~~~~~-~l~~~-~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist-~N----r-~~~s-~~~~i~-~ae~ 185 (254)
|. ..++. +-|.+ -+.+|+=+.+ ...++.++..+|.|+--+++-. |. | |+.+ ...++. .+|+
T Consensus 134 y~T~~d~~~~qP~P~lA~~DvSFiS--------l~~il~~L~~lL~P~~~~~~L~kPqFe~~R~nl~~~~kkGvV~d~~~ 205 (240)
T TIGR00478 134 YVTPADIVKDQPMPDLAVVDVSFIS--------LISILPELLLLLNPDNDLLLLVKPQFEVGRLNLEKKNKKGVVRDKEA 205 (240)
T ss_pred CCCHHHHHCCCCCCCHHHHHHHHHH--------HHHHHHHHHHHHCCCCEEEEEECCCCEEEECCEEEECCCCCEECHHH
T ss_conf 4665654078889731444457887--------99999988875088960788507752333022311157770115589
Q ss_pred HCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCE
Q ss_conf 1046789985712253889999999986983888550576677775
Q gi|254780872|r 186 LLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFCNK 231 (254)
Q Consensus 186 il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~g~~~~p~~~~ 231 (254)
+. .++ +...+..+..||++..+. .+|+.+.
T Consensus 206 ~~-----------~~l--~~~~~~~~~~~~~~~~~~---~s~~~G~ 235 (240)
T TIGR00478 206 IA-----------EAL--EKVIEKGESKDFQVKKIL---FSLIKGK 235 (240)
T ss_pred HH-----------HHH--HHHHHHHCCCCCEEEEEE---ECCCCCC
T ss_conf 99-----------999--999873215784121022---0553088
No 241
>pfam06859 Bin3 Bicoid-interacting protein 3 (Bin3). This family represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation. Note that family members contain a conserved HLN motif.
Probab=96.02 E-value=0.017 Score=36.06 Aligned_cols=84 Identities=23% Similarity=0.453 Sum_probs=55.1
Q ss_pred CHHHHEECCCHH--CCC--C--HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHH-CCCH
Q ss_conf 301300124310--268--8--88998888752133321577436766024564156554310467899857122-5388
Q gi|254780872|r 131 KFDIILNMEVIE--HVD--N--IPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDK-FIKP 203 (254)
Q Consensus 131 ~FD~V~~~~vle--Hv~--d--~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~-Fi~p 203 (254)
+||+|+|+.|.- |+. | ...++..++++|+|||.+++.- ..+.||-...-..|-+.. +|.. =++|
T Consensus 1 ~fD~i~clSvtkWIHLN~GD~Gl~~~f~~~~~~l~pgg~lilEp--Q~w~sY~k~kkl~~~~~~-------ny~~I~~rP 71 (110)
T pfam06859 1 EFDVILCLSVTKWVHLNWGDEGLKRFFRRIYRLLRPGGILILEP--QPWDSYKKRKKLSETIYK-------NYERIKLKP 71 (110)
T ss_pred CCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHCCHHHHH-------HHHHHEECH
T ss_conf 96589996620245554642889999999999618898899967--884668877314799985-------355427787
Q ss_pred HHHHHHHHH--CCCEEEEEEEE
Q ss_conf 999999998--69838885505
Q gi|254780872|r 204 TEMECFLAA--NKVKIIDRVGV 223 (254)
Q Consensus 204 ~el~~~l~~--~g~~~~~~~g~ 223 (254)
+...++|-. -||.-.+..+.
T Consensus 72 d~F~~yLl~~evGF~s~e~~~~ 93 (110)
T pfam06859 72 DQFEEYLLSPEVGFSSYELVGV 93 (110)
T ss_pred HHHHHHHHCCCCCEEEEEEECC
T ss_conf 8889998054668078999437
No 242
>PRK09117 consensus
Probab=96.02 E-value=0.12 Score=30.95 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=75.2
Q ss_pred CCEEEECCCH-H-HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC------CCC---C-----CCCCCCCCCCCCCC
Q ss_conf 6288856985-6-99999973198169952135677888865310112------111---1-----22100123211153
Q gi|254780872|r 68 LRILDLGCGG-G-LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI------NID---Y-----RVSCAEEIAETDEK 131 (254)
Q Consensus 68 ~~VLDiGCG~-G-~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~------~i~---~-----~~~~~~~l~~~~~~ 131 (254)
++|-=||+|+ | ..+..++..|.+|+-.|++++.++.++.+....-. .+. . +.....++. .-..
T Consensus 3 ~~VaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~d~~-a~~~ 81 (282)
T PRK09117 3 QTVGIIGAGTMGNGIAQACAVAGLDVVMVDISDAAVQRGLATVAGSLDRLIKKEKLTEADKAAALARIKGSTDYD-ALKD 81 (282)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHH-HHCC
T ss_conf 779998977999999999996799689998988999999999999999999706887788999984065679989-9755
Q ss_pred HHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH-HHHHHHHHCCCCCCCCCCHH------------
Q ss_conf 01300124310268888998888752133321577436766024564-15655431046789985712------------
Q gi|254780872|r 132 FDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLL-AIIGAEYLLQWLPKGTHQYD------------ 198 (254)
Q Consensus 132 FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~-~i~~ae~il~~~P~gtH~~~------------ 198 (254)
-|+|+= .|.|-++-...+++++-++++|+-.+.=+|-.- +.+.+. ..--.+++++ +|.++
T Consensus 82 aDlViE-av~E~l~iK~~lf~~l~~~~~~~~IlaSNTS~l-~i~~ia~~~~~p~R~ig-----~HffnP~~~~~LVEiv~ 154 (282)
T PRK09117 82 ADLVIE-AATENLDLKLKILKQLDALVGPDAIIATNTSSI-SITKLAAATSRPDRFIG-----MHFFNPVPMMALVELIR 154 (282)
T ss_pred CCEEEE-CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC-CCHHHHHHCCCHHHCCC-----CCCCCCCCCCCEEEECC
T ss_conf 999998-785888888999999986579981898658767-61778876498464155-----45568866584488649
Q ss_pred -HCCCH---HHHHHHHHHCCCEEEEEE
Q ss_conf -25388---999999998698388855
Q gi|254780872|r 199 -KFIKP---TEMECFLAANKVKIIDRV 221 (254)
Q Consensus 199 -~Fi~p---~el~~~l~~~g~~~~~~~ 221 (254)
...+| +.+..++++-|...+-++
T Consensus 155 g~~Ts~~~~~~~~~~~~~lgk~pV~vk 181 (282)
T PRK09117 155 GLQTSDATHAAVEALAKRLGKTPITVK 181 (282)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 999989999999999997398799981
No 243
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.92 E-value=0.067 Score=32.44 Aligned_cols=92 Identities=20% Similarity=0.250 Sum_probs=58.9
Q ss_pred CCEEEECCC--HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCC------CCCCCCCCCCCCCCCHHHHEECC
Q ss_conf 628885698--5699999973198169952135677888865310112111------12210012321115301300124
Q gi|254780872|r 68 LRILDLGCG--GGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINID------YRVSCAEEIAETDEKFDIILNME 139 (254)
Q Consensus 68 ~~VLDiGCG--~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~------~~~~~~~~l~~~~~~FD~V~~~~ 139 (254)
+||+=+|+| +++++..|++.|.+|+-++-++...+.-+ +.++.+. .....+..-+...+.||+|+..
T Consensus 1 MkI~IiGaGaiG~~~a~~L~~ag~~V~li~r~~~~~~~i~----~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~D~iiv~- 75 (307)
T PRK06522 1 MKIAILGAGAIGGLFGARLAQAGHDVTLVARGATLAEALN----ENGLRLLEGGEVFVVPVPAADDPAELGPQDLVILA- 75 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH----HCCEEEECCCCEEECCCCCCCCHHHCCCCCEEEEE-
T ss_conf 9899999149999999999848998899978888999999----68939952897698055034886674898889998-
Q ss_pred CHHCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 310268888998888752133321577
Q gi|254780872|r 140 VIEHVDNIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 140 vleHv~d~~~~l~~~~~~LkpgG~lii 166 (254)
| --.+...+++.+..++.|+..++.
T Consensus 76 v--Ks~~~~~a~~~l~~~l~~~t~iv~ 100 (307)
T PRK06522 76 V--KAYQLPAALPDLAPLLGPETVVLF 100 (307)
T ss_pred C--CCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 0--666899999999864599948999
No 244
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=95.90 E-value=0.026 Score=34.96 Aligned_cols=93 Identities=19% Similarity=0.201 Sum_probs=56.1
Q ss_pred HHCCEEE-ECCC-HHHHHHHHHHC-CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCC--CCCCHHHHEECC
Q ss_conf 0162888-5698-56999999731-9816995213567788886531011211112210012-321--115301300124
Q gi|254780872|r 66 KGLRILD-LGCG-GGLLSEPMAQM-GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE-IAE--TDEKFDIILNME 139 (254)
Q Consensus 66 ~g~~VLD-iGCG-~G~~s~~la~~-g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~-l~~--~~~~FD~V~~~~ 139 (254)
+|.+||= -||| .|.++..+++. |++|+++.-|++..+.+++.......-+++...+..+ +.. ..+.+|+|+-.
T Consensus 104 ~g~~VlI~gg~G~vG~~aiqlak~~Ga~Vi~t~~s~~k~~~~~~lG~~~~~v~~~~~~~~~~~v~~~t~g~gvDvv~d~- 182 (288)
T smart00829 104 PGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLRELGIPDDHIFSSRDLSFADEILRATGGRGVDVVLNS- 182 (288)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEEEC-
T ss_conf 9999999789867779999999973983003408889999999769996076217995099999987089882799989-
Q ss_pred CHHCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 31026888899888875213332157
Q gi|254780872|r 140 VIEHVDNIPYFIKTCCSLLLSNGLMF 165 (254)
Q Consensus 140 vleHv~d~~~~l~~~~~~LkpgG~li 165 (254)
+. ...+.+..++|+|+|.++
T Consensus 183 ----vg--g~~~~~~~~~l~~~G~~v 202 (288)
T smart00829 183 ----LA--GEFLDASLRCLAPGGRFV 202 (288)
T ss_pred ----CC--HHHHHHHHHHHCCCCEEE
T ss_conf ----86--899999999753698899
No 245
>TIGR00095 TIGR00095 putative methyltransferase; InterPro: IPR004398 This is a family of conserved hypothetical proteins, which includes a putative methylase..
Probab=95.85 E-value=0.017 Score=36.09 Aligned_cols=104 Identities=17% Similarity=0.202 Sum_probs=65.8
Q ss_pred HHHCCEEEECCCHHHHH-HHHHHCCCCEEEECCHHHHHHHHHHHHHC-------CCCCCCCCCCCCCC---CCCCCC-CH
Q ss_conf 00162888569856999-99973198169952135677888865310-------11211112210012---321115-30
Q gi|254780872|r 65 FKGLRILDLGCGGGLLS-EPMAQMGATVTGIDPSTKNIAIAKNHANM-------KNINIDYRVSCAEE---IAETDE-KF 132 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s-~~la~~g~~V~giD~S~~~i~~Ak~~a~~-------~~~~i~~~~~~~~~---l~~~~~-~F 132 (254)
+.|.++||+=.|+|.+. |+|+|-...|+-||.+.....+-+.+... .+-.-.|+.+.... ++..+. .|
T Consensus 54 i~~~~~LD~FAGsG~LG~EALSRgA~~~~f~E~d~~~~~~l~~N~~~L~nrlk~~~~~~~~~~~~~~~~~~~~~~~ts~~ 133 (210)
T TIGR00095 54 IVGAHFLDLFAGSGSLGLEALSRGAKSAVFVEQDKKVAQTLKENLSTLKNRLKLSGEQATVLNDAERALLFLAKKQTSPF 133 (210)
T ss_pred HCCCEEEEEECCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCCCE
T ss_conf 36872788540644653766401416237873686799999999999888715853000000025666577651799611
Q ss_pred HHHEECCCHHCCCC--HH-------HHHHHHHHHCCCCCEEEEECC
Q ss_conf 13001243102688--88-------998888752133321577436
Q gi|254780872|r 133 DIILNMEVIEHVDN--IP-------YFIKTCCSLLLSNGLMFISTI 169 (254)
Q Consensus 133 D~V~~~~vleHv~d--~~-------~~l~~~~~~LkpgG~liist~ 169 (254)
|+|+.==-. +... .. .+|+.+...|+|+|.+++...
T Consensus 134 d~iylDPPf-~~~~ad~~~~l~l~~~alerl~~~L~~~~~i~ve~~ 178 (210)
T TIGR00095 134 DIIYLDPPF-NTGLADLEAILELLGEALERLNKWLNPKGLIVVEYD 178 (210)
T ss_pred EEEEECCCC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 478714888-876103799999999999987310487857998634
No 246
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=95.83 E-value=0.17 Score=29.90 Aligned_cols=99 Identities=18% Similarity=0.209 Sum_probs=56.3
Q ss_pred CEEEECCCH-H-HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCC-C---CCCCC----CCCCCCCCCCH-HHHEE
Q ss_conf 288856985-6-9999997319816995213567788886531011211-1---12210----01232111530-13001
Q gi|254780872|r 69 RILDLGCGG-G-LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINI-D---YRVSC----AEEIAETDEKF-DIILN 137 (254)
Q Consensus 69 ~VLDiGCG~-G-~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i-~---~~~~~----~~~l~~~~~~F-D~V~~ 137 (254)
+|-=||+|+ | ..+..++..|.+|+-.|++++.++.++.+....-... . ..... .+.+... ..+ ++.-|
T Consensus 1 kV~ViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~~~~a 79 (180)
T pfam02737 1 KVAVIGAGTMGAGIAQVFARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRLTEEDVDAVLARISFT-TDLADAVDA 79 (180)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC-CCHHHHCCC
T ss_conf 9899997889999999999679939999799899999999999989999972567567699998524105-889997589
Q ss_pred CCCHHCCC-C---HHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 24310268-8---8899888875213332157743
Q gi|254780872|r 138 MEVIEHVD-N---IPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 138 ~~vleHv~-d---~~~~l~~~~~~LkpgG~liist 168 (254)
--|+|-++ | ...+++++.+.++|+-.+.-+|
T Consensus 80 dlViEav~E~l~iK~~l~~~l~~~~~~~~IlaSnT 114 (180)
T pfam02737 80 DLVIEAVPENLDLKRELFAELDAIAPPDAILASNT 114 (180)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHCHHHEEEEECC
T ss_conf 99999251768899999999997430330887526
No 247
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.81 E-value=0.033 Score=34.38 Aligned_cols=100 Identities=19% Similarity=0.211 Sum_probs=59.1
Q ss_pred CCEEEECCCH-H-HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCC-CC---CCCCCC----C------CCCCCCCC
Q ss_conf 6288856985-6-999999731981699521356778888653101121-11---122100----1------23211153
Q gi|254780872|r 68 LRILDLGCGG-G-LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNIN-ID---YRVSCA----E------EIAETDEK 131 (254)
Q Consensus 68 ~~VLDiGCG~-G-~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~-i~---~~~~~~----~------~l~~~~~~ 131 (254)
++|.=||+|+ | ..+..++..|.+|+-+|++++.++.|+.+....-.+ +. ...... . ++...-+.
T Consensus 3 kkV~ViGaG~MG~~IA~~~a~~G~~V~l~D~~~e~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dl~~a~~~ 82 (289)
T PRK09260 3 EKIVVVGAGVMGRGIAYVFASSGFQTTLVDISQEQLASAQQEIESILEDGVALGKVTEAAAQAALARLSYSLDLKEAVAG 82 (289)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHCC
T ss_conf 76999796887899999999689988999799899999999999999999871799989999999558766888998476
Q ss_pred HHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 0130012431026888899888875213332157743
Q gi|254780872|r 132 FDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 132 FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist 168 (254)
-|+|+= .|.|-++-...+++++.++++|+-.+.=.|
T Consensus 83 aDlViE-av~E~l~iK~~v~~~l~~~~~~~~IlaSNT 118 (289)
T PRK09260 83 ADLLIE-AVPEKLEIKQAVFETADAHAPAEALIATNT 118 (289)
T ss_pred CCEEEE-CCCCCHHHCHHHHHHHHHCCCCCCEEEECC
T ss_conf 999998-886863236899999860689980898558
No 248
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.81 E-value=0.18 Score=29.83 Aligned_cols=162 Identities=14% Similarity=0.138 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHHCCCC-CCCCC
Q ss_conf 599999998865187644458800162888569856999999731---98169952135677888865310112-11112
Q gi|254780872|r 43 RIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNI-NIDYR 118 (254)
Q Consensus 43 R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~---g~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~ 118 (254)
|+..+++++....... ..-+||++|+++|+++....+. |.-..-++.+.+.-....+-.....+ .-...
T Consensus 476 ~l~~~~~rl~~~~~~q-------r~~~vl~l~~~sll~~~~~l~~~peggv~~~~~~~~~~~rL~aQl~lLdpL~RP~Ll 548 (726)
T PRK13341 476 RLRILRDRLWSGITWQ-------RHDRVLNLANRSLLWALEPLRAVPEGGVTVLCESSDDIVRLEAQLDLLDPLGRPVLL 548 (726)
T ss_pred HHHHHHHHHHCCCCCC-------CCCEEEEECCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCHHCCCCEE
T ss_conf 9999999984336656-------343599833851265267786189986699837888999999998746811197112
Q ss_pred CCCCCCCC--CCCCCHHHHEECCCHHCCCCHH--HHHHHHHHHCCCCCEEEE--ECCCCCCHHHHH-----------HHH
Q ss_conf 21001232--1115301300124310268888--998888752133321577--436766024564-----------156
Q gi|254780872|r 119 VSCAEEIA--ETDEKFDIILNMEVIEHVDNIP--YFIKTCCSLLLSNGLMFI--STINRNLKAMLL-----------AII 181 (254)
Q Consensus 119 ~~~~~~l~--~~~~~FD~V~~~~vleHv~d~~--~~l~~~~~~LkpgG~lii--st~Nr~~~s~~~-----------~i~ 181 (254)
.+..+++. ..+..||.|.--.++..+.+.. .+++.+..+|.|+|.+.+ |.|..-+..+++ .+.
T Consensus 549 ~~~~~~l~~L~~~~~FE~IgGR~~~~~l~~~~~~~~~q~L~~~l~p~g~l~Ll~S~P~~Gpa~all~~~~~~~~~l~~L~ 628 (726)
T PRK13341 549 DAGLLALKYLPANLQFEWIGGRNGLDDLLYKADEELWQQLTEKLTPNGGLRLLISQPEAGPALALLLKAPVEDKLLSALL 628 (726)
T ss_pred ECCCHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCCCHHHHHHHHH
T ss_conf 16711465379876424783332002342256999999999865998669986357764807887356940489999999
Q ss_pred HHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 554310467899857122538899999999869838885
Q gi|254780872|r 182 GAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDR 220 (254)
Q Consensus 182 ~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~ 220 (254)
.+|- .|+-.. -.|..|.+.++++|+.+.-.
T Consensus 629 ~aEe--~wl~~~-------~~~~~Lqq~le~~gwsl~~e 658 (726)
T PRK13341 629 EAEE--LWLKSQ-------SMPALLQQQLEEAGWSLGIE 658 (726)
T ss_pred HHHH--HHHHCC-------CCHHHHHHHHHHCCCCCEEE
T ss_conf 9999--996268-------88599999999748845351
No 249
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.81 E-value=0.018 Score=36.03 Aligned_cols=100 Identities=19% Similarity=0.295 Sum_probs=65.5
Q ss_pred HHHCCEEEECCC-HHHHHHHHH-HCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCC------C-----CCCC-------
Q ss_conf 001628885698-569999997-3198169952135677888865310112111122------1-----0012-------
Q gi|254780872|r 65 FKGLRILDLGCG-GGLLSEPMA-QMGATVTGIDPSTKNIAIAKNHANMKNINIDYRV------S-----CAEE------- 124 (254)
Q Consensus 65 l~g~~VLDiGCG-~G~~s~~la-~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~------~-----~~~~------- 124 (254)
....+||=+|+| .|+-+...| ++|+.|++.|..+...+..+.- ...-+.+++.. + +.+.
T Consensus 163 VpPAkVlViGaGVAGlqAi~tA~~LGA~V~a~DvR~~~~EqveSl-Ga~fv~v~~~e~~~~~gGYAk~~s~e~~~~q~~~ 241 (510)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVKEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (510)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHH-CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 788528997464777999999962797899965878899999970-6742552101024457850354567899999999
Q ss_pred CCCCCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 32111530130012431026888899888875213332157
Q gi|254780872|r 125 IAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMF 165 (254)
Q Consensus 125 l~~~~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~li 165 (254)
+...-..-|+|++.-.+.--+-|..+=+++-+.+|||..++
T Consensus 242 ~~e~~~~aDiVItTalIPG~~AP~LIt~emV~~MKpGSVIV 282 (510)
T PRK09424 242 FAEQAKEVDIIITTALIPGKPAPKLITKEMVDSMKPGSVIV 282 (510)
T ss_pred HHHHHHHCCEEEEEEECCCCCCCEECCHHHHHHCCCCCEEE
T ss_conf 99997424779986541899899703799995269997899
No 250
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.80 E-value=0.019 Score=35.88 Aligned_cols=78 Identities=21% Similarity=0.239 Sum_probs=53.1
Q ss_pred CCCCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------C
Q ss_conf 4588001628885698569---99999731981699521356778888653101121111221001232----------1
Q gi|254780872|r 61 DTHPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA----------E 127 (254)
Q Consensus 61 ~~~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~----------~ 127 (254)
....|+|+.+|=-|++.|+ .+..|++.|++|+.+|-+++.++.........+.++.+...|+.+.. .
T Consensus 34 ~P~dL~GKvaLITGassGIG~aiA~~la~~Ga~Vvl~~R~~~~l~~~~~~i~~~g~~~~~~~~Dvtd~~~v~~~v~~~~~ 113 (290)
T PRK05866 34 TPVDLTGKRILLTGASSGIGEAAAEKFARRGATVVAVARRKDLLDAVADRITAAGGDAMAIPCDLSDLDAVDALVADVEE 113 (290)
T ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 49789999899908130999999999998699899998999999999999996499089997788989999999999999
Q ss_pred CCCCHHHHEEC
Q ss_conf 11530130012
Q gi|254780872|r 128 TDEKFDIILNM 138 (254)
Q Consensus 128 ~~~~FD~V~~~ 138 (254)
.-+..|+++..
T Consensus 114 ~~G~iDiLVNN 124 (290)
T PRK05866 114 RIGGVDILINN 124 (290)
T ss_pred HHCCCCEEEEC
T ss_conf 85998889975
No 251
>PHA02056 putative methyltransferase
Probab=95.77 E-value=0.035 Score=34.18 Aligned_cols=146 Identities=16% Similarity=0.245 Sum_probs=86.9
Q ss_pred CCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCC-
Q ss_conf 62888569856999999731--981699521356778888653101121111221001232111530130012431026-
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHV- 144 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv- 144 (254)
.+|+|++.|-|.+|.++..+ .-+++.|+..+..+.+.|+ --+..+++++++-+.+. .+.||++++.--+--+
T Consensus 66 G~iiDLCAGIG~LSy~~~~r~kp~~ivCVErN~~y~~vGkk----ilPeAtWI~~Dv~~~~~-~~~FD~aIsNPPFG~i~ 140 (279)
T PHA02056 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKR----LLPEAEWITSDVFEFES-NEKFDVVISNPPFGKIN 140 (279)
T ss_pred CEEEEECCCCCHHHHHHHHCCCCCCEEEEEECHHHHHHHHH----CCCCCEEEECCEECCCC-CCCEEEEECCCCCCCCC
T ss_conf 53888214612357999850688635899408579886432----07640277323130356-66200453389976433
Q ss_pred -CCHH-----------HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHH
Q ss_conf -8888-----------9988887521333215774367660245641565543104678998571225388999999998
Q gi|254780872|r 145 -DNIP-----------YFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAA 212 (254)
Q Consensus 145 -~d~~-----------~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~ 212 (254)
.|-+ --+-++...+..-|.+++--.-. ++--.|-..|+-=.+..+-.++.++
T Consensus 141 ~~~sK~~~~ytg~~FE~~Vi~~a~~~Ad~G~FIiPqmSA----------------~F~YSG~~~y~~~~~s~k~~Kf~~q 204 (279)
T PHA02056 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPSGSA----------------GFAYSGRPYYDGTMKSNKYLKWSKQ 204 (279)
T ss_pred CCCCCCCCCCCCCCEEEEEEHHHHHHHCCCEEEEECCCC----------------CCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 333578866457611577324566763063499614666----------------7675787333666664266767864
Q ss_pred CCCEEEEEEEEEECCCCCEEEE
Q ss_conf 6983888550576677775786
Q gi|254780872|r 213 NKVKIIDRVGVVYNVFCNKWQL 234 (254)
Q Consensus 213 ~g~~~~~~~g~~~~p~~~~w~~ 234 (254)
.|+..-.-.|+.-..+...|+-
T Consensus 205 TGl~~~~gCGiDTs~y~d~W~g 226 (279)
T PHA02056 205 TGLVTYAGCGIDTSIYRDEWHS 226 (279)
T ss_pred CCEEECCCCCCCCEEEHHHCCC
T ss_conf 4747407977440042413058
No 252
>pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase. The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes.
Probab=95.75 E-value=0.11 Score=31.19 Aligned_cols=96 Identities=20% Similarity=0.378 Sum_probs=65.3
Q ss_pred CCEEEECCCHH-HHHHHH---HHCC--CCEEEECCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCCCHHHHEECC
Q ss_conf 62888569856-999999---7319--8169952135677888865310112--11112210012321115301300124
Q gi|254780872|r 68 LRILDLGCGGG-LLSEPM---AQMG--ATVTGIDPSTKNIAIAKNHANMKNI--NIDYRVSCAEEIAETDEKFDIILNME 139 (254)
Q Consensus 68 ~~VLDiGCG~G-~~s~~l---a~~g--~~V~giD~S~~~i~~Ak~~a~~~~~--~i~~~~~~~~~l~~~~~~FD~V~~~~ 139 (254)
..|+=+|.|-| +....| ++.| .+|.+|+=.++++-..+.+.+.... .|+...+|..... ..++.|++++ +
T Consensus 188 ~vI~VvGAGRGPLV~~~l~A~~~~~~~v~i~AVEKNpnA~vtL~~r~n~~~W~~~V~ii~~DMR~w~-~p~k~Di~VS-E 265 (447)
T pfam05185 188 LVILVVGAGRGPLVDRALRAAEETGRKVKIYAVEKNPNAVVTLQKRVNFEEWGDKVTLISSDMREWK-GPEKADILVS-E 265 (447)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCHHCCC-CCCCCCEEEE-E
T ss_conf 6999985896489999999999819966999995687799999998505431780699908000579-9877358975-2
Q ss_pred CHHCCCCH---HHHHHHHHHHCCCCCEEE
Q ss_conf 31026888---899888875213332157
Q gi|254780872|r 140 VIEHVDNI---PYFIKTCCSLLLSNGLMF 165 (254)
Q Consensus 140 vleHv~d~---~~~l~~~~~~LkpgG~li 165 (254)
.|=-+.|= ...|..+.+.|||+|+.|
T Consensus 266 LLGSFGDNELSPECLdg~q~~lk~~gIsI 294 (447)
T pfam05185 266 LLGSFGDNELSPECLDGAQRFLKPDGISI 294 (447)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 11666665579778778997468984682
No 253
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.69 E-value=0.02 Score=35.68 Aligned_cols=76 Identities=17% Similarity=0.281 Sum_probs=52.8
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------CCC
Q ss_conf 88001628885698569---99999731981699521356778888653101121111221001232----------111
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA----------ETD 129 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~----------~~~ 129 (254)
+.|+|+.+|=-|++.|+ .+..|++.|++|..+|.+++.++.+....+..+.+..+...|+.+.. ..-
T Consensus 2 ksL~gKvalITGas~GIG~aiA~~la~~Ga~V~l~~r~~~~l~~~~~~i~~~g~~~~~~~~Dvtd~~~v~~~v~~~~~~~ 81 (238)
T PRK07666 2 ESLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARSEENLKAVAKEVEAEGVKAVIATADVSDYEEVTTAIETLKNGL 81 (238)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 89999989991637789999999999879989999899999999999999559927999930799999999999999981
Q ss_pred CCHHHHEEC
Q ss_conf 530130012
Q gi|254780872|r 130 EKFDIILNM 138 (254)
Q Consensus 130 ~~FD~V~~~ 138 (254)
+..|+++..
T Consensus 82 G~iDiLVNN 90 (238)
T PRK07666 82 GSIDILINN 90 (238)
T ss_pred CCCCEEEEC
T ss_conf 998789984
No 254
>PRK07109 short chain dehydrogenase; Provisional
Probab=95.65 E-value=0.021 Score=35.53 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=53.2
Q ss_pred CCCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------CC
Q ss_conf 588001628885698569---99999731981699521356778888653101121111221001232----------11
Q gi|254780872|r 62 THPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA----------ET 128 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~----------~~ 128 (254)
.+|++|+.||=.||.+|+ +++.+++.|++|..++-+++.++.+....+..+.++.+...|+.+.. ..
T Consensus 3 ~k~l~~KvVvITGASsGIGra~A~~fA~~Ga~Vvl~aR~~~~L~~~a~e~~~~G~~~~~~~~DVsd~~~v~~~~~~~~~~ 82 (338)
T PRK07109 3 LKPLGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEGLAAEIRAAGGEALAVVADVADAEAVQAAADRAEEE 82 (338)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 96069898999484349999999999987998999989999999999999963981899980179999999999999998
Q ss_pred CCCHHHHEE
Q ss_conf 153013001
Q gi|254780872|r 129 DEKFDIILN 137 (254)
Q Consensus 129 ~~~FD~V~~ 137 (254)
.+..|+.+.
T Consensus 83 ~G~IDvlVN 91 (338)
T PRK07109 83 LGPIDTWVN 91 (338)
T ss_pred HCCCCEEEE
T ss_conf 499888865
No 255
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.64 E-value=0.2 Score=29.43 Aligned_cols=152 Identities=16% Similarity=0.151 Sum_probs=77.0
Q ss_pred CCEEEECCCH-H-HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCC--C------CCCCCCCCCCCCCCHHHHEE
Q ss_conf 6288856985-6-99999973198169952135677888865310112111--1------22100123211153013001
Q gi|254780872|r 68 LRILDLGCGG-G-LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINID--Y------RVSCAEEIAETDEKFDIILN 137 (254)
Q Consensus 68 ~~VLDiGCG~-G-~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~--~------~~~~~~~l~~~~~~FD~V~~ 137 (254)
++|-=||+|+ | -.+..++..|.+|+-+|++++.++.++......-.... - +.....++. .-..-|+|+=
T Consensus 6 k~VaViGAG~MG~gIA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~i~~~~~l~-a~~~aDlViE 84 (310)
T PRK06130 6 QNLAIIGAGAMGSGIAALFASKGLDVVLIDPMPGALERAAQVIERQLGVYAPGAIAGTLQRIRMDAGLE-AACGADLVIE 84 (310)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEECCCHH-HHCCCCEEEE
T ss_conf 889897877999999999985899889997999999999999999865327666999874102137888-9668999998
Q ss_pred CCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH-HHHHHHHHCCCCCCCCCCHH-------------HCCCH
Q ss_conf 24310268888998888752133321577436766024564-15655431046789985712-------------25388
Q gi|254780872|r 138 MEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLL-AIIGAEYLLQWLPKGTHQYD-------------KFIKP 203 (254)
Q Consensus 138 ~~vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~-~i~~ae~il~~~P~gtH~~~-------------~Fi~p 203 (254)
.|.|-++-...+++++-++++|+-.+.=.|=.- +.+-+. ..--.|++++ +|.++ ...+|
T Consensus 85 -av~E~l~iK~~lf~~le~~~~~~~IlASNTSsl-~is~ia~~~~~p~R~ig-----~HffnP~~~m~LVEIv~g~~Ts~ 157 (310)
T PRK06130 85 -AVPEKLDLKRDIFARLDTLCDPQTIFATNTSGL-SINAIAQAVTRRERFVG-----THFFTPADVIPLVEVVRNDDTSP 157 (310)
T ss_pred -CCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCC-CCHHHHHHCCCHHHEEE-----EEECCCCCCCCCEEECCCCCCCH
T ss_conf -881778999999999860689883899648877-60678886389878155-----44437767766652237898989
Q ss_pred ---HHHHHHHHHCCCEEEEE----EEEEECC
Q ss_conf ---99999999869838885----5057667
Q gi|254780872|r 204 ---TEMECFLAANKVKIIDR----VGVVYNV 227 (254)
Q Consensus 204 ---~el~~~l~~~g~~~~~~----~g~~~~p 227 (254)
+.+.+++++.|.+.+-+ -|+..|-
T Consensus 158 ~~~~~~~~~~~~~gk~pvvv~kd~pGFi~NR 188 (310)
T PRK06130 158 QTVATVMAMLRSIGKRPVLVKKDIPGFIANR 188 (310)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCHHH
T ss_conf 9999999999971987999886658801888
No 256
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.61 E-value=0.21 Score=29.36 Aligned_cols=99 Identities=14% Similarity=0.224 Sum_probs=59.0
Q ss_pred CCEEEECCCH-H-HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCC-------C-CC---CCC---CCCCCCCCCCCCCC
Q ss_conf 6288856985-6-999999731981699521356778888653101-------1-21---111---22100123211153
Q gi|254780872|r 68 LRILDLGCGG-G-LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMK-------N-IN---IDY---RVSCAEEIAETDEK 131 (254)
Q Consensus 68 ~~VLDiGCG~-G-~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~-------~-~~---i~~---~~~~~~~l~~~~~~ 131 (254)
++|-=||+|+ | ..+..++..|.+|+-.|++++.++.++.+.... + +. ..- +.....++.. -..
T Consensus 4 ~~VaViGaG~mG~~IA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~-~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDEAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LKD 82 (282)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHH-HCC
T ss_conf 6899989788999999999957993899979989999999999999999997088642669999952636688889-675
Q ss_pred HHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 0130012431026888899888875213332157743
Q gi|254780872|r 132 FDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 132 FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist 168 (254)
-|+|+= .|.|-++-...+++++.+.++|+-.+.=+|
T Consensus 83 aDlViE-av~E~l~iK~~vf~~le~~~~~~~IlaSnT 118 (282)
T PRK05808 83 ADLVIE-AAVENMDIKKKIFAQLDEIAKPEAILATNT 118 (282)
T ss_pred CCEEEE-CCCCCHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 999998-775634556999999995579984899758
No 257
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=95.54 E-value=0.026 Score=35.02 Aligned_cols=62 Identities=16% Similarity=0.118 Sum_probs=45.9
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 88001628885698569---999997319816995213567788886531011211112210012
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~ 124 (254)
+.|+|+.+|=.|.+.|+ .++.|++.|++|+.+|.++..++.+....+..+.++.+...|+.+
T Consensus 2 ~~L~gK~alITGgs~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dl~~ 66 (253)
T PRK12826 2 RDLMGRVALVTGAARGIGRAIAVRFAADGADVIVVDICGQAAAATAELVAAAGGKARAYQVDVRD 66 (253)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 98899889994897789999999999879989999898899999999998509958999951799
No 258
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.52 E-value=0.025 Score=35.06 Aligned_cols=75 Identities=19% Similarity=0.186 Sum_probs=52.1
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------CCCC
Q ss_conf 8001628885698569---99999731981699521356778888653101121111221001232----------1115
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA----------ETDE 130 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~----------~~~~ 130 (254)
.|+|+.+|=.|++.|+ .++.|++.|++|+.+|.+++-++.+.......+.++.+...|+.+.. ...+
T Consensus 2 ~L~~Kv~lITGgs~GIG~a~a~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGARVVIYDSNEEAAEALAEELRAAGGEAALLVFDVTDEAAVRALIEAAVERFG 81 (246)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCC
T ss_conf 98998899938975899999999998799999997999999999999996599489999728999999999999999749
Q ss_pred CHHHHEEC
Q ss_conf 30130012
Q gi|254780872|r 131 KFDIILNM 138 (254)
Q Consensus 131 ~FD~V~~~ 138 (254)
..|++++.
T Consensus 82 ~iDilvnn 89 (246)
T PRK05653 82 GLDVLVNN 89 (246)
T ss_pred CCCEEEEC
T ss_conf 98699989
No 259
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=95.50 E-value=0.13 Score=30.71 Aligned_cols=121 Identities=14% Similarity=0.063 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEECCCH--HHHHH-HHHHCCCCEEEECCHHHHHHHHHHHHHCCCC-----
Q ss_conf 659999999886518764445880016288856985--69999-9973198169952135677888865310112-----
Q gi|254780872|r 42 VRIKYIQDKIMQHFQCKSDDTHPFKGLRILDLGCGG--GLLSE-PMAQMGATVTGIDPSTKNIAIAKNHANMKNI----- 113 (254)
Q Consensus 42 ~R~~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~--G~~s~-~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~----- 113 (254)
+|+-|..+...+.... ....|.+=.+|-=||.|+ +-.+. .+++.|.+|+-+|++++.++.+..+....-.
T Consensus 286 Lr~lFfa~~~~kk~~~--~~~~p~~i~kv~ViGaG~MG~gIA~~~a~~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~v~~ 363 (706)
T PRK11154 286 LRSIFFATTEMKKETG--SDAPPRPVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKR 363 (706)
T ss_pred HHHHHHHHHHHCCCCC--CCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999988998625568--88887767679998647323899999999869879999799999999999889999999861
Q ss_pred -CCCCC--C------CCCCCCCCCCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf -11112--2------10012321115301300124310268888998888752133321577
Q gi|254780872|r 114 -NIDYR--V------SCAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 114 -~i~~~--~------~~~~~l~~~~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~lii 166 (254)
.++-. . ....++. .-..-|+|+- .|.|.+.-...+++++..+++|+.+|.-
T Consensus 364 g~~~~~~~~~~l~~i~~~~~~~-~~~~~DlVIE-Av~E~~~~K~~v~~~le~~~~~~aIlAt 423 (706)
T PRK11154 364 RHMTPAERDKQMALISGTTDYR-GFKHADLVIE-AVFEDLALKQQMVADVEQNCAEHTIFAS 423 (706)
T ss_pred CCCCHHHHHHHHHCEEEECCHH-HHCCCCEEEE-ECCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 8999899999862241004412-3156887999-7145288899999999964798858950
No 260
>PRK06139 short chain dehydrogenase; Provisional
Probab=95.50 E-value=0.027 Score=34.85 Aligned_cols=76 Identities=13% Similarity=0.168 Sum_probs=52.0
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------CCC
Q ss_conf 88001628885698569---99999731981699521356778888653101121111221001232----------111
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA----------ETD 129 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~----------~~~ 129 (254)
.||+|+.||=-|++.|+ +++.+++.|++|..+|.+++.++.+....+..+.++.+...|+.+.. ...
T Consensus 2 g~L~gKvvlITGASsGIG~aiA~~~A~~Ga~Vvl~~R~~~~L~~~a~e~~~~G~~~~~v~~DVsd~~~v~~~~~~~~~~~ 81 (324)
T PRK06139 2 GPLHGAVVVITGASSGIGRATAEAFARRGARLVLAARDEEALFEVAEECRALGAEVLVVPTDVTHADQVQALATQAASFL 81 (324)
T ss_pred CCCCCCEEEEECHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 98599779993825499999999999879989999899999999999999549948999766788578999999999974
Q ss_pred CCHHHHEEC
Q ss_conf 530130012
Q gi|254780872|r 130 EKFDIILNM 138 (254)
Q Consensus 130 ~~FD~V~~~ 138 (254)
+..|+++..
T Consensus 82 G~IDiLVNN 90 (324)
T PRK06139 82 GRIDVWFNN 90 (324)
T ss_pred CCCCEEEEC
T ss_conf 998788645
No 261
>KOG3115 consensus
Probab=95.50 E-value=0.039 Score=33.93 Aligned_cols=100 Identities=18% Similarity=0.168 Sum_probs=51.1
Q ss_pred HCCEEEECCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHH--HHC-----CC-CCCCCCCCCCCCCCCCCCCHHHHE
Q ss_conf 1628885698569999997319--8169952135677888865--310-----11-211112210012321115301300
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQMG--ATVTGIDPSTKNIAIAKNH--ANM-----KN-INIDYRVSCAEEIAETDEKFDIIL 136 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~~g--~~V~giD~S~~~i~~Ak~~--a~~-----~~-~~i~~~~~~~~~l~~~~~~FD~V~ 136 (254)
.-.+.|||||-|-+...|+.+- .-+.|.++-.+.-+..+.+ |.. .. .|+......+-. +..+-|.-=.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk--~lpn~f~kgq 138 (249)
T KOG3115 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMK--FLPNFFEKGQ 138 (249)
T ss_pred CCEEEEECCCCCCHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHH--HCCCHHHHCC
T ss_conf 64278604676501012054686301220012688889999999997526543345653034212022--0510343123
Q ss_pred ECCCHHCCCCH-------------HHHHHHHHHHCCCCCEEEEEC
Q ss_conf 12431026888-------------899888875213332157743
Q gi|254780872|r 137 NMEVIEHVDNI-------------PYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 137 ~~~vleHv~d~-------------~~~l~~~~~~LkpgG~liist 168 (254)
.+-++.-.+|| ...+.+..-+|++||.++..|
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred CCCCEEECCCHHHHHHHCCCEEECHHHHHHHHHHHHCCCEEEEEE
T ss_conf 344403258805766521210120347987774221384489970
No 262
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=95.49 E-value=0.024 Score=35.20 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=51.6
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC----------CC
Q ss_conf 88001628885698569---999997319816995213567788886531011211112210012321----------11
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAE----------TD 129 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~----------~~ 129 (254)
-.|+|+.+|=-|.+.|+ .+..|++.|++|..+|.+++.++.+....+..+.++.+...|+.+... .-
T Consensus 6 f~L~gKvalVTGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dvtd~~~v~~~~~~~~~~~ 85 (278)
T PRK08277 6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVEEIKANGGEAIALKADVLDKESLEQARQQILKDF 85 (278)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 38899989995867489999999999879989999798899999999998459909999824899999999999999984
Q ss_pred CCHHHHEEC
Q ss_conf 530130012
Q gi|254780872|r 130 EKFDIILNM 138 (254)
Q Consensus 130 ~~FD~V~~~ 138 (254)
+..|+++..
T Consensus 86 G~iDiLVNn 94 (278)
T PRK08277 86 GRCDILING 94 (278)
T ss_pred CCCCEEEEC
T ss_conf 998889988
No 263
>PRK04148 hypothetical protein; Provisional
Probab=95.48 E-value=0.061 Score=32.67 Aligned_cols=90 Identities=21% Similarity=0.181 Sum_probs=54.0
Q ss_pred HHCCEEEECCC-HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCHHHHEECCCHHC
Q ss_conf 01628885698-569999997319816995213567788886531011211112210012321-1153013001243102
Q gi|254780872|r 66 KGLRILDLGCG-GGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAE-TDEKFDIILNMEVIEH 143 (254)
Q Consensus 66 ~g~~VLDiGCG-~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~-~~~~FD~V~~~~vleH 143 (254)
++.+|.|+|-| ---.|..|++.|++|+++|+.+.+++-|+ ..|++ +...|+.+-.. .-+.-|+|++. .-
T Consensus 16 ~~~kIvEvGIGf~~~vA~~L~e~g~dv~~~Din~~aV~~a~----~~Gl~--~v~DDif~P~l~iY~~a~lIYSI---RP 86 (135)
T PRK04148 16 KNGKIAELGIGFYFKVAKKLKESGFDVIVIDINKKAVEKAK----KLGLN--AFVDDIFNPNLEIYKNAKLIYSI---RP 86 (135)
T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCHHHHHHHH----HCCCC--EEECCCCCCCHHHHCCCCEEEEE---CC
T ss_conf 28738999236667899999874998899957655432212----32876--37515889988885178879981---89
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 68888998888752133321577
Q gi|254780872|r 144 VDNIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 144 v~d~~~~l~~~~~~LkpgG~lii 166 (254)
-++....+-++++.++ .-++|
T Consensus 87 p~Elq~~il~lakkv~--~dliI 107 (135)
T PRK04148 87 PRDLQPFILELAKKLN--CPLYI 107 (135)
T ss_pred CHHHHHHHHHHHHHCC--CCEEE
T ss_conf 8788899999999759--98999
No 264
>pfam03141 DUF248 Putative methyltransferase. Members of this family of hypothetical plant proteins are probably methyltransferases: several of the aligned sequences either match the methyltransferase profile, or contain a SAM-binding motif. A protein from Arabidopsis thaliana contains both. Several family members are described as ankyrin like.
Probab=95.47 E-value=0.11 Score=31.18 Aligned_cols=95 Identities=13% Similarity=0.226 Sum_probs=62.6
Q ss_pred CCEEEECCCHHHHHHHHHHCCCCEEEECCH--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCC
Q ss_conf 628885698569999997319816995213--567788886531011211112210012321115301300124310268
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQMGATVTGIDPS--TKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVD 145 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~g~~V~giD~S--~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~ 145 (254)
.+|+|.-.|-|-|+.+|.....=|.-|=+. ++-|.+ .-..|+ |-..+.-.|.+.--..+||++-+.+++-+..
T Consensus 367 RNVMDMnA~~GGFAAAL~~~~vWVMNVVP~~~~nTL~v----IydRGL-iG~yHDWCE~FsTYPRTYDLlHA~~lfS~~~ 441 (506)
T pfam03141 367 RNVMDMNAGFGGFAAALIDDPVWVMNVVPVDSPDTLPV----IYDRGL-IGIYHDWCEPFSTYPRTYDLLHADHLFSLYK 441 (506)
T ss_pred EEEEECCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCE----EEECCC-CCEEECCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 12221244421588986379804998355899987545----875442-1010022455788885077773532347761
Q ss_pred ---CHHHHHHHHHHHCCCCCEEEEE
Q ss_conf ---8889988887521333215774
Q gi|254780872|r 146 ---NIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 146 ---d~~~~l~~~~~~LkpgG~liis 167 (254)
+...++-|+-|+|+|+|.++|-
T Consensus 442 ~rC~~~dillEMDRILRP~G~vIiR 466 (506)
T pfam03141 442 KRCNLEDILLEMDRILRPGGAVIIR 466 (506)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 7865899998887600688149994
No 265
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=95.47 E-value=0.025 Score=35.15 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=46.6
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 8001628885698569---999997319816995213567788886531011211112210012
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~ 124 (254)
.|+|+.+|=-|.+.|+ .++.|++.|++|..+|.+++.++.+....+..+.++.+...|+.+
T Consensus 9 ~L~gKvalVTG~s~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~ 72 (259)
T PRK08213 9 DLTGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWLAADVAD 72 (259)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9999989994877689999999999869999999798899999999999549958999826899
No 266
>PRK08507 prephenate dehydrogenase; Validated
Probab=95.45 E-value=0.075 Score=32.15 Aligned_cols=83 Identities=24% Similarity=0.296 Sum_probs=53.9
Q ss_pred CCEEEECCC--HHHHHHHHHHCCC--CEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHC
Q ss_conf 628885698--5699999973198--169952135677888865310112111122100123211153013001243102
Q gi|254780872|r 68 LRILDLGCG--GGLLSEPMAQMGA--TVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEH 143 (254)
Q Consensus 68 ~~VLDiGCG--~G~~s~~la~~g~--~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleH 143 (254)
++|+=||+| +|-++.++.+.+. .|+|+|.+++.++.|.. .+. ++- ..+.+++ ...|+|+..--
T Consensus 1 M~I~IiGlGLiGgSla~alk~~~~~~~V~g~d~~~~~~~~A~~----~g~-id~-~~~~~~i----~~aDlVila~P--- 67 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKENKLISCVYGYDHNEEHEKDALD----LGL-VDE-IVEFEEI----KECDVIFLAIP--- 67 (275)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH----CCC-CCC-CCCHHHC----CCCCEEEEECC---
T ss_conf 9899990087899999999950998679999599999999998----699-861-0673123----65798999176---
Q ss_pred CCCHHHHHHHHHHHCCCCCEE
Q ss_conf 688889988887521333215
Q gi|254780872|r 144 VDNIPYFIKTCCSLLLSNGLM 164 (254)
Q Consensus 144 v~d~~~~l~~~~~~LkpgG~l 164 (254)
+.....+++++.. ++|+..+
T Consensus 68 v~~~~~~l~~l~~-l~~~~ii 87 (275)
T PRK08507 68 VDAIIEILQKLLD-IKENTTI 87 (275)
T ss_pred HHHHHHHHHHHHH-CCCCCEE
T ss_conf 9999999999860-4678889
No 267
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process.
Probab=95.42 E-value=0.0089 Score=37.86 Aligned_cols=93 Identities=23% Similarity=0.299 Sum_probs=61.1
Q ss_pred CCEEEECCCHHHHHHHHH----H-CC--CCEEEECCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCC-C-CCHHHHEE
Q ss_conf 628885698569999997----3-19--8169952135677888865310112-111122100123211-1-53013001
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMA----Q-MG--ATVTGIDPSTKNIAIAKNHANMKNI-NIDYRVSCAEEIAET-D-EKFDIILN 137 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la----~-~g--~~V~giD~S~~~i~~Ak~~a~~~~~-~i~~~~~~~~~l~~~-~-~~FD~V~~ 137 (254)
.+..|+=||-|-|+.+=| . -| .++|||++++++|..|++-|+.-|+ +++|..-|...+... . +.=|+|+.
T Consensus 239 ~~mWDLFCGVGGFgLHCAkalqekw~p~~~lTGIEI~~eAIa~A~~SA~~lGl~~~~F~aLDsa~f~~~~~e~~PeLVlV 318 (386)
T TIGR02085 239 KQMWDLFCGVGGFGLHCAKALQEKWGPDTQLTGIEIESEAIACAKQSAKILGLENLSFAALDSAKFATAQAESVPELVLV 318 (386)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 10320104654127899898764158970443134377899999999987353321045445799998623688965776
Q ss_pred CCCHHCCCCHH----HHHHHHHHHCCCCCEEEEE
Q ss_conf 24310268888----9988887521333215774
Q gi|254780872|r 138 MEVIEHVDNIP----YFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 138 ~~vleHv~d~~----~~l~~~~~~LkpgG~liis 167 (254)
.=|. +=|.+--+-+.|-=+|+=|
T Consensus 319 -------NPPRRGiG~eL~~~L~~~aP~fILYSS 345 (386)
T TIGR02085 319 -------NPPRRGIGKELCDYLSQLAPKFILYSS 345 (386)
T ss_pred -------CCCCCCCCHHHHHHHHHCCCCEEEECC
T ss_conf -------788888760689999750886266216
No 268
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.39 E-value=0.028 Score=34.77 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=51.2
Q ss_pred HHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC----------CCCC
Q ss_conf 001628885698569---999997319816995213567788886531011211112210012321----------1153
Q gi|254780872|r 65 FKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAE----------TDEK 131 (254)
Q Consensus 65 l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~----------~~~~ 131 (254)
|+|+.+|=.|.+.|+ .++.|++.|++|..+|.+++.++.+....+..+.++.+...|+.+... .-+.
T Consensus 3 L~gK~~lITGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAQCAALGGEAEVYAANVTDEEDVEATFAQIAEDFGQ 82 (253)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 89988999488778999999999987998999979999999999999965994899982479999999999999998399
Q ss_pred HHHHEEC
Q ss_conf 0130012
Q gi|254780872|r 132 FDIILNM 138 (254)
Q Consensus 132 FD~V~~~ 138 (254)
.|+++..
T Consensus 83 iD~lVnN 89 (253)
T PRK08217 83 LNGLINN 89 (253)
T ss_pred CCEEEEC
T ss_conf 8599985
No 269
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.38 E-value=0.15 Score=30.36 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=61.3
Q ss_pred HCCEEEECCC--HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCC------CCCCCCCCCCCCCCCHHHHEEC
Q ss_conf 1628885698--5699999973198169952135677888865310112111------1221001232111530130012
Q gi|254780872|r 67 GLRILDLGCG--GGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINID------YRVSCAEEIAETDEKFDIILNM 138 (254)
Q Consensus 67 g~~VLDiGCG--~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~------~~~~~~~~l~~~~~~FD~V~~~ 138 (254)
.+||+=+|+| +|+++..|++.|.+|+.++-+...++..+++. ++.+. ...... ..+...+.+|+|+..
T Consensus 2 ~MkI~IiGaGAiG~~~a~~L~~ag~dV~lv~r~~~~~~~~~~~g---~~~~~~~~~~~~~~v~~-~~~~~~~~~D~viva 77 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAG---GLTLVEQGQASLYAIPA-ETADAPEPIHRLLVA 77 (305)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCC---CEEEEECCCEEEEECCC-CCCCCCCCCCEEEEE
T ss_conf 98899988239999999999848997399994789999999789---98998689557874046-576657887789998
Q ss_pred CCHHCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 43102688889988887521333215774367
Q gi|254780872|r 139 EVIEHVDNIPYFIKTCCSLLLSNGLMFISTIN 170 (254)
Q Consensus 139 ~vleHv~d~~~~l~~~~~~LkpgG~liist~N 170 (254)
| --.+...+++.+...+.|++.++. .-|
T Consensus 78 -v--K~~~~~~a~~~l~~~l~~~t~Iv~-lQN 105 (305)
T PRK05708 78 -C--KAYDAEPAVASLAHRLAPGAELLL-LQN 105 (305)
T ss_pred -E--CCCCHHHHHHHHHHHCCCCCEEEE-ECC
T ss_conf -0--425689999998864499958999-437
No 270
>PRK08862 short chain dehydrogenase; Provisional
Probab=95.35 E-value=0.03 Score=34.62 Aligned_cols=53 Identities=23% Similarity=0.196 Sum_probs=41.1
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8001628885698569---9999973198169952135677888865310112111
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINID 116 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~ 116 (254)
.|+|+.+|=-|+|.|+ .+..|++.|++|..+|.+++.++.+.......+.++.
T Consensus 2 dlk~Kv~lITGas~GIG~aiA~~~A~~Ga~Vii~~r~~~~l~~~~~~i~~~g~~~~ 57 (227)
T PRK08862 2 DIKNSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALNDTYEQCSALTDNVY 57 (227)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEE
T ss_conf 99999999979887999999999998799999996999999999999997589748
No 271
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.32 E-value=0.055 Score=32.97 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=57.9
Q ss_pred CCEEEECCCH-H-HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCC--------C---C----CCCCCCCCCCCCCCCC
Q ss_conf 6288856985-6-9999997319816995213567788886531011--------2---1----1112210012321115
Q gi|254780872|r 68 LRILDLGCGG-G-LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKN--------I---N----IDYRVSCAEEIAETDE 130 (254)
Q Consensus 68 ~~VLDiGCG~-G-~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~--------~---~----i~~~~~~~~~l~~~~~ 130 (254)
++|-=||+|+ | ..+..++..|.+|+-.|++++.++.++.+....- + . +... ....++.. -.
T Consensus 5 k~VaViGAG~MG~giA~~~a~~G~~V~l~D~~~e~~~~~~~~i~~~l~~~~~~~~l~~~~~~~~l~~i-~~~~~~~~-~~ 82 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLESGMATINGNLARQVAKGKISEEARAAALARI-TTATTLDD-LA 82 (292)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC-CCCCCHHH-HC
T ss_conf 88999896699999999999679968999798899999999999999999970688889999998407-77689889-66
Q ss_pred CHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 301300124310268888998888752133321577
Q gi|254780872|r 131 KFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 131 ~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~lii 166 (254)
.-|+|+= .|.|.++-...+++++.++++|+-.+.=
T Consensus 83 ~aDlViE-av~E~l~iK~~lf~~l~~~~~~~~IlaS 117 (292)
T PRK07530 83 DCDLVIE-AATEDETVKRKIFAQLCPVLKPEAILAS 117 (292)
T ss_pred CCCEEEE-CCCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 4999998-8847458789899999862698848987
No 272
>PRK06194 hypothetical protein; Provisional
Probab=95.30 E-value=0.034 Score=34.24 Aligned_cols=62 Identities=13% Similarity=0.138 Sum_probs=45.7
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 88001628885698569---999997319816995213567788886531011211112210012
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~ 124 (254)
..|+|+.+|=-|+++|+ ++..+++.|++|..+|.+++.++.+.......+.++.+...|+.+
T Consensus 2 ~~l~gKvavITGassGIG~a~A~~la~~Ga~Vvl~d~~~~~l~~~~~~l~~~g~~v~~~~~DVsd 66 (301)
T PRK06194 2 KDFAGKVAVITGAASGFGREFARIGARLGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSD 66 (301)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 89899989992737799999999999879989999798899999999998459849999656899
No 273
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=95.30 E-value=0.04 Score=33.83 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=63.6
Q ss_pred HHCCEEEECCC-HHHHHHHHH-HCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHC
Q ss_conf 01628885698-569999997-3198169952135677888865310112111122100123211153013001243102
Q gi|254780872|r 66 KGLRILDLGCG-GGLLSEPMA-QMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEH 143 (254)
Q Consensus 66 ~g~~VLDiGCG-~G~~s~~la-~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleH 143 (254)
...+|+=+|.| .|.-+...| ++|++|+.+|.++..++..+.... ...... .....+.+...-..+|+|+..-.+.-
T Consensus 19 ~pa~vvViG~Gv~G~~A~~~A~~lGa~V~v~D~~~~~l~~~~~~~~-~~v~~~-~~~~~~~l~~~i~~aDvvIgavl~pg 96 (150)
T pfam01262 19 PPAKVVVIGGGVVGLGAAATAKGLGAPVTILDVRPERLEQLDSLFA-EFVETD-IFSNCEYLAEAIAEADLVIGTVLIPG 96 (150)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCC-CCCCCH-HHCCHHHHHHHHHHCCEEEEEEECCC
T ss_conf 6777999898789999999998679989997299999999998647-620016-65379999999743879997203178
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 688889988887521333215774
Q gi|254780872|r 144 VDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 144 v~d~~~~l~~~~~~LkpgG~liis 167 (254)
-.-|..+-+++.+.+|||..++--
T Consensus 97 ~~aP~lIt~~mv~~MkpGsVIVDv 120 (150)
T pfam01262 97 ARAPKLVTREMVKTMKPGSVIVDV 120 (150)
T ss_pred CCCCCEECHHHHHHHCCCCEEEEE
T ss_conf 869922079999844799399996
No 274
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.29 E-value=0.036 Score=34.15 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=58.2
Q ss_pred CCEEEECCCH-H-HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC------CCCC---------CCCCCCCCCCCCC
Q ss_conf 6288856985-6-99999973198169952135677888865310112------1111---------2210012321115
Q gi|254780872|r 68 LRILDLGCGG-G-LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI------NIDY---------RVSCAEEIAETDE 130 (254)
Q Consensus 68 ~~VLDiGCG~-G-~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~------~i~~---------~~~~~~~l~~~~~ 130 (254)
++|-=||+|+ | -.+..++..|.+|+-+|++++.++.|+.+....-. .+.- +.....++...-.
T Consensus 4 ~~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dl~~a~~ 83 (288)
T PRK08293 4 KKVTVAGAGVLGSQIAFQTAFKGFDVTIYDISEEALDAAKRRLAKLADRYVRDLHLTDEAFAAAAKNRITFTTDLAQAVK 83 (288)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHC
T ss_conf 78999897889999999999579928999898899999999999999999970599917899999807730589899846
Q ss_pred CHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 30130012431026888899888875213332157743
Q gi|254780872|r 131 KFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 131 ~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist 168 (254)
.-|+|+= .|.|.++-...+++++-++++|+-.+.-+|
T Consensus 84 ~aDlViE-av~E~l~iK~~lf~~le~~~~~~~IlaSNT 120 (288)
T PRK08293 84 DADLVIE-AVPEDPEIKGDFYEQLAEVAPEKTIFATNS 120 (288)
T ss_pred CCCEEEE-CCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 6999999-780879999999999997467766998668
No 275
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=95.27 E-value=0.26 Score=28.75 Aligned_cols=99 Identities=18% Similarity=0.129 Sum_probs=58.6
Q ss_pred HHCCEEEECCCH--HHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC------CCCCCC-----CC---CCCCCCCC
Q ss_conf 016288856985--699999973198169952135677888865310112------111122-----10---01232111
Q gi|254780872|r 66 KGLRILDLGCGG--GLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI------NIDYRV-----SC---AEEIAETD 129 (254)
Q Consensus 66 ~g~~VLDiGCG~--G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~------~i~~~~-----~~---~~~l~~~~ 129 (254)
+-++|-=||.|+ +-.+..++..|..|+-+|++++.++.++.++.+.-. .++-.. .. ..++. .-
T Consensus 312 ~i~~v~ViGaG~MG~GIA~~~a~aG~~V~l~D~~~e~l~~g~~~~~~~~~~~v~~g~~~~~~~~~~l~ri~~~~~~~-~l 390 (715)
T PRK11730 312 DVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMNEAAKLLNKQVERGRIDGLKMAGVLSTITPTLDYA-GF 390 (715)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCH-HH
T ss_conf 76279997877107999999995799579997899999999999999999998648998799999995687415402-43
Q ss_pred CCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 5301300124310268888998888752133321577
Q gi|254780872|r 130 EKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 130 ~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~lii 166 (254)
..-|+|+- .|.|-++-...+++++-.+++|+.++.-
T Consensus 391 ~~~DlVIE-AV~E~l~~K~~vf~~l~~~~~~~aIlAs 426 (715)
T PRK11730 391 KDVDVVVE-AVVENPKVKAAVLAEVEQKVREDTILAS 426 (715)
T ss_pred CCCCEEEE-ECCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 35888998-5436588999999999865587538851
No 276
>PRK00050 mraW S-adenosyl-methyltransferase MraW; Provisional
Probab=95.23 E-value=0.038 Score=33.95 Aligned_cols=72 Identities=24% Similarity=0.153 Sum_probs=50.3
Q ss_pred HHHCCEEEECCCHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC---CCCCHHHHE
Q ss_conf 00162888569856999999731---9816995213567788886531011211112210012321---115301300
Q gi|254780872|r 65 FKGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAE---TDEKFDIIL 136 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s~~la~~---g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~---~~~~FD~V~ 136 (254)
..|..++|.-.|.|-.|.++.+. +..|+|+|-.+.+++.|+......+.++.+.++...++.. ..+++|.|+
T Consensus 22 ~~~g~yvD~T~G~GGHS~~iL~~l~~~~~li~iDrD~~ai~~a~~~l~~~~~r~~~~~~nF~~l~~~l~~~~~vdgil 99 (309)
T PRK00050 22 KPDGIYVDGTFGRGGHSRAILSQLGPGGRLIAIDRDPQAIAAAKERLDPFGGRFTIVHGNFSDLAEYLAEVGKVDGIL 99 (309)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCEEE
T ss_conf 899999993889839999999727999889999898899999999865258828999277988999998638877899
No 277
>pfam00107 ADH_zinc_N Zinc-binding dehydrogenase.
Probab=95.22 E-value=0.072 Score=32.25 Aligned_cols=84 Identities=26% Similarity=0.430 Sum_probs=51.2
Q ss_pred CHHHHHHHHHH-CCC-CEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCC--CCCCHHHHEECCCHHCCCCHHHH
Q ss_conf 85699999973-198-169952135677888865310112111122100-12321--11530130012431026888899
Q gi|254780872|r 76 GGGLLSEPMAQ-MGA-TVTGIDPSTKNIAIAKNHANMKNINIDYRVSCA-EEIAE--TDEKFDIILNMEVIEHVDNIPYF 150 (254)
Q Consensus 76 G~G~~s~~la~-~g~-~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~-~~l~~--~~~~FD~V~~~~vleHv~d~~~~ 150 (254)
|-|.++..+++ +|+ +|+++|.++.-++.|++..... -+++...+. +.+.. ....+|+|+-. +. -...
T Consensus 1 giG~~~iq~ak~~Ga~~Vi~~~~~~~r~~~a~~lGa~~--~i~~~~~~~~~~i~~~~~~~g~d~vid~-----~g-~~~~ 72 (131)
T pfam00107 1 GVGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADH--VINYRDEDFVERVRELTGGRGVDVVIDC-----VG-APAT 72 (131)
T ss_pred CHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCC--CCCCCCCCHHHHHHHCCCCCCCEEEEEC-----CC-CHHH
T ss_conf 95899999999849987999969889999999759973--2353322124556540499776498866-----88-6667
Q ss_pred HHHHHHHCCCCCEEEEE
Q ss_conf 88887521333215774
Q gi|254780872|r 151 IKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 151 l~~~~~~LkpgG~liis 167 (254)
++...++++|+|.+++-
T Consensus 73 ~~~~~~~~~~~G~iv~~ 89 (131)
T pfam00107 73 LEQALELLRPGGRVVVV 89 (131)
T ss_pred HHHHHHHHCCCCEEEEE
T ss_conf 99998753599789999
No 278
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.15 E-value=0.17 Score=29.90 Aligned_cols=73 Identities=23% Similarity=0.271 Sum_probs=40.6
Q ss_pred HHHCCEEEECCC-HHHH-HHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCH
Q ss_conf 001628885698-5699-9999731981699521356778888653101121111221001232111530130012431
Q gi|254780872|r 65 FKGLRILDLGCG-GGLL-SEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVI 141 (254)
Q Consensus 65 l~g~~VLDiGCG-~G~~-s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vl 141 (254)
++|++|+=+|-| +|+- +..|.+.|++|++.|..+..-..+.. ......+.+..+...+. ....+|+|+.+--+
T Consensus 3 ~~~k~v~viGlG~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~~--~~~~~~i~~~~g~~~~~--~~~~~d~vV~SPgI 77 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKAERVAQI--GKMFDGLVFYTGRLKDA--LDNGFDILALSPGI 77 (445)
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHH--HHCCCCCEEEECCCHHH--HCCCCCEEEECCCC
T ss_conf 79998999998999999999999789919999799995318999--74369968993786365--01599999989953
No 279
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramate-alanine ligase (MurC). MurC is an essential, cytoplasmic peptidoglycan biosynthetic enzyme, catalyzes the ATP-dependent ligation of L-alanine (Ala) and UDP-N-acetylmuramic acid (UNAM) to form UDP-N-acetylmuramyl-L-alanine (UNAM-Ala). The enzyme is a nonribosomal peptide ligase which utilises ATP to form an amide bond between L-alanine and UNAM.1 Mechanistic studies on the Escherichia coli MurC enzyme using oxygen isotope analyses demonstrated that the enzyme-catalyzed reaction proceeds through an acyl phosphate UNAM intermediate prior to L-alanine addition.; GO: 0005524 ATP binding, 0008763 UDP-N-acetylmuramate-L-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=95.12 E-value=0.28 Score=28.62 Aligned_cols=140 Identities=19% Similarity=0.163 Sum_probs=80.5
Q ss_pred HH--HHHHHHHHCCCCEEEECCHHHH-HHHHHHHHHCCCCCCCCCC-CCCCCCCC-CCCCHHHHEEC-CCHHCCCCHHHH
Q ss_conf 56--9999997319816995213567-7888865310112111122-10012321-11530130012-431026888899
Q gi|254780872|r 77 GG--LLSEPMAQMGATVTGIDPSTKN-IAIAKNHANMKNINIDYRV-SCAEEIAE-TDEKFDIILNM-EVIEHVDNIPYF 150 (254)
Q Consensus 77 ~G--~~s~~la~~g~~V~giD~S~~~-i~~Ak~~a~~~~~~i~~~~-~~~~~l~~-~~~~FD~V~~~-~vleHv~d~~~~ 150 (254)
.| -+|+.|+.+|++|.|-|+++.. .. . +.+..|..|. .. .+.+++.. +.++.|+|+++ ..+ ++-..=
T Consensus 10 ~GMSglA~~L~~~G~~VsGSD~~~~~y~t-~--~L~~~Gi~I~-~g~h~~~n~~~~p~g~~~vVv~S~~Ai---~~~NpE 82 (491)
T TIGR01082 10 IGMSGLAEILLNRGYKVSGSDIAENAYTT-K--RLEALGIKIY-IGEHSAENLDDLPTGAADVVVVSAAAI---KEDNPE 82 (491)
T ss_pred HCHHHHHHHHHHCCCCEEEEECCCCCCHH-H--HHHHCCCEEC-CCCCCHHHHCCCCCCCCCEEEEEEECC---CCCCHH
T ss_conf 03448999998578908772033563158-9--9986787662-799677982036789743799864033---788888
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH-HHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEEEEEEEEECCCC
Q ss_conf 8888752133321577436766024564156554-310467899857122538899999999869838885505766777
Q gi|254780872|r 151 IKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAE-YLLQWLPKGTHQYDKFIKPTEMECFLAANKVKIIDRVGVVYNVFC 229 (254)
Q Consensus 151 l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae-~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~~~~g~~~~p~~ 229 (254)
|++..+. |+=|+. |. ..|.-+.-.. +-... -||| -|=.|-+-|..+++++|+...=+.|=.-+-..
T Consensus 83 i~~A~~~----~IPv~~---R~--~~Lael~~~~k~~iaV--aGtH--GKTTTTamia~~~~~aGLdPt~~~GG~~~~~~ 149 (491)
T TIGR01082 83 IVEAKER----GIPVIR---RA--EMLAELMRKRKESIAV--AGTH--GKTTTTAMIAVILKEAGLDPTVIVGGEVKEAG 149 (491)
T ss_pred HHHHHHC----CCCEEC---HH--HHHHHHHHHHCCEEEE--ECCC--CCHHHHHHHHHHHHHCCCCCCEEECCCCCCCC
T ss_conf 9999964----888133---78--9999998620870799--8368--72568999999998449997689866436657
Q ss_pred CEEEECC
Q ss_conf 7578647
Q gi|254780872|r 230 NKWQLSA 236 (254)
Q Consensus 230 ~~w~~~~ 236 (254)
.+-++..
T Consensus 150 ~Na~~g~ 156 (491)
T TIGR01082 150 TNARLGS 156 (491)
T ss_pred CCEEECC
T ss_conf 7435714
No 280
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=95.12 E-value=0.04 Score=33.82 Aligned_cols=63 Identities=17% Similarity=0.143 Sum_probs=46.9
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 88001628885698569---9999973198169952135677888865310112111122100123
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEI 125 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l 125 (254)
-.|+|+.+|=.|++.|+ .++.|++.|++|..+|.+++-++.+.+.....+.++.+...|+.+.
T Consensus 10 ~~L~gK~alITGgs~GIG~~ia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~ 75 (259)
T PRK06124 10 FSLAGQVALVTGSARGLGLEIARALAEAGAHVLVNGRNAARVEAAVAALRAAGGAAEALVFDISDE 75 (259)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCH
T ss_conf 099999899928674899999999998799999996988999999999996599589999517999
No 281
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.12 E-value=0.26 Score=28.80 Aligned_cols=101 Identities=11% Similarity=0.017 Sum_probs=55.6
Q ss_pred CCEEEECCCH-H-HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCC---CC-CCCCCCCCCCCCCHHHHE-ECCC
Q ss_conf 6288856985-6-99999973198169952135677888865310112111---12-210012321115301300-1243
Q gi|254780872|r 68 LRILDLGCGG-G-LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINID---YR-VSCAEEIAETDEKFDIIL-NMEV 140 (254)
Q Consensus 68 ~~VLDiGCG~-G-~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~---~~-~~~~~~l~~~~~~FD~V~-~~~v 140 (254)
++|-=||||+ | -.+..++..|.+|+..|++++..+.++.+....-..+. .. ....+.+.+...--|.+- |--|
T Consensus 8 k~VaVIGaG~MG~giAa~~a~~G~~V~l~D~~~~a~~~~~~~i~~~~~~l~~~~~~~~~~~~~l~~~~~l~~av~~aD~V 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHCCCCEE
T ss_conf 87999888788899999999479859999698889999999999999999866899631696501468889986359989
Q ss_pred HHCCC----CHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 10268----88899888875213332157743
Q gi|254780872|r 141 IEHVD----NIPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 141 leHv~----d~~~~l~~~~~~LkpgG~liist 168 (254)
+|-++ =...+++++-++++|+-.+.=+|
T Consensus 88 iEavpE~l~lK~~lf~~ld~~~~~~aIiASnT 119 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAIIASST 119 (321)
T ss_pred EECCEECHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 98776659999999999997679886785257
No 282
>KOG1269 consensus
Probab=95.07 E-value=0.0089 Score=37.87 Aligned_cols=138 Identities=20% Similarity=0.276 Sum_probs=66.6
Q ss_pred CCCHHHCCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHCCC-CCC--CCCCCCCCCCCC-CCCCHHHH
Q ss_conf 58800162888569856999999731--9816995213567788886531011-211--112210012321-11530130
Q gi|254780872|r 62 THPFKGLRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANMKN-INI--DYRVSCAEEIAE-TDEKFDII 135 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~-~~i--~~~~~~~~~l~~-~~~~FD~V 135 (254)
-+.+.+.+.||+||+.+-....+++. ..+--|+++..+.+..++....... ..+ .+..++.-..+. ....|+.+
T Consensus 176 dn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~ 255 (364)
T KOG1269 176 DNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLL 255 (364)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCEECCCCHHHHH
T ss_conf 46667489876124478699999988503677716884888876521479720110467363023212301141399887
Q ss_pred EECCCHHCCC-CHHHHHHHHHHHCCCCCEEEEECCCC------CCHHHHH---HHHHHHHHCCCCCCCCCCHHHCC
Q ss_conf 0124310268-88899888875213332157743676------6024564---15655431046789985712253
Q gi|254780872|r 136 LNMEVIEHVD-NIPYFIKTCCSLLLSNGLMFISTINR------NLKAMLL---AIIGAEYLLQWLPKGTHQYDKFI 201 (254)
Q Consensus 136 ~~~~vleHv~-d~~~~l~~~~~~LkpgG~liist~Nr------~~~s~~~---~i~~ae~il~~~P~gtH~~~~Fi 201 (254)
...+. +|+. .+...+....+.+.|.+...+..++- ...+++. .+.+.|+ ++.+|.|+-+..+++
T Consensus 256 ~~~~~-~~~~~~~dl~~~~s~~w~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~-~~~~p~gs~~~~~~~ 329 (364)
T KOG1269 256 KSFGF-EHLKLEKDLALKSSFPWNTPLTRDTITHWQDKSALFRGRVATLKPGGKVLILEY-IRGLPEGSSDFAKYI 329 (364)
T ss_pred HHCCC-HHHHHCCCCCCCCCCCCCCCCCHHHEEECCCCCHHHHHHHHCCCCCCEEEEHHH-CCCCCCCCCHHHHHH
T ss_conf 65030-342223433578866554322121200015651777767651476746871443-076776760689998
No 283
>PRK07677 short chain dehydrogenase; Provisional
Probab=95.07 E-value=0.04 Score=33.80 Aligned_cols=74 Identities=16% Similarity=0.115 Sum_probs=52.7
Q ss_pred HHHCCEEEECCCHH---HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------CCCCC
Q ss_conf 00162888569856---999999731981699521356778888653101121111221001232----------11153
Q gi|254780872|r 65 FKGLRILDLGCGGG---LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA----------ETDEK 131 (254)
Q Consensus 65 l~g~~VLDiGCG~G---~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~----------~~~~~ 131 (254)
|+|+.+|=-|.+.| ..++.|++.|++|..+|.+++.++.+....+..+.++.+.++|+.+.. ..-+.
T Consensus 1 L~gK~alVTGgs~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~ 80 (254)
T PRK07677 1 MKEKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPDDVQKMIEQIDEKFGR 80 (254)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 95298999587678999999999987999999969999999999999856990999980389999999999999998399
Q ss_pred HHHHEEC
Q ss_conf 0130012
Q gi|254780872|r 132 FDIILNM 138 (254)
Q Consensus 132 FD~V~~~ 138 (254)
.|+++..
T Consensus 81 iDiLVnN 87 (254)
T PRK07677 81 IDALINN 87 (254)
T ss_pred CCEEEEC
T ss_conf 8889975
No 284
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.99 E-value=0.045 Score=33.52 Aligned_cols=60 Identities=20% Similarity=0.155 Sum_probs=43.8
Q ss_pred HHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 001628885698569---999997319816995213567788886531011211112210012
Q gi|254780872|r 65 FKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124 (254)
Q Consensus 65 l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~ 124 (254)
|+|+.+|=.|++.|+ .+..|++.|++|..+|.+++.++.+.......+.++.+.+.|+.+
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~ 64 (258)
T PRK12429 2 LKGKTALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAKAAEAIKKAGGKAIGVAMDVTD 64 (258)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 895989994887589999999999879999999798899999999998449918999835899
No 285
>pfam07757 AdoMet_MTase Predicted AdoMet-dependent methyltransferase. Proteins in this family have been predicted to function as AdoMet-dependent methyltransferases.
Probab=94.96 E-value=0.016 Score=36.36 Aligned_cols=32 Identities=38% Similarity=0.624 Sum_probs=27.9
Q ss_pred CCEEEECCCHHHHHHHHHHCCCCEEEECCHHH
Q ss_conf 62888569856999999731981699521356
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQMGATVTGIDPSTK 99 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~ 99 (254)
....|+|||.|++..-|..-|..=.|+|.-..
T Consensus 60 ~~FvDlGCGNGlLV~IL~~EGy~G~GiD~R~R 91 (112)
T pfam07757 60 QSFVDIGCGNGLLVYILASEGYRGYGIDLRKR 91 (112)
T ss_pred CCEEEECCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 85377147722899989867887733141002
No 286
>TIGR00536 hemK_fam methyltransferase, HemK family; InterPro: IPR004556 The gene hemK from Escherichia coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase . Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity . Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both Escherichia coli and Haemophilus influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=94.92 E-value=0.02 Score=35.68 Aligned_cols=70 Identities=29% Similarity=0.443 Sum_probs=49.9
Q ss_pred CCEEEECCCHHHHHHHHHH--C--CCCEEEECCHHHHHHHHHHHHHCCCCC--CCCCCCCCCC-CCCCCC-CHHHHEE
Q ss_conf 6288856985699999973--1--981699521356778888653101121--1112210012-321115-3013001
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQ--M--GATVTGIDPSTKNIAIAKNHANMKNIN--IDYRVSCAEE-IAETDE-KFDIILN 137 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~--~--g~~V~giD~S~~~i~~Ak~~a~~~~~~--i~~~~~~~~~-l~~~~~-~FD~V~~ 137 (254)
.+++|+|||+|.++..++. . ...+.++|++..++.+++.++....++ +.+.+.+.-+ ++.... ++|+++.
T Consensus 128 ~~~~d~~~g~g~~~~~~~~~~~pc~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 205 (311)
T TIGR00536 128 LHILDLGTGSGCIALALAYEFPPCNAEVIAVDLSPDALALAEENAEKLGLEGRVELLQSDLLEPLPGLGGPKLDLLVS 205 (311)
T ss_pred CHHHHCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCCCEEEEEC
T ss_conf 011101456315666554304666622664112236788888767764320120010112444332036652236645
No 287
>PRK05876 short chain dehydrogenase; Provisional
Probab=94.90 E-value=0.047 Score=33.38 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=44.6
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 88001628885698569---99999731981699521356778888653101121111221001
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAE 123 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~ 123 (254)
..|+|+.++=-|.++|+ +++.+++.|++|+-+|.++..++.+.......+.++.....|+.
T Consensus 2 ~~~~gKvavITGaasGIG~a~A~~la~~Ga~Vvi~d~~~~~l~~~~~~l~~~g~~~~~~~~Dvt 65 (275)
T PRK05876 2 DGFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVR 65 (275)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 5989987999282669999999999987998999979889999999999826984799978889
No 288
>PRK06949 short chain dehydrogenase; Provisional
Probab=94.87 E-value=0.052 Score=33.13 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=51.2
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC----------CC
Q ss_conf 88001628885698569---999997319816995213567788886531011211112210012321----------11
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAE----------TD 129 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~----------~~ 129 (254)
-.|+|+.+|=.|++.|+ .+..|++.|++|..+|.+.+-++.+....+..+.+..+...|+.+... .-
T Consensus 5 ~~L~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~v~~~~~~~ 84 (258)
T PRK06949 5 INLEGKVALVTGASSGLGQRFAQVLSQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 87899989995857799999999999879999999698899999999999659928999826899999999999999984
Q ss_pred CCHHHHEEC
Q ss_conf 530130012
Q gi|254780872|r 130 EKFDIILNM 138 (254)
Q Consensus 130 ~~FD~V~~~ 138 (254)
+..|+++..
T Consensus 85 G~iDiLVnn 93 (258)
T PRK06949 85 GTIDILVNN 93 (258)
T ss_pred CCCCEEEEC
T ss_conf 999899989
No 289
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.85 E-value=0.051 Score=33.19 Aligned_cols=101 Identities=18% Similarity=0.242 Sum_probs=61.2
Q ss_pred HHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------CCCCC
Q ss_conf 001628885698569---99999731981699521356778888653101121111221001232----------11153
Q gi|254780872|r 65 FKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA----------ETDEK 131 (254)
Q Consensus 65 l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~----------~~~~~ 131 (254)
|+|+++|=.|++.|+ .+..|++.|++|+.+|-+++.++.++......+ ++.+...|+.+.. ...+.
T Consensus 3 l~gK~~lVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g-~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 81 (238)
T PRK05786 3 LKGKNVLIVGVSPGLGYAVAYFALREGASVYAFARSEEKLKEIKKTLAKYG-NVIYVVGDVSKLEGAREAAEKAAKVFGA 81 (238)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCC-CEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 799889992898789999999999879999999698899999999874359-7799975789999999999999998399
Q ss_pred HHHHEE-CCC-----HHCCCCH-----------HHHHHHHHHHCCCCCEEEE
Q ss_conf 013001-243-----1026888-----------8998888752133321577
Q gi|254780872|r 132 FDIILN-MEV-----IEHVDNI-----------PYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 132 FD~V~~-~~v-----leHv~d~-----------~~~l~~~~~~LkpgG~lii 166 (254)
.|+++. .+. ++.+.+. -.+.+.+.+.+++||.+++
T Consensus 82 iD~lv~naG~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~g~~ii~ 133 (238)
T PRK05786 82 LHGLVVTAGGYIEDTVEELAGLEDMLNNHLKAPLYAVNASLPLLREGSSIVL 133 (238)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 8879980575678852318999999999858999999999997421677999
No 290
>PRK07479 consensus
Probab=94.81 E-value=0.053 Score=33.08 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=43.6
Q ss_pred HHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 001628885698569---999997319816995213567788886531011211112210012
Q gi|254780872|r 65 FKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124 (254)
Q Consensus 65 l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~ 124 (254)
|+|+.+|=.|++.|+ .+..|++.|++|..+|.+++.++.+....+..+.++.+...|+.+
T Consensus 3 L~gK~alITGgs~GIG~a~a~~la~~G~~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~ 65 (252)
T PRK07479 3 LSGKVAIVTGAGSGFGEGIAKRFAREGAKVVVADLNAAAAERVASEIADAGGNAIAVAADVSR 65 (252)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 799889993887689999999999879999999798999999999998539978999925899
No 291
>TIGR01444 fkbM_fam methyltransferase, FkbM family; InterPro: IPR006342 Members of this group are characterised by two well-conserved short regions separated by a variable region in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterised as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548 ..
Probab=94.81 E-value=0.056 Score=32.92 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=39.5
Q ss_pred CEEEECCCHHHHHHHHHHCCCC----EEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 2888569856999999731981----699521356778888653101121
Q gi|254780872|r 69 RILDLGCGGGLLSEPMAQMGAT----VTGIDPSTKNIAIAKNHANMKNIN 114 (254)
Q Consensus 69 ~VLDiGCG~G~~s~~la~~g~~----V~giD~S~~~i~~Ak~~a~~~~~~ 114 (254)
.++|||+.-|.++..+++.+.. |.+++|.+.+.+..+.+...++.+
T Consensus 1 ~~~D~GAn~G~~~~~~~~~~~~~~~~v~afEP~p~~~~~l~~n~~~n~~~ 50 (142)
T TIGR01444 1 VVIDVGANIGDFSLYFARKGAEGGGRVIAFEPLPDAYEILEENVKLNGLP 50 (142)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCC
T ss_conf 97870177047999999741788731899868957999999862037878
No 292
>PRK08324 short chain dehydrogenase; Validated
Probab=94.80 E-value=0.044 Score=33.59 Aligned_cols=46 Identities=26% Similarity=0.355 Sum_probs=38.5
Q ss_pred CCCCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf 4588001628885698569---999997319816995213567788886
Q gi|254780872|r 61 DTHPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKN 106 (254)
Q Consensus 61 ~~~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~ 106 (254)
...+|+|+.+|=.|.++|+ .+..|+..|++|..+|.+++.++.+..
T Consensus 415 ~~~~L~GKVALVTGga~GIG~A~A~~fa~eGA~Vvl~D~~~~~l~~~a~ 463 (676)
T PRK08324 415 KPKPLAGKVALVTGAAGGIGLATAKRLAAEGACVVLADIDEEAAEAAAA 463 (676)
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
T ss_conf 9988899879994798816299999999879989999588899999999
No 293
>PRK07576 short chain dehydrogenase; Provisional
Probab=94.77 E-value=0.057 Score=32.86 Aligned_cols=76 Identities=14% Similarity=0.201 Sum_probs=52.0
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------CCC
Q ss_conf 88001628885698569---99999731981699521356778888653101121111221001232----------111
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA----------ETD 129 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~----------~~~ 129 (254)
-.|+|+.+|=.|.+.|+ .++.|++.|++|.-+|.+++.++.+....+..+.++.+.+.|+.+.. ..-
T Consensus 4 ~~L~gK~alVTGgs~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 83 (260)
T PRK07576 4 FRLAGKNVFVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEALGVSADVRDYAAVEAAFAAIADEF 83 (260)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 42389989995896199999999999879999999798899999999999539948999931899999999999999984
Q ss_pred CCHHHHEEC
Q ss_conf 530130012
Q gi|254780872|r 130 EKFDIILNM 138 (254)
Q Consensus 130 ~~FD~V~~~ 138 (254)
+..|++++.
T Consensus 84 G~iDiLVnn 92 (260)
T PRK07576 84 GPIDVLVSG 92 (260)
T ss_pred CCCCEEEEC
T ss_conf 999899989
No 294
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=94.70 E-value=0.062 Score=32.63 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=44.6
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 88001628885698569---99999731981699521356778888653101121111221001
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAE 123 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~ 123 (254)
..|+|+.+|=-|.+.|+ .++.|++.|++|.-.|.+++-++.+.......+.+..+.+.|+.
T Consensus 5 ~~L~gK~alVTG~~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dvt 68 (254)
T PRK08085 5 FSLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAEKAVAKLRQEGIKAHAAAFNVT 68 (254)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 2899998999685678999999999986999999969889999999999844981899982689
No 295
>PRK06227 consensus
Probab=94.67 E-value=0.053 Score=33.05 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=49.8
Q ss_pred HHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------CCCCC
Q ss_conf 001628885698569---99999731981699521356778888653101121111221001232----------11153
Q gi|254780872|r 65 FKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA----------ETDEK 131 (254)
Q Consensus 65 l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~----------~~~~~ 131 (254)
|+|+.+|=-|.+.|+ .++.|++.|++|...|.+++..+.+....+..+.++.+.+.|+.+.. ..-+.
T Consensus 3 L~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~ 82 (256)
T PRK06227 3 LSGKVAIVTGGGQGIGAAIAQTFAENGAKVVIADIDEEAGLEREEMLRSNGLDALFVKTDVSDEEDVKNMVRKTVERYGG 82 (256)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99988999586688999999999987999999969888999999999955991899981689999999999999998299
Q ss_pred HHHHEEC
Q ss_conf 0130012
Q gi|254780872|r 132 FDIILNM 138 (254)
Q Consensus 132 FD~V~~~ 138 (254)
.|+++..
T Consensus 83 iDiLVNN 89 (256)
T PRK06227 83 IDILINN 89 (256)
T ss_pred CCEEEEC
T ss_conf 9799989
No 296
>PRK06198 short chain dehydrogenase; Provisional
Probab=94.65 E-value=0.055 Score=32.97 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=46.5
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCC-EEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 8001628885698569---99999731981-69952135677888865310112111122100123
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGAT-VTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEI 125 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~-V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l 125 (254)
-|+|+.+|=-|++.|+ .++.|++.|++ |...+.+++.++.+.......+.++.+..+|+.+.
T Consensus 3 ~L~gK~alVTGas~GIG~aiA~~la~~Ga~vv~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~ 68 (268)
T PRK06198 3 RLDGKIALVTGGTQGLGAAIARLFAERGAAGLVICGRSAEKGEAKAAELEALGAKAVFVQADLAKV 68 (268)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCH
T ss_conf 889988999585778999999999987993899962988899999999995499679998268999
No 297
>PRK12939 short chain dehydrogenase; Provisional
Probab=94.65 E-value=0.066 Score=32.46 Aligned_cols=62 Identities=21% Similarity=0.177 Sum_probs=45.8
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 88001628885698569---999997319816995213567788886531011211112210012
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~ 124 (254)
..|+|+.+|=.|.+.|+ .+..|++.|++|+..|.+++-++.+....+..+.++.+..+|+.+
T Consensus 3 ~~L~~KvalVTGgs~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~ 67 (250)
T PRK12939 3 SSLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLAD 67 (250)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 99999879995836689999999999879999999698899999999999559909999924899
No 298
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=94.64 E-value=0.062 Score=32.66 Aligned_cols=74 Identities=19% Similarity=0.199 Sum_probs=51.1
Q ss_pred HHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC----------CCCC
Q ss_conf 001628885698569---999997319816995213567788886531011211112210012321----------1153
Q gi|254780872|r 65 FKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAE----------TDEK 131 (254)
Q Consensus 65 l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~----------~~~~ 131 (254)
|+|+.+|=.|.+.|+ .+..|++.|++|.-+|.+++.++......+..+.++.+.+.|+.+... .-++
T Consensus 1 L~gKvalITG~s~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~g~~~~~~~~Dv~d~~~v~~~v~~~~~~~G~ 80 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 95199999685768999999999987999999979889999999999953992899994489999999999999997599
Q ss_pred HHHHEEC
Q ss_conf 0130012
Q gi|254780872|r 132 FDIILNM 138 (254)
Q Consensus 132 FD~V~~~ 138 (254)
.|+++..
T Consensus 81 iDilvnn 87 (250)
T TIGR03206 81 VDVLVNN 87 (250)
T ss_pred CCEEEEC
T ss_conf 9799989
No 299
>PRK05867 short chain dehydrogenase; Provisional
Probab=94.63 E-value=0.057 Score=32.88 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=44.6
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 88001628885698569---999997319816995213567788886531011211112210012
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~ 124 (254)
-.|+|+.+|=-|.+.|+ .+..|++.|++|..+|.+++.++.+.......+.++.+...|+.+
T Consensus 5 f~L~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~ei~~~g~~~~~~~~Dvt~ 69 (253)
T PRK05867 5 FDLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQ 69 (253)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 38899989997956599999999999869999999798899999999998459919999836999
No 300
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=94.62 E-value=0.07 Score=32.31 Aligned_cols=63 Identities=19% Similarity=0.149 Sum_probs=46.2
Q ss_pred CCCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 588001628885698569---999997319816995213567788886531011211112210012
Q gi|254780872|r 62 THPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~ 124 (254)
...|+|+.+|=-|.+.|+ .+..|++.|++|.-.|.+++.++.+....+..+.++.+...|+.+
T Consensus 5 ~f~l~gK~alVTG~s~GIG~aiA~~la~~Ga~Vii~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~ 70 (265)
T PRK07097 5 MFSLKGKIALITGASYGIGFAIAKAYAEAGATIVFNDIKQELVDKGLAAYRELGIEAHGYVCDVTD 70 (265)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 419899989995857689999999999869999999599899999999999549917999932899
No 301
>TIGR01177 TIGR01177 conserved hypothetical protein TIGR01177; InterPro: IPR005885 This family of largely hypothetical proteins is found exclusively in the Archaea and contain a putative RNA methylase domain..
Probab=94.61 E-value=0.038 Score=33.96 Aligned_cols=107 Identities=19% Similarity=0.174 Sum_probs=78.2
Q ss_pred HHHCCEEEECCCHHHHHHHHHHCCCCEEEE-CCHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCCC--C--CCHHHHE
Q ss_conf 001628885698569999997319816995-213567788886531011211---1122100123211--1--5301300
Q gi|254780872|r 65 FKGLRILDLGCGGGLLSEPMAQMGATVTGI-DPSTKNIAIAKNHANMKNINI---DYRVSCAEEIAET--D--EKFDIIL 136 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s~~la~~g~~V~gi-D~S~~~i~~Ak~~a~~~~~~i---~~~~~~~~~l~~~--~--~~FD~V~ 136 (254)
..|..++|--||+|-+.....-.|.++.|+ |+...|+.-++.+....+..- .+...++.+++.. . +++|.+.
T Consensus 202 ~~g~~~~dp~~g~gg~~~~~gl~g~~~~g~gd~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (358)
T TIGR01177 202 KEGDRLLDPFCGTGGFLIEAGLLGAKPIGCGDLDWKLVEGARLNLEHYGIEDKVFSVKRGDAKDLPLRLPGLDESVDAIA 281 (358)
T ss_pred CCCCCEECCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCHHCCCCCCCCHHHHHHHH
T ss_conf 46751004222666033233332110002440356764252111333055431567640330011100353101122221
Q ss_pred ECCC-------HHC-CC-CHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 1243-------102-68-88899888875213332157743676
Q gi|254780872|r 137 NMEV-------IEH-VD-NIPYFIKTCCSLLLSNGLMFISTINR 171 (254)
Q Consensus 137 ~~~v-------leH-v~-d~~~~l~~~~~~LkpgG~liist~Nr 171 (254)
.-.- -.+ .. -...++..+.++++++|.+.+..+.+
T Consensus 282 ~d~p~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~ 325 (358)
T TIGR01177 282 TDPPYGRSTTAAGDGLEELYEKSLEELHEVLKGGGWLAVAVPTD 325 (358)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 25654531112210368888888888888642687179974033
No 302
>PRK08226 short chain dehydrogenase; Provisional
Probab=94.57 E-value=0.055 Score=32.97 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=48.7
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------CCCC
Q ss_conf 8001628885698569---99999731981699521356778888653101121111221001232----------1115
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA----------ETDE 130 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~----------~~~~ 130 (254)
-|+|+.+|=-|.+.|+ .+..|++.|++|..+|.+++..+.++. ....+.++.+...|+.+.. ..-+
T Consensus 3 ~L~gKvalVTGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~-~~~~g~~~~~~~~Dvsd~~~v~~~v~~~~~~~G 81 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADE-LCGRGHRCTAVVADVRDPASVAAAIKRAKEKEG 81 (263)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf 9899889994737799999999999879989999698799999999-983699179999417999999999999999839
Q ss_pred CHHHHEEC
Q ss_conf 30130012
Q gi|254780872|r 131 KFDIILNM 138 (254)
Q Consensus 131 ~FD~V~~~ 138 (254)
..|+++..
T Consensus 82 ~iDiLVNN 89 (263)
T PRK08226 82 RIDILVNN 89 (263)
T ss_pred CCCEEEEC
T ss_conf 98699989
No 303
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.57 E-value=0.065 Score=32.51 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=69.4
Q ss_pred HHCCEEEECCC-HHHHHHHHH-HCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHC
Q ss_conf 01628885698-569999997-3198169952135677888865310112111122100123211153013001243102
Q gi|254780872|r 66 KGLRILDLGCG-GGLLSEPMA-QMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEH 143 (254)
Q Consensus 66 ~g~~VLDiGCG-~G~~s~~la-~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleH 143 (254)
...+|.=+|-| .|.-+..+| .+|++|+=+|.|..-+.... ...+..+.++..+..++...-.+.|+|+.--.+--
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ld---d~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpg 243 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLD---DLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPG 243 (371)
T ss_pred CCCCEEEECCCCCCCHHHHHHHCCCCEEEEEECCHHHHHHHH---HHHCCEEEEEECCHHHHHHHHHHCCEEEEEEEECC
T ss_conf 776089987761240699997236870699952778876406---76576669997589999987431267988888458
Q ss_pred CCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 6888899888875213332157
Q gi|254780872|r 144 VDNIPYFIKTCCSLLLSNGLMF 165 (254)
Q Consensus 144 v~d~~~~l~~~~~~LkpgG~li 165 (254)
-..|..+.+++.+.+|||+.++
T Consensus 244 akaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred CCCCEEHHHHHHHHCCCCCEEE
T ss_conf 8786010699997447985899
No 304
>PRK08589 short chain dehydrogenase; Validated
Probab=94.54 E-value=0.057 Score=32.89 Aligned_cols=59 Identities=14% Similarity=0.059 Sum_probs=41.7
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 8001628885698569---99999731981699521356778888653101121111221001
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAE 123 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~ 123 (254)
-|+|+.+|=-|.+.|+ .+..|++.|++|...|.++..-+.++. .+..+.++.+...|+.
T Consensus 3 rL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~d~~~~~~~~~~~-i~~~g~~~~~~~~Dvs 64 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDK-IKSNGGKAKAYHVDIS 64 (272)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-HHHCCCCEEEEEECCC
T ss_conf 9997989997825699999999999869999998382789999999-9955994899996079
No 305
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.54 E-value=0.25 Score=28.85 Aligned_cols=91 Identities=19% Similarity=0.268 Sum_probs=56.1
Q ss_pred CCEEEECCC--HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCC-------CCCCCCCCCCCHHHHEEC
Q ss_conf 628885698--56999999731981699521356778888653101121111221-------001232111530130012
Q gi|254780872|r 68 LRILDLGCG--GGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVS-------CAEEIAETDEKFDIILNM 138 (254)
Q Consensus 68 ~~VLDiGCG--~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~-------~~~~l~~~~~~FD~V~~~ 138 (254)
+||+=+|+| +++++..|++.|.+|+-+--++. ++.- ++.++.++-..+ .+.+-....+.||+|+..
T Consensus 1 MkI~I~GaGAiG~~~a~~L~~~g~~V~lv~r~~~-~~~i----~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~viva 75 (306)
T PRK12921 1 MKIAVVGAGAVGGTFGARLLEAGRDVTFLGRSAR-AEAL----REKGLVIRSDHGDVTVPGPVITDPEEITGPFDLVILA 75 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH-HHHH----HHCCEEEEECCCEEEEECCCCCCCHHHCCCCCEEEEE
T ss_conf 9899999249999999999836998899970009-9999----9789699977976998061050805656897689997
Q ss_pred CCHHCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 4310268888998888752133321577
Q gi|254780872|r 139 EVIEHVDNIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 139 ~vleHv~d~~~~l~~~~~~LkpgG~lii 166 (254)
| --.+...+++.+..++.|++.++.
T Consensus 76 -~--Ks~~~~~a~~~l~~~~~~~t~il~ 100 (306)
T PRK12921 76 -V--KAYQLDAAIPDLKPLVGEDTVIIP 100 (306)
T ss_pred -E--CCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf -0--456779999999863399948999
No 306
>PRK06172 short chain dehydrogenase; Provisional
Probab=94.49 E-value=0.062 Score=32.64 Aligned_cols=61 Identities=16% Similarity=0.096 Sum_probs=44.4
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 8001628885698569---999997319816995213567788886531011211112210012
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~ 124 (254)
.|+|+.+|=-|.+.|+ .+..|++.|++|..+|.+++.++.+....+..+.++.+...|+.+
T Consensus 4 ~L~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~ 67 (253)
T PRK06172 4 TFSGQVALVTGGAAGIGRATAIAFAREGAKVVVADRDAAGGEETVALIREAGGEALFIACDVTR 67 (253)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 8699989993757689999999999879989999798899999999999649937999818999
No 307
>PRK06720 hypothetical protein; Provisional
Probab=94.49 E-value=0.061 Score=32.68 Aligned_cols=60 Identities=17% Similarity=0.072 Sum_probs=42.3
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 8001628885698569---99999731981699521356778888653101121111221001
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAE 123 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~ 123 (254)
.|+|+.++=-|++.|+ .+..|++.|++|.-+|.+++..+......+..+.++.+...|+.
T Consensus 13 ~L~gKvalITGa~~GIG~a~A~~la~~Ga~Vvi~d~~~~~~~~~~~~i~~~g~~a~~~~~Dvs 75 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDME 75 (169)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 629999999897548999999999986998999527636599999999974995378975889
No 308
>PRK07478 short chain dehydrogenase; Provisional
Probab=94.48 E-value=0.064 Score=32.55 Aligned_cols=75 Identities=16% Similarity=0.093 Sum_probs=50.5
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------CCCC
Q ss_conf 8001628885698569---99999731981699521356778888653101121111221001232----------1115
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA----------ETDE 130 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~----------~~~~ 130 (254)
-|+|+.+|=-|++.|+ .+..|++.|++|...|.+++.++.+.......+.++.+...|+.+.. ..-+
T Consensus 3 ~L~gKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~l~~~~~ei~~~g~~~~~~~~Dvt~~~~v~~~v~~~~~~~G 82 (254)
T PRK07478 3 LLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 88998799958876899999999998799999997988999999999996499089997689999999999999999849
Q ss_pred CHHHHEEC
Q ss_conf 30130012
Q gi|254780872|r 131 KFDIILNM 138 (254)
Q Consensus 131 ~FD~V~~~ 138 (254)
..|+++..
T Consensus 83 ~iDiLVNN 90 (254)
T PRK07478 83 GLDIAFNN 90 (254)
T ss_pred CCCEEEEC
T ss_conf 99899988
No 309
>PRK07814 short chain dehydrogenase; Provisional
Probab=94.48 E-value=0.065 Score=32.52 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=51.0
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC----------CCC
Q ss_conf 8001628885698569---999997319816995213567788886531011211112210012321----------115
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAE----------TDE 130 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~----------~~~ 130 (254)
.|+|+.+|=-|.+.|+ .++.|++.|++|.-.|.+++.++.+....+..+.++.+...|+.+... .-+
T Consensus 7 ~L~gKvalITGgs~GIG~aia~~la~~Ga~V~i~~~~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~v~~~~~~~G 86 (263)
T PRK07814 7 RLDGQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 89999899958966899999999998799899996989999999999985299289998158999999999999999829
Q ss_pred CHHHHEEC
Q ss_conf 30130012
Q gi|254780872|r 131 KFDIILNM 138 (254)
Q Consensus 131 ~FD~V~~~ 138 (254)
..|++++.
T Consensus 87 ~iDiLVnN 94 (263)
T PRK07814 87 RLDIVVNN 94 (263)
T ss_pred CCCEEEEC
T ss_conf 98899989
No 310
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=94.46 E-value=0.2 Score=29.50 Aligned_cols=89 Identities=21% Similarity=0.265 Sum_probs=54.0
Q ss_pred EEEECCC--HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCC-------CCCCCCCCCCCCHHHHEECCC
Q ss_conf 8885698--5699999973198169952135677888865310112111122-------100123211153013001243
Q gi|254780872|r 70 ILDLGCG--GGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRV-------SCAEEIAETDEKFDIILNMEV 140 (254)
Q Consensus 70 VLDiGCG--~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~-------~~~~~l~~~~~~FD~V~~~~v 140 (254)
|+=+|+| +++++..|++.|.+|+.++-++. ++.- ++.++.+.-.. ....+.....+.||+|+.. |
T Consensus 1 I~IiGaGaiG~~~a~~L~~ag~~V~lv~R~~~-~~~i----~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~-v 74 (150)
T pfam02558 1 IAILGAGAVGSLYGARLARAGHDVTLIARGRH-LEAI----RENGLRITSPGGERTVPPPVATSASEELGPADLVIVA-V 74 (150)
T ss_pred CEEECCCHHHHHHHHHHHHCCCEEEEEECCCH-HHHH----HHCCEEEEECCCCEEEECCEECCCHHHCCCCCEEEEE-E
T ss_conf 99996689999999999977992899975636-7887----7497699947983898074103865765886799997-2
Q ss_pred HHCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 10268888998888752133321577
Q gi|254780872|r 141 IEHVDNIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 141 leHv~d~~~~l~~~~~~LkpgG~lii 166 (254)
--.+....++.+...++|+..+++
T Consensus 75 --Ka~~~~~al~~l~~~l~~~t~iv~ 98 (150)
T pfam02558 75 --KAYQTAEALEDLAPLLGPNTVVLL 98 (150)
T ss_pred --CCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf --245889999998865288838999
No 311
>KOG2198 consensus
Probab=94.46 E-value=0.17 Score=29.95 Aligned_cols=103 Identities=21% Similarity=0.212 Sum_probs=58.0
Q ss_pred HHCCEEEECCCHHH----HHHHHHHCC--CCEEEECCHHHHHHHHHHHHHC-CCCCCCCCCCCCCCC---------CCCC
Q ss_conf 01628885698569----999997319--8169952135677888865310-112111122100123---------2111
Q gi|254780872|r 66 KGLRILDLGCGGGL----LSEPMAQMG--ATVTGIDPSTKNIAIAKNHANM-KNINIDYRVSCAEEI---------AETD 129 (254)
Q Consensus 66 ~g~~VLDiGCG~G~----~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~-~~~~i~~~~~~~~~l---------~~~~ 129 (254)
.|-+|||.....|- +.+.+...- ..|.+=|.+..-+...+...+. ...++.....++... ....
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~ 234 (375)
T KOG2198 155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQ 234 (375)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCCCEECCCCCCCCCCHHHH
T ss_conf 99844420138984489999997237777736753457889999999985269843334312110056410146760334
Q ss_pred CCHHHHEE----C--CCHHCCCCH-----------------HHHHHHHHHHCCCCCEEEEEC
Q ss_conf 53013001----2--431026888-----------------899888875213332157743
Q gi|254780872|r 130 EKFDIILN----M--EVIEHVDNI-----------------PYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 130 ~~FD~V~~----~--~vleHv~d~-----------------~~~l~~~~~~LkpgG~liist 168 (254)
..||-|.| + +.+++-++. ..+|....++||+||.++.||
T Consensus 235 ~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198 235 LKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred HHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 41253687145689843022802766655541135973899999999998725787799942
No 312
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=94.42 E-value=0.21 Score=29.32 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=57.7
Q ss_pred HCCEEEECCCHHHH-HHHHHHCC-----CCEEEECCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCC-C----CCCCHH
Q ss_conf 16288856985699-99997319-----81699521356778888653101121--111221001232-1----115301
Q gi|254780872|r 67 GLRILDLGCGGGLL-SEPMAQMG-----ATVTGIDPSTKNIAIAKNHANMKNIN--IDYRVSCAEEIA-E----TDEKFD 133 (254)
Q Consensus 67 g~~VLDiGCG~G~~-s~~la~~g-----~~V~giD~S~~~i~~Ak~~a~~~~~~--i~~~~~~~~~l~-~----~~~~FD 133 (254)
..+|.|-.||+|.+ .......+ ....|.+........|+.+.-..+.+ +....++...-| . ..+.||
T Consensus 187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D 266 (489)
T COG0286 187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFD 266 (489)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 65234733540379999999997515550499895668899999961166278742234334423687332346655501
Q ss_pred HHEECCCH----------HCC------------C--CH-HHHHHHHHHHCCCCCEEEEE
Q ss_conf 30012431----------026------------8--88-89988887521333215774
Q gi|254780872|r 134 IILNMEVI----------EHV------------D--NI-PYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 134 ~V~~~~vl----------eHv------------~--d~-~~~l~~~~~~LkpgG~liis 167 (254)
+|++.--. ++. + .. ..+++.+...|+|||+.-+-
T Consensus 267 ~viaNPPf~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~d~afi~h~~~~l~~~g~aaiv 325 (489)
T COG0286 267 FVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 68657995544434433100243200025778889527899999999971867705899
No 313
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=94.40 E-value=0.17 Score=29.95 Aligned_cols=92 Identities=22% Similarity=0.229 Sum_probs=57.3
Q ss_pred HHCCEEEE-CCC-HHHHHHHHHHC-CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCC--CCCCHHHHEECC
Q ss_conf 01628885-698-56999999731-981699521356778888653101121111221001-2321--115301300124
Q gi|254780872|r 66 KGLRILDL-GCG-GGLLSEPMAQM-GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAE-EIAE--TDEKFDIILNME 139 (254)
Q Consensus 66 ~g~~VLDi-GCG-~G~~s~~la~~-g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~-~l~~--~~~~FD~V~~~~ 139 (254)
.|.+||=. |.| -|.++..+++. |++|++++-|++..+.+++.. ...-++|...+.. .+.. ....+|+|+-
T Consensus 140 ~g~~vLi~gaaGgVG~~avQlAk~~Ga~Vi~t~~s~~k~e~~~~lG--A~~vi~~~~~~~~~~i~~~t~g~gvdvv~D-- 215 (327)
T PRK10754 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRALKAG--AWQVINYREENIVERVKEITGGKKVRVVYD-- 215 (327)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC--CCEEEECCCCCHHHHHHHHHCCCCCEEEEE--
T ss_conf 9999999817761126899999986999999989899999999669--999998999999999999868998369998--
Q ss_pred CHHCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 310268888998888752133321577
Q gi|254780872|r 140 VIEHVDNIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 140 vleHv~d~~~~l~~~~~~LkpgG~lii 166 (254)
.+. ...+....++|+|+|.++.
T Consensus 216 ---~vG--~~~~~~~~~~l~~~G~iv~ 237 (327)
T PRK10754 216 ---SVG--KDTWEASLDCLQRRGLMVS 237 (327)
T ss_pred ---CCC--HHHHHHHHHHHHCCCEEEE
T ss_conf ---988--8999999998634989999
No 314
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.40 E-value=0.081 Score=31.93 Aligned_cols=76 Identities=20% Similarity=0.171 Sum_probs=49.1
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------CC
Q ss_conf 88001628885698569---999997319816995213-56778888653101121111221001232----------11
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPS-TKNIAIAKNHANMKNINIDYRVSCAEEIA----------ET 128 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S-~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~----------~~ 128 (254)
..|+|+.+|=.|.+.|+ .++.|++.|++|+.+|.+ ++.++.++......+.++.+...|+.+.. ..
T Consensus 3 ~~LkgK~~lITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (250)
T PRK12825 3 GSLSGRVALVTGAARGIGRAIALRLAAAGADVIVHPPSDEAAAEETVAAVEALGRRAQAVQADVTDAAALEAAVEELVER 82 (250)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 66097889993895589999999999879989999798878999999999853994899994189999999999999997
Q ss_pred CCCHHHHEEC
Q ss_conf 1530130012
Q gi|254780872|r 129 DEKFDIILNM 138 (254)
Q Consensus 129 ~~~FD~V~~~ 138 (254)
.+..|++++.
T Consensus 83 ~g~iDilInn 92 (250)
T PRK12825 83 FGAIDILVNN 92 (250)
T ss_pred CCCCCEEEEC
T ss_conf 6999899989
No 315
>PRK09186 flagellin modification protein A; Provisional
Probab=94.39 E-value=0.078 Score=32.02 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=42.3
Q ss_pred HHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHH-CCCCCCCCCCCCCC
Q ss_conf 001628885698569---999997319816995213567788886531-01121111221001
Q gi|254780872|r 65 FKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHAN-MKNINIDYRVSCAE 123 (254)
Q Consensus 65 l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~-~~~~~i~~~~~~~~ 123 (254)
|+|+.+|=.|+++|+ .++.|++.|++|+.+|.+.+.++.+..... ..+..+.+...|+.
T Consensus 2 L~gK~~lVTGgs~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~Dvt 64 (255)
T PRK09186 2 LEGKTILITGAGGLIGSALVKAILEAGGIVIAADINKEALNKLLESLGTIEKTKLTLVELDIT 64 (255)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 895989997958689999999999879999999698899999999998705980799984689
No 316
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.35 E-value=0.066 Score=32.48 Aligned_cols=76 Identities=22% Similarity=0.302 Sum_probs=37.6
Q ss_pred CCHHHCCEEEECCC-HHH-HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCC
Q ss_conf 88001628885698-569-9999973198169952135677888865310112111122100123211153013001243
Q gi|254780872|r 63 HPFKGLRILDLGCG-GGL-LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEV 140 (254)
Q Consensus 63 ~~l~g~~VLDiGCG-~G~-~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~v 140 (254)
..++|++||=+|.| +|+ .+..|.+.|++|++.|-++..-..........+..+ ..+.- .....++.||+|+.+--
T Consensus 5 ~~~~~k~i~viGlG~sG~s~a~~L~~~G~~V~~~D~~~~~~~~~~~~l~~~gi~~--~~g~~-~~~~~~~~~d~vV~SPg 81 (450)
T PRK02472 5 TTFQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPAAQELLEEGIKV--ICGSH-PLELLDENFDLMVKNPG 81 (450)
T ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCEE--EECCC-HHHHCCCCCCEEEECCC
T ss_conf 0358998999977899999999999886989998488665798999999679989--97888-07860578879998998
Q ss_pred H
Q ss_conf 1
Q gi|254780872|r 141 I 141 (254)
Q Consensus 141 l 141 (254)
+
T Consensus 82 I 82 (450)
T PRK02472 82 I 82 (450)
T ss_pred C
T ss_conf 7
No 317
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.31 E-value=0.38 Score=27.76 Aligned_cols=94 Identities=18% Similarity=0.100 Sum_probs=57.9
Q ss_pred CCEEEECCC--HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCC----------CCCCCCCCCCCHHHH
Q ss_conf 628885698--56999999731981699521356778888653101121111221----------001232111530130
Q gi|254780872|r 68 LRILDLGCG--GGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVS----------CAEEIAETDEKFDII 135 (254)
Q Consensus 68 ~~VLDiGCG--~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~----------~~~~l~~~~~~FD~V 135 (254)
+||+=+|+| +++++..|++.|.+|+-|+-++. .+.. +..++.+.-..+ ....-+...+.||+|
T Consensus 3 mkI~IiGaGAvG~~~a~~L~~aG~~V~lv~r~~~-~~~i----~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 77 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDEI----RAHGLRLTDYRGRDVRVPPDAIAFSTDPAALATADLV 77 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECHHH-HHHH----HHCCCEEECCCCCEEEECCCEEEECCCHHHCCCCCEE
T ss_conf 7799989679999999999858998799956789-9999----9679099638997689636615614886565899989
Q ss_pred EECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 01243102688889988887521333215774367
Q gi|254780872|r 136 LNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTIN 170 (254)
Q Consensus 136 ~~~~vleHv~d~~~~l~~~~~~LkpgG~liist~N 170 (254)
+..-= -.+....++.+..++.|++.++ +.-|
T Consensus 78 iv~vK---a~~~~~a~~~l~~~l~~~t~il-~lQN 108 (341)
T PRK08229 78 LVTVK---SAATADAAAALAGHARPGAVVV-SFQN 108 (341)
T ss_pred EEEEC---CCCHHHHHHHHHHHCCCCCEEE-EEEC
T ss_conf 99707---5788999999986438996899-9504
No 318
>PRK07890 short chain dehydrogenase; Provisional
Probab=94.17 E-value=0.082 Score=31.90 Aligned_cols=74 Identities=20% Similarity=0.189 Sum_probs=49.2
Q ss_pred HHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------CCCCC
Q ss_conf 001628885698569---99999731981699521356778888653101121111221001232----------11153
Q gi|254780872|r 65 FKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA----------ETDEK 131 (254)
Q Consensus 65 l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~----------~~~~~ 131 (254)
|+||.+|=.|.+.|+ .+..|++.|++|.-.|.+++.++.+.......+.+..+...|+.+.. ..-+.
T Consensus 3 L~gK~alVTG~s~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~v~~~~~~fG~ 82 (258)
T PRK07890 3 LKDKVVVVSGVGPGLGTTLAVRAAREGADVVLAARTAERLDEVAKQIDDLGRRALAVVTDITDEAQVANLVDAALERFGR 82 (258)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 89988999685658999999999987998999979899999999999964995899981699999999999999998499
Q ss_pred HHHHEEC
Q ss_conf 0130012
Q gi|254780872|r 132 FDIILNM 138 (254)
Q Consensus 132 FD~V~~~ 138 (254)
-|+++..
T Consensus 83 iDiLVnn 89 (258)
T PRK07890 83 VDVLVNN 89 (258)
T ss_pred CCEEEEC
T ss_conf 9899986
No 319
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.16 E-value=0.14 Score=30.36 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=20.5
Q ss_pred HHHCCEEEECCC-HHH-HHHHHHHCCCCEEEECCHH
Q ss_conf 001628885698-569-9999973198169952135
Q gi|254780872|r 65 FKGLRILDLGCG-GGL-LSEPMAQMGATVTGIDPST 98 (254)
Q Consensus 65 l~g~~VLDiGCG-~G~-~s~~la~~g~~V~giD~S~ 98 (254)
+++++||=+|-| +|+ .+..|.++|+.|++.|..+
T Consensus 5 ~~~k~vlV~GlG~sG~a~a~~L~~~G~~V~~~D~~~ 40 (501)
T PRK02006 5 RQRPMVLVLGLGESGLAMARWCARHGCRLRVADTRE 40 (501)
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 689839998336889999999997898499998999
No 320
>PRK10742 putative methyltransferase; Provisional
Probab=94.13 E-value=0.06 Score=32.71 Aligned_cols=133 Identities=11% Similarity=0.176 Sum_probs=72.5
Q ss_pred CCCCHHHHHHHHHHHHHH---CCCCCCCH--------HHHH-----HCHHHHHHHHHHHHHHCCCCCCCCCCH------H
Q ss_conf 789889999999998874---68888712--------6775-----175659999999886518764445880------0
Q gi|254780872|r 9 TTKNQDAINQFSNIASEW---WEPTGKFK--------PLHQ-----INPVRIKYIQDKIMQHFQCKSDDTHPF------K 66 (254)
Q Consensus 9 ~t~~~~ei~~F~~~a~~W---wD~~g~~~--------~Lh~-----~N~~R~~~I~~~i~~~~~~~~~~~~~l------~ 66 (254)
+..+.... ..+|++| +|++..|. .|++ +.|+|++|..-.+......-.....++ +
T Consensus 9 ~~~~~~~~---~~l~~~~~l~~d~~~~~~l~~~~~~l~l~~~~~~~~g~v~vDF~~g~~~hRr~~ggG~gq~lakAvG~k 85 (250)
T PRK10742 9 TGAGDGAL---SVLAARWGLEHDEDNLMALVLTPEHLELRKRDEPKLGGIFVDFVGGAMAHRRKFGGGRGEAVAKAVGIK 85 (250)
T ss_pred CCCCCHHH---HHHHHHHCCCCCCCCCEEEEECCCCCEEECCCCCCCCCEEEECCCCHHHHHHHCCCCCCCHHHHHHCCC
T ss_conf 78870579---999999687758986558998777024451589888988998877668889862898762667875667
Q ss_pred ---HCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHH---HHHHHHCCC-------CCCCCCCCCCCCC-CCCCCCH
Q ss_conf ---1628885698569999997319816995213567788---886531011-------2111122100123-2111530
Q gi|254780872|r 67 ---GLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAI---AKNHANMKN-------INIDYRVSCAEEI-AETDEKF 132 (254)
Q Consensus 67 ---g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~---Ak~~a~~~~-------~~i~~~~~~~~~l-~~~~~~F 132 (254)
..+|||.-.|-|.-+.-||.+|++|+.|+=++-+-.. +-.++.... .++....++..+. ......+
T Consensus 86 ~~~~P~VlDATAGLGrDAfvLAslGc~VtliER~Pvv~aLL~DgL~RA~~~~e~~~~i~~Rm~L~~gds~~~L~~~~~~~ 165 (250)
T PRK10742 86 GDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRP 165 (250)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCCHHHHHHHCCCCC
T ss_conf 89998189878874688999981798699997889999999999999873815589999616786586899997358898
Q ss_pred HHHEECCCHHCC
Q ss_conf 130012431026
Q gi|254780872|r 133 DIILNMEVIEHV 144 (254)
Q Consensus 133 D~V~~~~vleHv 144 (254)
|+|+.-=++.|-
T Consensus 166 DVIYLDPMFP~r 177 (250)
T PRK10742 166 QVVYLDPMFPHK 177 (250)
T ss_pred CEEEECCCCCCC
T ss_conf 889973667765
No 321
>PRK06181 short chain dehydrogenase; Provisional
Probab=94.12 E-value=0.081 Score=31.93 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=48.0
Q ss_pred HCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------CCCCCHH
Q ss_conf 1628885698569---99999731981699521356778888653101121111221001232----------1115301
Q gi|254780872|r 67 GLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA----------ETDEKFD 133 (254)
Q Consensus 67 g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~----------~~~~~FD 133 (254)
|+.+|=-|++.|+ ++..|++.|++|..+|.+++.++.+.......+.++.+...|+.+.. ..-+..|
T Consensus 1 GKv~lITGassGIG~a~A~~la~~Ga~vvl~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~G~iD 80 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGARLVLAARNEERLASLAQELANYGAEALVVATDVSDAEACERLIEAAVAHFGGID 80 (263)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99999958101999999999998799899998899999999999995499679998079999999999999999829964
Q ss_pred HHEEC
Q ss_conf 30012
Q gi|254780872|r 134 IILNM 138 (254)
Q Consensus 134 ~V~~~ 138 (254)
+++..
T Consensus 81 iLVNN 85 (263)
T PRK06181 81 ILVNN 85 (263)
T ss_pred EEEEC
T ss_conf 89987
No 322
>PRK12829 short chain dehydrogenase; Provisional
Probab=94.11 E-value=0.084 Score=31.83 Aligned_cols=46 Identities=33% Similarity=0.489 Sum_probs=37.9
Q ss_pred CCCCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf 4588001628885698569---999997319816995213567788886
Q gi|254780872|r 61 DTHPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKN 106 (254)
Q Consensus 61 ~~~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~ 106 (254)
-...|+|+.+|=-|.+.|+ .+..|++.|++|..+|.+++.++.+..
T Consensus 5 ~m~~L~GKvalVTGgs~GIG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~ 53 (264)
T PRK12829 5 LLKPLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAA 53 (264)
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
T ss_conf 5768999979994737689999999999879989999799899999999
No 323
>PRK09242 tropinone reductase; Provisional
Probab=94.10 E-value=0.091 Score=31.62 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=49.5
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHC--CCCCCCCCCCCCCCCC----------CC
Q ss_conf 8001628885698569---9999973198169952135677888865310--1121111221001232----------11
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANM--KNINIDYRVSCAEEIA----------ET 128 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~--~~~~i~~~~~~~~~l~----------~~ 128 (254)
.|+||++|=.|+++|+ .+..|++.|++|..+|.+++.++.+...... .+.++.+.+.|+.+.. ..
T Consensus 7 ~L~gK~alITGgs~GIG~a~a~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 86 (258)
T PRK09242 7 RLDGQTALITGASKGIGLAIARELLGLGADVLIVARDADALAQARDELAEEFPERELHGLAADVSDDEDRRAILDWVEDH 86 (258)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 37999999948486899999999998799899996988999999999986447972999993079999999999999997
Q ss_pred CCCHHHHEEC
Q ss_conf 1530130012
Q gi|254780872|r 129 DEKFDIILNM 138 (254)
Q Consensus 129 ~~~FD~V~~~ 138 (254)
-++.|+.+..
T Consensus 87 ~g~iDiLVnn 96 (258)
T PRK09242 87 WDGLHILVNN 96 (258)
T ss_pred CCCCCEEEEC
T ss_conf 4999799989
No 324
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.04 E-value=0.27 Score=28.73 Aligned_cols=82 Identities=11% Similarity=0.124 Sum_probs=55.0
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCC--CCHHHHEECC----CHHCCCCHHHHHHHHHHHCCC-
Q ss_conf 1699521356778888653101121--111221001232111--5301300124----310268888998888752133-
Q gi|254780872|r 90 TVTGIDPSTKNIAIAKNHANMKNIN--IDYRVSCAEEIAETD--EKFDIILNME----VIEHVDNIPYFIKTCCSLLLS- 160 (254)
Q Consensus 90 ~V~giD~S~~~i~~Ak~~a~~~~~~--i~~~~~~~~~l~~~~--~~FD~V~~~~----vleHv~d~~~~l~~~~~~Lkp- 160 (254)
.+.|.|+++.+|+.|+.+++..|+. |.|.+.++.++..+. ...-+|+|.= =|.-.++...+.+.+-+.||.
T Consensus 262 ~i~G~D~D~~ai~~Ar~Na~~AGv~~~I~f~~~d~~~l~~p~~~~~~Gliv~NPPYGERLge~~~L~~LY~~lG~~lK~~ 341 (716)
T PRK11783 262 KFYGSDIDPRVIQAARRNARRAGVEELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKKQ 341 (716)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCEEEECCCHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 18999599899999999999819988629995678985798777898289967852201366146899999999999965
Q ss_pred -CC-EEEEECCCC
Q ss_conf -32-157743676
Q gi|254780872|r 161 -NG-LMFISTINR 171 (254)
Q Consensus 161 -gG-~liist~Nr 171 (254)
.| .+.+-|-|.
T Consensus 342 f~GW~~~ilT~~~ 354 (716)
T PRK11783 342 FGGWNAALFSSSP 354 (716)
T ss_pred CCCCEEEEEECCH
T ss_conf 8998699997888
No 325
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.02 E-value=0.55 Score=26.76 Aligned_cols=147 Identities=19% Similarity=0.193 Sum_probs=72.0
Q ss_pred CCEEEECCC--HHHHHHHHHHCCCCEEEECCHHHHHHHHHHH---HHCC--CC-C--C--CCCCCCCCCCCCCCCCHHHH
Q ss_conf 628885698--5699999973198169952135677888865---3101--12-1--1--11221001232111530130
Q gi|254780872|r 68 LRILDLGCG--GGLLSEPMAQMGATVTGIDPSTKNIAIAKNH---ANMK--NI-N--I--DYRVSCAEEIAETDEKFDII 135 (254)
Q Consensus 68 ~~VLDiGCG--~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~---a~~~--~~-~--i--~~~~~~~~~l~~~~~~FD~V 135 (254)
++|-=||+| +.-.+..++..|.+|...|+++++.+..... +.+. .+ . . .-......++...-..-|+|
T Consensus 3 kkVAVIGAGvMGsGwAa~FA~aG~~V~L~Dp~peA~~ki~~~l~~a~~al~~L~~~~l~~~grL~~~~sL~eAV~dADlV 82 (489)
T PRK07531 3 MKAACIGGGVIGGGWAARFLLNGWDVAVFDPHPEAERIIGEVLANARRALPGLTDAPLPPEGRLSFCASLAEAVAGADWI 82 (489)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHCCCCEE
T ss_conf 67999871886899999999579969999488789999999999999987753203556467768638899997479999
Q ss_pred EECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH-HHHHHHHHCCCCCCCCCCHH-------------HCC
Q ss_conf 0124310268888998888752133321577436766024564-15655431046789985712-------------253
Q gi|254780872|r 136 LNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLL-AIIGAEYLLQWLPKGTHQYD-------------KFI 201 (254)
Q Consensus 136 ~~~~vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~-~i~~ae~il~~~P~gtH~~~-------------~Fi 201 (254)
.= .|.|-++=...+++++-++++|+-.+.=+|=.- +.|-+. ..-..|+++. +|.++ ...
T Consensus 83 qE-aVPE~LdIKq~vf~eLd~~~~~~aIiASsTSgl-~~S~l~~~~~~peR~iv-----~HpfNPp~L~PLVEvV~g~~T 155 (489)
T PRK07531 83 QE-SVPERLDLKHKVLAEIEAAARPDALIGSSTSGF-KPSELQEGMTHPERIFV-----AHPFNPVYLLPLVELVGGGKT 155 (489)
T ss_pred EE-CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC-CHHHHHHHCCCCCEEEE-----ECCCCCCCCCCEEEEECCCCC
T ss_conf 98-785669999999999997679983898536658-89999865589550688-----434687344762798168888
Q ss_pred CH---HHHHHHHHHCCCEEEEEE
Q ss_conf 88---999999998698388855
Q gi|254780872|r 202 KP---TEMECFLAANKVKIIDRV 221 (254)
Q Consensus 202 ~p---~el~~~l~~~g~~~~~~~ 221 (254)
+| +....+++..|...+.++
T Consensus 156 ~~~~v~~a~~~~~~iG~~Pv~v~ 178 (489)
T PRK07531 156 SPETIERAKEILREIGMKPVHIA 178 (489)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99999999999998298436970
No 326
>PRK11524 putative methyltransferase; Provisional
Probab=93.97 E-value=0.11 Score=31.22 Aligned_cols=22 Identities=9% Similarity=0.040 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 8888998888752133321577
Q gi|254780872|r 145 DNIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 145 ~d~~~~l~~~~~~LkpgG~lii 166 (254)
.-|..+++.+-+..-+-|-+|+
T Consensus 192 ~kP~~L~e~lI~~~S~egDlVL 213 (284)
T PRK11524 192 QKPEALLKRIILASSNPGDIVL 213 (284)
T ss_pred CCHHHHHHHHHHHHCCCCCEEE
T ss_conf 7929999999997488999899
No 327
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.90 E-value=0.21 Score=29.39 Aligned_cols=98 Identities=12% Similarity=0.172 Sum_probs=53.6
Q ss_pred CCEEEECCCH-H-HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCC-CC---CCCCC----------CCCCCCCCCC
Q ss_conf 6288856985-6-999999731981699521356778888653101121-11---12210----------0123211153
Q gi|254780872|r 68 LRILDLGCGG-G-LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNIN-ID---YRVSC----------AEEIAETDEK 131 (254)
Q Consensus 68 ~~VLDiGCG~-G-~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~-i~---~~~~~----------~~~l~~~~~~ 131 (254)
++|-=||+|+ | ..+..++..|.+|+-+|++++.++.++.+....-.. ++ ..... ..++.. -..
T Consensus 3 ~kV~ViGaG~mG~~IA~~~a~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~-~~~ 81 (284)
T PRK07819 3 QRVGVVGAGQMGSGIAEVCARAGVDVLVFETTEEAATAGRNRIEKSLERAVSAGKLTERERDAALARLTFTTDLED-LAD 81 (284)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHH-HCC
T ss_conf 6799989778999999999957990899979889999999999999999987278987999999963706689999-765
Q ss_pred HHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 013001243102688889988887521333215774
Q gi|254780872|r 132 FDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 132 FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liis 167 (254)
-|+|+= .|.|.++-...+++++-+++.+-..++-|
T Consensus 82 adlViE-av~E~l~~K~~l~~~ld~~~~~p~~IlaS 116 (284)
T PRK07819 82 RQLVIE-AVVEDEAVKTEIFAELDKVVTDPDAVLAS 116 (284)
T ss_pred CCEEEE-CCCCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 999999-07387888899999999742899859996
No 328
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=93.82 E-value=0.11 Score=31.22 Aligned_cols=60 Identities=15% Similarity=0.087 Sum_probs=43.3
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 88001628885698569---9999973198169952135677888865310112111122100
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCA 122 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~ 122 (254)
..|+|+.+|=-|.+.|+ .++.|++.|++|.-.|.+++.++.+.....+.+.++.+...|+
T Consensus 7 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv 69 (255)
T PRK06113 7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDI 69 (255)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 679999899958877899999999998799999996988999999999996599089998368
No 329
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=93.81 E-value=0.22 Score=29.21 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=11.6
Q ss_pred CEEEECC--CHHHHHHHH-HHCCCCEEEEC
Q ss_conf 2888569--856999999-73198169952
Q gi|254780872|r 69 RILDLGC--GGGLLSEPM-AQMGATVTGID 95 (254)
Q Consensus 69 ~VLDiGC--G~G~~s~~l-a~~g~~V~giD 95 (254)
+|||..- |||..+..- .++|..+..|.
T Consensus 257 ~I~d~a~~kGTG~Wt~~~al~lgvp~p~i~ 286 (474)
T PTZ00142 257 KILDIAGQKGTGKWTAIEALDRGIPVPLIA 286 (474)
T ss_pred HHCCCCCCCCCHHHHHHHHHHHCCCCHHHH
T ss_conf 200555688736989999998099927999
No 330
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=93.77 E-value=0.13 Score=30.71 Aligned_cols=40 Identities=23% Similarity=0.486 Sum_probs=33.2
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHH
Q ss_conf 8001628885698569---999997319816995213567788
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAI 103 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~ 103 (254)
.|+||.+|=.|++.|+ .++.|++.|++|+++|.++...+.
T Consensus 2 ~L~gK~alVTG~s~GIG~aia~~la~~GA~V~~~d~~~~~~~~ 44 (261)
T PRK12428 2 RLDGKTIVVTGVASGIGAEVARLLRFLGARVIGLDRRPPGMTL 44 (261)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 8999889997857799999999999869999999688554561
No 331
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.68 E-value=0.14 Score=30.52 Aligned_cols=73 Identities=27% Similarity=0.322 Sum_probs=41.3
Q ss_pred HHHCCEEEECCC--HHHHHHHHHHCC-CCEEEECCHH-------------------HHHHHHHHHHHCCCCCCC--CCCC
Q ss_conf 001628885698--569999997319-8169952135-------------------677888865310112111--1221
Q gi|254780872|r 65 FKGLRILDLGCG--GGLLSEPMAQMG-ATVTGIDPST-------------------KNIAIAKNHANMKNINID--YRVS 120 (254)
Q Consensus 65 l~g~~VLDiGCG--~G~~s~~la~~g-~~V~giD~S~-------------------~~i~~Ak~~a~~~~~~i~--~~~~ 120 (254)
+++.+||=|||| ++..+..|++.| .+++-||... .=.+.|+.+.+.-+.+++ ....
T Consensus 30 L~~s~VlivG~GGlG~~~~~~La~aGvg~i~lvD~D~ve~sNLnRQ~l~~~~diG~~Kv~~a~~~l~~inp~i~i~~~~~ 109 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAAAQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESAKAALARINPHIAIETINA 109 (245)
T ss_pred HHHCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCEEEEHH
T ss_conf 97197899877777899999999859965999968867888678886459877898879999999997588752263331
Q ss_pred CC--CCCCCCCCCHHHHEE
Q ss_conf 00--123211153013001
Q gi|254780872|r 121 CA--EEIAETDEKFDIILN 137 (254)
Q Consensus 121 ~~--~~l~~~~~~FD~V~~ 137 (254)
.+ +++...-+.||+|+.
T Consensus 110 ~i~~~n~~~li~~~DlViD 128 (245)
T PRK05690 110 RLDDDELAALIAAHDLVLD 128 (245)
T ss_pred CCCHHHHHHHHHCCCEEEE
T ss_conf 4488899887507888998
No 332
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=93.65 E-value=0.47 Score=27.17 Aligned_cols=37 Identities=24% Similarity=0.436 Sum_probs=27.5
Q ss_pred CCCHHHCCEEEECCC-HHHH-HHHHHHCCCCEEEECCHH
Q ss_conf 588001628885698-5699-999973198169952135
Q gi|254780872|r 62 THPFKGLRILDLGCG-GGLL-SEPMAQMGATVTGIDPST 98 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG-~G~~-s~~la~~g~~V~giD~S~ 98 (254)
..+..|+||.=||.| .|+- +..|+++|++|+=+|-.+
T Consensus 138 ~~~~~gkkVAVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 176 (472)
T PRK12810 138 PKVKTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERDD 176 (472)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 866689989998977899999999986697589972577
No 333
>KOG4058 consensus
Probab=93.61 E-value=0.052 Score=33.11 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=55.0
Q ss_pred CCEEEECCCHHHHHHHHHHCC-CCEEEECCHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCCCHHHHEECCCHHCC
Q ss_conf 628885698569999997319-8169952135677888865310112--1111221001232111530130012431026
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQMG-ATVTGIDPSTKNIAIAKNHANMKNI--NIDYRVSCAEEIAETDEKFDIILNMEVIEHV 144 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~g-~~V~giD~S~~~i~~Ak~~a~~~~~--~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv 144 (254)
.+.+|+|+|.|....+.++.| ...+|+++.+=.+..+|.++-..++ ...|...++-.... ..|..|+.+++=.-+
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl--~dy~~vviFgaes~m 151 (199)
T KOG4058 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL--RDYRNVVIFGAESVM 151 (199)
T ss_pred CCEEECCCCCCEEEHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC--CCCCEEEEEEHHHHH
T ss_conf 817852589852446666507776774330389999999999987425331022321100445--556358996017877
Q ss_pred CCHHH
Q ss_conf 88889
Q gi|254780872|r 145 DNIPY 149 (254)
Q Consensus 145 ~d~~~ 149 (254)
+|.+.
T Consensus 152 ~dLe~ 156 (199)
T KOG4058 152 PDLED 156 (199)
T ss_pred HHHHH
T ss_conf 66689
No 334
>KOG1253 consensus
Probab=93.59 E-value=0.05 Score=33.21 Aligned_cols=101 Identities=18% Similarity=0.233 Sum_probs=66.6
Q ss_pred CHHHCCEEEECCCHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCC----CCCCCHHH
Q ss_conf 800162888569856999999731---981699521356778888653101121--111221001232----11153013
Q gi|254780872|r 64 PFKGLRILDLGCGGGLLSEPMAQM---GATVTGIDPSTKNIAIAKNHANMKNIN--IDYRVSCAEEIA----ETDEKFDI 134 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~~s~~la~~---g~~V~giD~S~~~i~~Ak~~a~~~~~~--i~~~~~~~~~l~----~~~~~FD~ 134 (254)
..++.+|||.=|++|+-+...|+. .-+|++-|.+++.++.-+.+.+.++.. ++-.+.++..+- .....||+
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHCCCCCCCCCE
T ss_conf 26750089876455178889988704245310367877788999866550673221124410277898756452124666
Q ss_pred HEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 0012431026888899888875213332157743
Q gi|254780872|r 135 ILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 135 V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist 168 (254)
|=. -=.--+..||..+.+.+..||.|.++-
T Consensus 187 IDL----DPyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253 187 IDL----DPYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred EEC----CCCCCCCHHHHHHHHHHHCCCEEEEEE
T ss_conf 723----788996277999999864087799982
No 335
>PRK07035 short chain dehydrogenase; Provisional
Probab=93.57 E-value=0.14 Score=30.37 Aligned_cols=60 Identities=15% Similarity=0.118 Sum_probs=42.0
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 88001628885698569---9999973198169952135677888865310112111122100
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCA 122 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~ 122 (254)
-.|+|+.+|=.|.+.|+ .+..|++.|++|...|.+.+.++......+..+.+..+...|+
T Consensus 4 ~~L~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv 66 (252)
T PRK07035 4 FDLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHI 66 (252)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 467899899958874999999999998799899997988999999999996499579998248
No 336
>PRK05855 short chain dehydrogenase; Validated
Probab=93.56 E-value=0.13 Score=30.60 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=42.1
Q ss_pred CCCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCC
Q ss_conf 588001628885698569---999997319816995213567788886531011211
Q gi|254780872|r 62 THPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINI 115 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i 115 (254)
...++|+.+|=-|.|.|+ ++..||+.|++|...|.+++.++.........+...
T Consensus 310 ~~rFsGKvAvVTGA~sGIGrA~A~~fA~~GA~Vvl~Dr~~~~l~eta~ei~~~G~~a 366 (582)
T PRK05855 310 RGRFGGKLVVVTGAGSGIGRATALAFAREGAEVVASDIDEAAAERTAALIRAAGAVA 366 (582)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCEE
T ss_conf 887499589995875789999999999779999996079999999999999519848
No 337
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.54 E-value=0.51 Score=26.98 Aligned_cols=92 Identities=17% Similarity=0.147 Sum_probs=56.7
Q ss_pred HHCCEEEECCC--HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCC-------CCCCCCCCCCHHHHE
Q ss_conf 01628885698--569999997319816995213567788886531011211112210-------012321115301300
Q gi|254780872|r 66 KGLRILDLGCG--GGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSC-------AEEIAETDEKFDIIL 136 (254)
Q Consensus 66 ~g~~VLDiGCG--~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~-------~~~l~~~~~~FD~V~ 136 (254)
+..||+=+|+| +++++-.|++.|.+|+.+.-+. .+. .+.+++.++-..++ +.+-+.....||+|+
T Consensus 4 ~~~kI~IiGaGAiG~~~a~~L~~aG~~V~li~r~~--~~a----i~~~Gl~i~~~~g~~~~~~~~~~~~~~~~~~~D~vi 77 (313)
T PRK06249 4 ETPRIAIIGTGAIGGFYGAMLARAGFDVHFLLRSD--YEA----VRENGLQVDSVHGDFHLPQVQAYRSAEDMPPCDWVL 77 (313)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH--HHH----HHHCCEEEEECCCCEEECCCEEECCHHHCCCCCEEE
T ss_conf 98889999914999999999996699569996755--999----986885999669828976840236977839965899
Q ss_pred ECCCHHCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 124310268888998888752133321577
Q gi|254780872|r 137 NMEVIEHVDNIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 137 ~~~vleHv~d~~~~l~~~~~~LkpgG~lii 166 (254)
.. |= -.+...++..+..++.|++.++.
T Consensus 78 v~-vK--s~~~~~~~~~l~~~~~~~t~il~ 104 (313)
T PRK06249 78 VG-LK--TTANALLAPLIPQVAAPGAKVLL 104 (313)
T ss_pred EE-CC--CCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 95-36--67789999987864489958999
No 338
>PRK07774 short chain dehydrogenase; Provisional
Probab=93.53 E-value=0.15 Score=30.34 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=43.4
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 8001628885698569---99999731981699521356778888653101121111221001
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAE 123 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~ 123 (254)
.|+|+.+|=.|.+.|+ .++.|++.|++|.-.|.+++.++.+....+..+.+..+...|+.
T Consensus 3 ~L~gK~alVTGgs~GiG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~ 65 (250)
T PRK07774 3 DFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVS 65 (250)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 779988999797688999999999986999999979889999999999855984999982589
No 339
>PRK05872 short chain dehydrogenase; Provisional
Probab=93.48 E-value=0.13 Score=30.61 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=37.7
Q ss_pred CCCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf 588001628885698569---999997319816995213567788886
Q gi|254780872|r 62 THPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKN 106 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~ 106 (254)
...|+|+.+|=-|++.|+ +++.|++.|++|..+|.+++.++.+..
T Consensus 4 M~~L~gKvalITGassGIG~aiA~~la~~Ga~Vvl~dr~~~~l~~~~~ 51 (296)
T PRK05872 4 MTSLDGKVVFVTGAARGVGAELARRLHARGAKVALVDLEEAELAALAA 51 (296)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
T ss_conf 988599879992710589999999999879989999899999999999
No 340
>PRK07063 short chain dehydrogenase; Provisional
Probab=93.42 E-value=0.13 Score=30.68 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=48.7
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCC----------CC
Q ss_conf 8001628885698569---99999731981699521356778888653-1011211112210012321----------11
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHA-NMKNINIDYRVSCAEEIAE----------TD 129 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a-~~~~~~i~~~~~~~~~l~~----------~~ 129 (254)
-|+|+.+|=-|.+.|+ .++.|++.|++|..+|.+.+.++.+.... ...+.++.+.+.|+.+... .-
T Consensus 4 rL~gKvalVTGa~~GIG~aiA~~~a~~Ga~V~i~~~~~~~~~~~~~~l~~~~g~~~~~~~~Dvt~~~~v~~~v~~~~~~~ 83 (259)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFVREGAAVALADLDAALAERAAAAIARQTGARVLALPADVTRAASVRAAVARAEAAF 83 (259)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 35998899958787899999999998799899997987899999999988509918999836899999999999999981
Q ss_pred CCHHHHEEC
Q ss_conf 530130012
Q gi|254780872|r 130 EKFDIILNM 138 (254)
Q Consensus 130 ~~FD~V~~~ 138 (254)
+..|+++..
T Consensus 84 G~iDiLVNN 92 (259)
T PRK07063 84 GPLDVLVNN 92 (259)
T ss_pred CCCCEEEEC
T ss_conf 998899989
No 341
>pfam01795 Methyltransf_5 MraW methylase family. Members of this family are probably SAM dependent methyltransferases based on Escherichia coli mraW. This family appears to be related to pfam01596.
Probab=93.38 E-value=0.17 Score=29.94 Aligned_cols=72 Identities=25% Similarity=0.182 Sum_probs=49.9
Q ss_pred HHHCCEEEECCCHHHHHHHHHH-CC--CCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-----CCCHHHHE
Q ss_conf 0016288856985699999973-19--8169952135677888865310112111122100123211-----15301300
Q gi|254780872|r 65 FKGLRILDLGCGGGLLSEPMAQ-MG--ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAET-----DEKFDIIL 136 (254)
Q Consensus 65 l~g~~VLDiGCG~G~~s~~la~-~g--~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~-----~~~FD~V~ 136 (254)
..|..++|.-.|.|-.|.++.+ .+ ..|+|+|-.+.+++.|+.+....+.++.+.++...++... -.++|.|+
T Consensus 19 ~~~g~yvD~T~G~GGHS~~iL~~~~~~~~li~iDrD~~ai~~a~~~l~~~~~r~~~~~~nF~~l~~~l~~~~~~~vdGil 98 (310)
T pfam01795 19 KPDGIYIDCTLGGGGHSEAILEQLPEEGRLIGIDRDPQAIANAKERLKPFKGRVTLIHSNFANLFAYLKELGVGKVDGIL 98 (310)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCEEE
T ss_conf 89999999588971999999984899997999989899999999853025885899925375799999875987667899
No 342
>pfam04989 CmcI Cephalosporin hydroxylase. Members of this family are about 220 amino acids long. The CmcI protein is presumed to represent the cephalosporin-7--hydroxylase. However this has not been experimentally verified.
Probab=93.34 E-value=0.18 Score=29.84 Aligned_cols=133 Identities=15% Similarity=0.226 Sum_probs=70.5
Q ss_pred HCCEEEECCCHHH----HHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC------CCHHH
Q ss_conf 1628885698569----999997319--81699521356778888653101121111221001232111------53013
Q gi|254780872|r 67 GLRILDLGCGGGL----LSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETD------EKFDI 134 (254)
Q Consensus 67 g~~VLDiGCG~G~----~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~------~~FD~ 134 (254)
...|+|+|...|- ++..|..+| .+|.|||+........ .....+|++.+++..+..... ...+-
T Consensus 33 Pd~IIE~G~a~GGS~l~~A~~l~~~~~~~~VigiDi~i~~~~~~----~i~~~~I~lieg~s~d~~~~~~v~~~~~~~~~ 108 (202)
T pfam04989 33 PDLIIETGIAHGGSALFFASMLELLGSDGKVLGIDIDIREHNRP----AIEAPRITFIQGSSTDPEIIEQVRSLAEPPHP 108 (202)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHH----HHCCCCEEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 99899961676628999999999738998799995764433543----53168769997685678899889998537985
Q ss_pred -HEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC---CCHHHCCCH-HHHHHH
Q ss_conf -001243102688889988887521333215774367660245641565543104678998---571225388-999999
Q gi|254780872|r 135 -ILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGT---HQYDKFIKP-TEMECF 209 (254)
Q Consensus 135 -V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gt---H~~~~Fi~p-~el~~~ 209 (254)
.++.+.-|.-.+...-|+.-..++++|.++++..-+ ...+|... -.|.+-=.| ..+.++
T Consensus 109 vlVilDs~Ht~~hVl~eL~~y~~lv~~GsY~IVeDTi----------------i~~~p~~~~~~r~w~~gnnP~~Av~eF 172 (202)
T pfam04989 109 VLVILDSDHTHEHVLAELRAYAPLVSEGSYLVVEDTI----------------IEDLPESPFPDRPWGKGNNPKTAVTEF 172 (202)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC----------------HHHCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 8999648865688999999875215768899995762----------------431755667888687898979999999
Q ss_pred HHHC-CCEEEE
Q ss_conf 9986-983888
Q gi|254780872|r 210 LAAN-KVKIID 219 (254)
Q Consensus 210 l~~~-g~~~~~ 219 (254)
|+++ +|++-.
T Consensus 173 L~~~~~F~iD~ 183 (202)
T pfam04989 173 LAEHPEFEIDT 183 (202)
T ss_pred HHHCCCCEECC
T ss_conf 98789938653
No 343
>PRK09291 short chain dehydrogenase; Provisional
Probab=93.28 E-value=0.19 Score=29.69 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=46.1
Q ss_pred HCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----CCCCCHHHHEEC
Q ss_conf 1628885698569---99999731981699521356778888653101121111221001232----111530130012
Q gi|254780872|r 67 GLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA----ETDEKFDIILNM 138 (254)
Q Consensus 67 g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~----~~~~~FD~V~~~ 138 (254)
|++||=-||++|+ ++..|++.|++|++++-+...++-.+..+...+..+.....++.+.. ......|++++.
T Consensus 2 gK~vLITGAssGIGraiA~~la~~G~~Vi~~~r~~~~l~~l~~~~~~~g~~~~~~~lDv~~~~~~~~~~~~~iDvLVNN 80 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHRVIAGVQIAPQVTELRAEAARRGLALRVEKLDLTDAIDRARAAEWDVDVLLNN 80 (257)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCCEEEEC
T ss_conf 9989996898589999999999879989999687899999999998529955999898899999999808999999989
No 344
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.28 E-value=0.44 Score=27.38 Aligned_cols=43 Identities=30% Similarity=0.459 Sum_probs=32.7
Q ss_pred CCCHHHCCEEEECCC-HHHH-HHHHHHCCCCEEEECCHHHHHHHH
Q ss_conf 588001628885698-5699-999973198169952135677888
Q gi|254780872|r 62 THPFKGLRILDLGCG-GGLL-SEPMAQMGATVTGIDPSTKNIAIA 104 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG-~G~~-s~~la~~g~~V~giD~S~~~i~~A 104 (254)
...++|++|+=+|-| +|+- +..|.+.|++|++.|-.+..+..+
T Consensus 4 ~~~~~gk~v~v~GlG~sG~s~a~~L~~~G~~V~~~D~~~~~~~~~ 48 (457)
T PRK01390 4 VTSFKGKTVALFGLGGSGLATARALKAGGAEVIAWDDNPDSVAKA 48 (457)
T ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCHHHHHH
T ss_conf 320289989999436999999999997899799993992066899
No 345
>PRK08339 short chain dehydrogenase; Provisional
Probab=93.27 E-value=0.16 Score=30.15 Aligned_cols=61 Identities=18% Similarity=0.315 Sum_probs=44.9
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHH-CCCCCCCCCCCCCCC
Q ss_conf 8001628885698569---999997319816995213567788886531-011211112210012
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHAN-MKNINIDYRVSCAEE 124 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~-~~~~~i~~~~~~~~~ 124 (254)
.|+|+.+|=.|.+.|+ .++.|++.|++|+.+|.+++.++.+..... ..+.++.+...|+.+
T Consensus 5 ~L~gK~alITG~s~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~~~~~~~~~~~D~~~ 69 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVIILSRNEENLKRAKEKIKSESDVEVHYIVADLTK 69 (263)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 78999899916260999999999998699999997988999999999985049857999848999
No 346
>PRK07060 short chain dehydrogenase; Provisional
Probab=93.25 E-value=0.14 Score=30.38 Aligned_cols=74 Identities=18% Similarity=0.286 Sum_probs=45.3
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCHHHHEE
Q ss_conf 8001628885698569---999997319816995213567788886531011211112-2100123211153013001
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYR-VSCAEEIAETDEKFDIILN 137 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~-~~~~~~l~~~~~~FD~V~~ 137 (254)
.|+|+.+|=-|++.|+ .++.|++.|++|..+|.+++.++..........+..+.. ...+++....-+..|++++
T Consensus 6 ~l~gK~~lVTG~~~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVn 83 (245)
T PRK07060 6 DFSGKSVLVTGASSGIGRACAVALAARGARVVAAARNQADLDRLAGETGCEPLRLDVGDDAAIRAALAGAGAFDGLVN 83 (245)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCEEEE
T ss_conf 799998999477768999999999987999999979989999999863987999807999999999996599989998
No 347
>PRK13699 putative methylase; Provisional
Probab=93.22 E-value=0.17 Score=29.98 Aligned_cols=13 Identities=0% Similarity=-0.161 Sum_probs=5.0
Q ss_pred CHHHHHHHHHHHC
Q ss_conf 8889988887521
Q gi|254780872|r 146 NIPYFIKTCCSLL 158 (254)
Q Consensus 146 d~~~~l~~~~~~L 158 (254)
.|..+++.+-+..
T Consensus 148 KPv~L~e~lI~~~ 160 (227)
T PRK13699 148 KPVTSLQPLIESF 160 (227)
T ss_pred CCHHHHHHHHHHC
T ss_conf 9299999999955
No 348
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.17 E-value=0.17 Score=29.93 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=42.4
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEE-ECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 8001628885698569---99999731981699-5213567788886531011211112210012
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTG-IDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~g-iD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~ 124 (254)
.|+|+.||=.|.+.|+ ++..|++.|++|+- .+.+++.++.........+.++.+...|+.+
T Consensus 2 ~L~gK~vlITGgs~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~ 66 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDKNEEAANELLEEIKEVGGDAIAVKADVSS 66 (247)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 98998899937845899999999998799899981799899999999999639908999835899
No 349
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=93.12 E-value=0.25 Score=28.94 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=45.4
Q ss_pred CCEEEECCCHHHHHHHHHHCCCCE-EEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCHHHHEE
Q ss_conf 628885698569999997319816-9952135677888865310112111122100123211--153013001
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQMGATV-TGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAET--DEKFDIILN 137 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~g~~V-~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~--~~~FD~V~~ 137 (254)
++|+|+=||.|.++..+.+.|+++ .++|+.+.+++..+.+... ...++|+.++... ....|+++.
T Consensus 1 l~v~dLFsG~GG~s~Gl~~aG~~~~~a~e~d~~a~~t~~~N~~~-----~~~~~Di~~~~~~~~~~~vDll~g 68 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-----KLIEGDITKIDEKDFIPDIDLLTG 68 (275)
T ss_pred CCEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCC-----CCCCCCHHHCCCCCCCCCCCEEEE
T ss_conf 95999767807899999986998999996899999999988799-----952588644653213788788986
No 350
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=93.11 E-value=0.18 Score=29.79 Aligned_cols=75 Identities=21% Similarity=0.179 Sum_probs=47.7
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------CCC
Q ss_conf 88001628885698569---99999731981699521356778888653101121111221001232----------111
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA----------ETD 129 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~----------~~~ 129 (254)
..|+|+.+|=.|.+.|+ .++.|++.|++|..+|-++...+.+.. ....+.++.+...|+.+.. ..-
T Consensus 4 ~~l~gKvalITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 82 (260)
T PRK12823 4 QRFAGKVAVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAE-LVAAGGEALALTADLETYAGAQAVMAAAVEAF 82 (260)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 88799989994886789999999999879999999694689999999-98549948999812688589999999999983
Q ss_pred CCHHHHEEC
Q ss_conf 530130012
Q gi|254780872|r 130 EKFDIILNM 138 (254)
Q Consensus 130 ~~FD~V~~~ 138 (254)
+..|+++..
T Consensus 83 G~iDiLVnn 91 (260)
T PRK12823 83 GRIDVLINN 91 (260)
T ss_pred CCCCEEEEC
T ss_conf 998799977
No 351
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.09 E-value=0.28 Score=28.61 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=34.0
Q ss_pred HCCEEEECCCHHHHHHHHHHCCCCE-EEECCHHHHHHHHHHH
Q ss_conf 1628885698569999997319816-9952135677888865
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQMGATV-TGIDPSTKNIAIAKNH 107 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~~g~~V-~giD~S~~~i~~Ak~~ 107 (254)
..+++|+=||.|.++..+...|++| .++|+.+.+++.-+.+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n 44 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKAN 44 (328)
T ss_pred CCEEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHH
T ss_conf 854998658756588999864984899874698899999985
No 352
>KOG4169 consensus
Probab=93.01 E-value=0.095 Score=31.50 Aligned_cols=71 Identities=27% Similarity=0.318 Sum_probs=49.6
Q ss_pred HHHCCEEEECCCHH---HHHHHHHHCCCCEEEECCHHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 00162888569856---999999731981699521356778-888653101121111221001232111530130
Q gi|254780872|r 65 FKGLRILDLGCGGG---LLSEPMAQMGATVTGIDPSTKNIA-IAKNHANMKNINIDYRVSCAEEIAETDEKFDII 135 (254)
Q Consensus 65 l~g~~VLDiGCG~G---~~s~~la~~g~~V~giD~S~~~i~-~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V 135 (254)
+.|++++=+|.-+| .++..|...|..+++||-|.+..+ +|+.++......+-|...|+.+.......||-|
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki 77 (261)
T KOG4169 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKI 77 (261)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCHHEEEHHHHHCHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf 137458996378636699999999767154061040147899998860399843999980120078899999999
No 353
>PRK05650 short chain dehydrogenase; Provisional
Probab=92.98 E-value=0.19 Score=29.66 Aligned_cols=55 Identities=15% Similarity=0.084 Sum_probs=39.8
Q ss_pred CEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 28885698569---99999731981699521356778888653101121111221001
Q gi|254780872|r 69 RILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAE 123 (254)
Q Consensus 69 ~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~ 123 (254)
|||=-|+++|+ ++..+++.|++|..+|.+++.++.........+.++.+...|+.
T Consensus 2 rVlITGassGIG~alA~~la~~G~~V~l~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt 59 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKELREAGGDGFYQRCDVR 59 (270)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 7999887649999999999988998999979889999999999844992899984589
No 354
>pfam11312 DUF3115 Protein of unknown function (DUF3115). This eukaryotic family of proteins has no known function.
Probab=92.98 E-value=0.82 Score=25.69 Aligned_cols=101 Identities=18% Similarity=0.268 Sum_probs=62.2
Q ss_pred HCCEEEECCCHHHHHHHHHH-------------CCCCEEEECCHHH--HHHHHHHHH---------HCCCCCCCCCCCCC
Q ss_conf 16288856985699999973-------------1981699521356--778888653---------10112111122100
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQ-------------MGATVTGIDPSTK--NIAIAKNHA---------NMKNINIDYRVSCA 122 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~-------------~g~~V~giD~S~~--~i~~Ak~~a---------~~~~~~i~~~~~~~ 122 (254)
..+||=||-|.|.-..+++. .+-+|++||+.+= .++.-.... .....++.|.+.|+
T Consensus 80 ~~~VlcIGGGAgaElvAla~~~~~~~~~~~~~~~~l~it~vDiAdWs~VV~~L~~~i~s~~~~~~~~~~~~~v~F~~~Dv 159 (288)
T pfam11312 80 TLNVLCIGGGAGAELVALAAVFRLSREHLSKSPSGLSVTLVDIADWSNVVDRLATAIRSPWVPQSIEADRFNVKFRQGDV 159 (288)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCHHCEEEEEECCC
T ss_conf 76569978882389999999987424315788888617899742569999999864358898666882030254665440
Q ss_pred CCCCCCC------CCHHHHEECCCH-----HCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 1232111------530130012431-----02688889988887521333215774
Q gi|254780872|r 123 EEIAETD------EKFDIILNMEVI-----EHVDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 123 ~~l~~~~------~~FD~V~~~~vl-----eHv~d~~~~l~~~~~~LkpgG~liis 167 (254)
-.+...+ .+-++|+.+-.+ +.++..-+||..+-..++||-.|.|.
T Consensus 160 L~~~~~~l~~l~~~~~~LiTLlFTlNELFs~s~~kTt~FLl~Lt~~~~~GslLLVv 215 (288)
T pfam11312 160 LSLSKDELIGLLGDKLDLVTLLFTLNELFTESRAKTTKFLLRLTAQCKPGSLLLIV 215 (288)
T ss_pred CCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 13784666530478861303887878987647188999999998547999589998
No 355
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=92.96 E-value=0.15 Score=30.32 Aligned_cols=60 Identities=15% Similarity=0.271 Sum_probs=40.3
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 88001628885698569---999997319816995213567788886531011211112210012
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~ 124 (254)
-.|+|+.+|=-|++.|+ .+..|++.|++|.++|.++..... ...+..+.++.+.+.|+.+
T Consensus 4 f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~--~~~~~~g~~~~~~~~Dv~~ 66 (251)
T PRK12481 4 FDLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQ--AQVEALGRKFHFITADLIQ 66 (251)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHH--HHHHHCCCCEEEEEECCCC
T ss_conf 28999989994867689999999999869999997898719999--9999759947999912799
No 356
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=92.95 E-value=0.16 Score=30.09 Aligned_cols=70 Identities=26% Similarity=0.229 Sum_probs=50.7
Q ss_pred HCCEEEECCCHHHHHHHHHH-CC--CCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-----CCCHHHHE
Q ss_conf 16288856985699999973-19--8169952135677888865310112111122100123211-----15301300
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQ-MG--ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAET-----DEKFDIIL 136 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~-~g--~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~-----~~~FD~V~ 136 (254)
+.-.+|.--|.|-.|..+-. .+ ..++|+|-.+.+|+.|+......+.++.+.++...++... -+++|.|+
T Consensus 24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~~~i~~vDGiL 101 (314)
T COG0275 24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKELGIGKVDGIL 101 (314)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCEEEEE
T ss_conf 947998237774768999985898870899768989999999985303784899957687899888763887222799
No 357
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=92.95 E-value=0.83 Score=25.66 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=69.8
Q ss_pred HCHHHHHH-HHHHHHHHCCCCCCCCCCHHHCCEEEECCCHH----HHHHHHHHCC--CCEEEECCHHHHHHH-HHHH-HH
Q ss_conf 17565999-99998865187644458800162888569856----9999997319--816995213567788-8865-31
Q gi|254780872|r 39 INPVRIKY-IQDKIMQHFQCKSDDTHPFKGLRILDLGCGGG----LLSEPMAQMG--ATVTGIDPSTKNIAI-AKNH-AN 109 (254)
Q Consensus 39 ~N~~R~~~-I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G----~~s~~la~~g--~~V~giD~S~~~i~~-Ak~~-a~ 109 (254)
..|+|.+- |.+.......... -+....|+|+|+- ++..+++..| ...+.||+|...++- |+.- +.
T Consensus 56 YYpTRtEaaIl~~~a~Eia~~~------g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~ 129 (321)
T COG4301 56 YYPTRTEAAILQARAAEIASIT------GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE 129 (321)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH------CCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 0673268999999999999760------8654897168962889999997521377403554022289999899999986
Q ss_pred CCCCCCCCCCCCCCC-CCCC-CCCHHHH-EECCCHHCC-CC-HHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 011211112210012-3211-1530130-012431026-88-8899888875213332157743
Q gi|254780872|r 110 MKNINIDYRVSCAEE-IAET-DEKFDII-LNMEVIEHV-DN-IPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 110 ~~~~~i~~~~~~~~~-l~~~-~~~FD~V-~~~~vleHv-~d-~~~~l~~~~~~LkpgG~liist 168 (254)
-.++.+.-.+++.+. +... ...=-+. +.-..|-.+ |+ ...||..+...|.||-.+.+.+
T Consensus 130 y~~l~v~~l~~~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 130 YPGLEVNALCGDYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred CCCCEEEEHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 7997676312568888751568872899983653368886789999999984289766699812
No 358
>PRK06114 short chain dehydrogenase; Provisional
Probab=92.91 E-value=0.21 Score=29.32 Aligned_cols=65 Identities=18% Similarity=0.205 Sum_probs=42.1
Q ss_pred CCCCCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCH-HHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 44588001628885698569---999997319816995213-567788886531011211112210012
Q gi|254780872|r 60 DDTHPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPS-TKNIAIAKNHANMKNINIDYRVSCAEE 124 (254)
Q Consensus 60 ~~~~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S-~~~i~~Ak~~a~~~~~~i~~~~~~~~~ 124 (254)
.....|+|+.+|=-|.+.|+ .+..|++.|++|..+|.. ++.++.+....+..+.+..+.+.|+.+
T Consensus 9 ~~lf~L~gKvalVTGa~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~ 77 (262)
T PRK06114 9 PKLFDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTS 77 (262)
T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 212498999899968478999999999998799899995897469999999999659958999816899
No 359
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=92.88 E-value=0.36 Score=27.88 Aligned_cols=87 Identities=24% Similarity=0.327 Sum_probs=59.2
Q ss_pred CHHHCCEEEECCC-HH-HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCH
Q ss_conf 8001628885698-56-999999731981699521356778888653101121111221001232111530130012431
Q gi|254780872|r 64 PFKGLRILDLGCG-GG-LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVI 141 (254)
Q Consensus 64 ~l~g~~VLDiGCG-~G-~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vl 141 (254)
.+-|.++|=+|.| .| .++..|..+|++|+..+-++..++.|. ..+.. ....+++...-..||+|+..
T Consensus 149 ti~gs~~lVlG~Gr~G~~lA~~l~~lGA~V~V~aR~~~~~a~a~----~~G~~----~v~~~~L~~~~~~~D~i~NT--- 217 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGAKVKVGARKSAHLARIT----EMGYS----PVHLSELAEEVGEADIIFNT--- 217 (296)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----HCCCE----EEEHHHHHHHHCCCCEEEEC---
T ss_conf 32476589989868999999999977996999979999999999----76985----87199999773569999989---
Q ss_pred HCCCCHHHHH-HHHHHHCCCCCEEE
Q ss_conf 0268888998-88875213332157
Q gi|254780872|r 142 EHVDNIPYFI-KTCCSLLLSNGLMF 165 (254)
Q Consensus 142 eHv~d~~~~l-~~~~~~LkpgG~li 165 (254)
+|. .++ +++.+.++|+-.++
T Consensus 218 --IPa--~Vlt~~~l~~~~~~avII 238 (296)
T PRK08306 218 --IPA--LVLTKNVLSKMPPHALII 238 (296)
T ss_pred --CCH--HHCCHHHHHCCCCCCEEE
T ss_conf --852--543999994189996999
No 360
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.84 E-value=0.2 Score=29.51 Aligned_cols=68 Identities=13% Similarity=0.204 Sum_probs=41.9
Q ss_pred HHHCCEEEECCC-HHH-HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCC
Q ss_conf 001628885698-569-9999973198169952135677888865310112111122100123211153013001243
Q gi|254780872|r 65 FKGLRILDLGCG-GGL-LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEV 140 (254)
Q Consensus 65 l~g~~VLDiGCG-~G~-~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~v 140 (254)
.+|++||=+|-| +|. .+..|.+.|++|++.|-.+..+... .+.+...-+.....+ .-..||+|+.+--
T Consensus 10 ~~Gk~V~V~GlG~sG~a~a~~L~~~G~~v~~~D~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~d~vV~SPG 79 (487)
T PRK03369 10 TPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPH----AERGVATVSSSDAVQ----QIADYALVVTSPG 79 (487)
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCHHHHHH----HHCCCCEECCCCCHH----HHCCCCEEEECCC
T ss_conf 798989999156838999999997869799998982577999----865994863762265----6467788998995
No 361
>PRK06841 short chain dehydrogenase; Provisional
Probab=92.80 E-value=0.17 Score=29.86 Aligned_cols=73 Identities=22% Similarity=0.246 Sum_probs=46.5
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------CCC
Q ss_conf 88001628885698569---99999731981699521356778888653101121111221001232----------111
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA----------ETD 129 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~----------~~~ 129 (254)
..|+|+.+|=-|.+.|+ .+..|++.|++|..+|.+++..+.+.. ..+.++.+.+.|+.+.. ..-
T Consensus 11 ~~l~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~d~~~~~~~~~~~---~~~~~~~~~~~Dvt~~~~v~~~v~~~~~~~ 87 (255)
T PRK06841 11 FDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQ---LLGGNAKGLVCDVSDSQSVEAAVAAAISAF 87 (255)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---HCCCCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 58999999997967789999999999879999999698789999998---459966999984699999999999999981
Q ss_pred CCHHHHEEC
Q ss_conf 530130012
Q gi|254780872|r 130 EKFDIILNM 138 (254)
Q Consensus 130 ~~FD~V~~~ 138 (254)
+..|+++..
T Consensus 88 g~iDiLVNN 96 (255)
T PRK06841 88 GRIDILVNS 96 (255)
T ss_pred CCCCEEEEC
T ss_conf 998799989
No 362
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.79 E-value=0.21 Score=29.40 Aligned_cols=61 Identities=15% Similarity=0.131 Sum_probs=44.9
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 8001628885698569---999997319816995213567788886531011211112210012
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~ 124 (254)
.|+|+.+|=.|.+.|+ .+..|++.|++|.-+|.+++.++.+.....+.+.++.+.+.|+.+
T Consensus 4 ~l~gKvalVTGgs~GIG~a~A~~la~~Ga~V~i~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~ 67 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTN 67 (262)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 8899989995857789999999999879999999798899999999999629939999815899
No 363
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=92.69 E-value=0.17 Score=29.90 Aligned_cols=40 Identities=23% Similarity=0.445 Sum_probs=32.8
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHH
Q ss_conf 88001628885698569---99999731981699521356778
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIA 102 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~ 102 (254)
..|+|+.+|=.|++.|+ .+..|++.|++|+++|.++..-.
T Consensus 6 ~~L~gK~alITGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~ 48 (253)
T PRK08993 6 FSLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEPTET 48 (253)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHH
T ss_conf 3999998999388768999999999987999999558774999
No 364
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=92.63 E-value=0.18 Score=29.81 Aligned_cols=42 Identities=29% Similarity=0.343 Sum_probs=35.4
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf 8001628885698569---99999731981699521356778888
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAK 105 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak 105 (254)
-|+|+.+|=.|++.|+ .++.|++.|++|..+|.+++.++.+.
T Consensus 3 ~L~gK~alVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~ 47 (263)
T PRK06200 3 WLTGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKCASLR 47 (263)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 717288999586679999999999987999999979999999999
No 365
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.58 E-value=0.28 Score=28.59 Aligned_cols=72 Identities=19% Similarity=0.334 Sum_probs=40.2
Q ss_pred HHHCCEEEECCC-HHH-HHHHHHHCCCCEEEECCHH--HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCC
Q ss_conf 001628885698-569-9999973198169952135--677888865310112111122100123211153013001243
Q gi|254780872|r 65 FKGLRILDLGCG-GGL-LSEPMAQMGATVTGIDPST--KNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEV 140 (254)
Q Consensus 65 l~g~~VLDiGCG-~G~-~s~~la~~g~~V~giD~S~--~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~v 140 (254)
++|++|+=+|-| +|. ++..|.+.|++|++.|-.. .+-+.++. .+..+ +.+..+.- ....-..+|+|+.+-.
T Consensus 12 l~~kkv~i~GlG~sG~a~a~~L~~~g~~v~~~D~~~~~~~~~~~~~-l~~~g--i~~~~g~~--~~~~~~~~d~vv~SPg 86 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEISLE-LKEKG--VNLELGEN--YLDKLTGFDVIFKTPS 86 (458)
T ss_pred HCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH-HHHCC--CEEEECCC--HHHHCCCCCEEEECCC
T ss_conf 7899699997878899999999978897999989884314899999-98579--98995784--0542378888998998
Q ss_pred H
Q ss_conf 1
Q gi|254780872|r 141 I 141 (254)
Q Consensus 141 l 141 (254)
+
T Consensus 87 I 87 (458)
T PRK01710 87 M 87 (458)
T ss_pred C
T ss_conf 7
No 366
>KOG2651 consensus
Probab=92.50 E-value=0.13 Score=30.60 Aligned_cols=38 Identities=29% Similarity=0.477 Sum_probs=31.8
Q ss_pred CCEEEECCCHHHHHHHHH-HCCCCEEEECCHHHHHHHHH
Q ss_conf 628885698569999997-31981699521356778888
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMA-QMGATVTGIDPSTKNIAIAK 105 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la-~~g~~V~giD~S~~~i~~Ak 105 (254)
..|.|+|.|-|.+|..++ ..|..|.|||-|....+.|+
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651 155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred CHHHCCCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHH
T ss_conf 114115777328999986426816999646368899999
No 367
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=92.49 E-value=0.18 Score=29.77 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=41.1
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 88001628885698569---999997319816995213567788886531011211112210012
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~ 124 (254)
..|+|+.+|=-|.+.|+ .+..|++.|++|...+.+.+. +.++...+..+.++.+.+.|+.+
T Consensus 11 f~L~gKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~~~~~~-~~~~~~~~~~g~~~~~~~~Dvs~ 74 (258)
T PRK06935 11 FSLKGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNW-DETRRLIEKEGRKVTFVQLDLTK 74 (258)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCH-HHHHHHHHHCCCCEEEEEECCCC
T ss_conf 19999989994857589999999999879999997299789-99999999669937999904899
No 368
>PRK06346 consensus
Probab=92.47 E-value=0.22 Score=29.25 Aligned_cols=74 Identities=20% Similarity=0.215 Sum_probs=49.1
Q ss_pred HHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------CCCCC
Q ss_conf 001628885698569---99999731981699521356778888653101121111221001232----------11153
Q gi|254780872|r 65 FKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA----------ETDEK 131 (254)
Q Consensus 65 l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~----------~~~~~ 131 (254)
|+|+.+|=.|.+.|+ .++.|++.|++|.-+|.+++.++.+.......+.++.+...|+.+.. ..-+.
T Consensus 3 l~gKv~lITGgs~GIG~a~a~~la~~Ga~V~i~~r~~e~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~i~~~~~~fg~ 82 (251)
T PRK06346 3 LKGKVAIVTGAASGMGKSIAELFAKEGAKVVVADLNLERAQKVVEEITSNGGTAIAVVANVTKQEDIENMVDTAVDTYGT 82 (251)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 89988999475788999999999987998999979899999999999963990899977889899999999999998299
Q ss_pred HHHHEEC
Q ss_conf 0130012
Q gi|254780872|r 132 FDIILNM 138 (254)
Q Consensus 132 FD~V~~~ 138 (254)
.|+++..
T Consensus 83 iDiLVnN 89 (251)
T PRK06346 83 LDILVNN 89 (251)
T ss_pred CCEEEEC
T ss_conf 9799989
No 369
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.46 E-value=0.95 Score=25.28 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=33.9
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHCCEEEECCC-HHHH-HHHHHHCCCCEEEECCHH
Q ss_conf 99999988651876444588001628885698-5699-999973198169952135
Q gi|254780872|r 45 KYIQDKIMQHFQCKSDDTHPFKGLRILDLGCG-GGLL-SEPMAQMGATVTGIDPST 98 (254)
Q Consensus 45 ~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG-~G~~-s~~la~~g~~V~giD~S~ 98 (254)
.||.|...............-+|+||.=||.| .|+- +..|+++|++|+=.|-.+
T Consensus 288 Rfi~D~a~~~g~~p~~~~~~~~gkKVAVIGsGPAGLaaA~~Lar~G~~VTVfE~~~ 343 (639)
T PRK12809 288 RYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99999999839988877768889989998975899999999997599069993688
No 370
>PRK06138 short chain dehydrogenase; Provisional
Probab=92.44 E-value=0.22 Score=29.25 Aligned_cols=59 Identities=17% Similarity=0.137 Sum_probs=41.4
Q ss_pred HHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 001628885698569---999997319816995213567788886531011211112210012
Q gi|254780872|r 65 FKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124 (254)
Q Consensus 65 l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~ 124 (254)
|+|+.+|=-|.+.|+ .++.|++.|++|..+|.+++.++....... .+.++.+.+.|+.+
T Consensus 3 L~gKvalVTGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~-~~~~~~~~~~Dvs~ 64 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGS 64 (252)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-CCCCEEEEEECCCC
T ss_conf 899889994746799999999999879989999688789999999983-79919999942899
No 371
>pfam01555 N6_N4_Mtase DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.
Probab=92.41 E-value=0.21 Score=29.31 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=11.3
Q ss_pred CHHHHHHHHHHCCCEEEEEEEEEECCCCCE
Q ss_conf 889999999986983888550576677775
Q gi|254780872|r 202 KPTEMECFLAANKVKIIDRVGVVYNVFCNK 231 (254)
Q Consensus 202 ~p~el~~~l~~~g~~~~~~~g~~~~p~~~~ 231 (254)
.|.+|...+-++--.. .++.++|+.++
T Consensus 166 kP~~L~~~~I~~~s~~---gd~VlDpF~GS 192 (221)
T pfam01555 166 KPEALLERLILASTNP---GDIVLDPFAGS 192 (221)
T ss_pred CCHHHHHHHHHHCCCC---CCEEEECCCCC
T ss_conf 9599999999970999---79999899982
No 372
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.40 E-value=0.15 Score=30.18 Aligned_cols=73 Identities=18% Similarity=0.339 Sum_probs=42.3
Q ss_pred CHHHCCEEEECCC-HHH-HHHHHHHCCCCEEEECCHHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCCCCCHHHHEEC-C
Q ss_conf 8001628885698-569-999997319816995213567788886-53101121111221001232111530130012-4
Q gi|254780872|r 64 PFKGLRILDLGCG-GGL-LSEPMAQMGATVTGIDPSTKNIAIAKN-HANMKNINIDYRVSCAEEIAETDEKFDIILNM-E 139 (254)
Q Consensus 64 ~l~g~~VLDiGCG-~G~-~s~~la~~g~~V~giD~S~~~i~~Ak~-~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~-~ 139 (254)
.++|++|+=+|.| +|+ .+..|.+.|++|+.+|-+......++. ..+..+ +++..+.... ...+.+|+|+.+ +
T Consensus 11 ~~~gk~v~V~GlG~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~~~~l~~~g--~~~~~g~~~~--~~~~~~d~vV~SPG 86 (481)
T PRK01438 11 DWSGLRVVVAGLGVSGFPAADALHELGASVTVVADGDDDRSRERAALLEVLG--ATVRLGDGET--TLPEGTELVVTSPG 86 (481)
T ss_pred HCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCC--CEEEECCCHH--HHHCCCCEEEECCC
T ss_conf 7189989999575889999999996799899997998744868999888549--8899688756--66248999998997
Q ss_pred C
Q ss_conf 3
Q gi|254780872|r 140 V 140 (254)
Q Consensus 140 v 140 (254)
+
T Consensus 87 I 87 (481)
T PRK01438 87 W 87 (481)
T ss_pred C
T ss_conf 8
No 373
>PRK09072 short chain dehydrogenase; Provisional
Probab=92.38 E-value=0.25 Score=28.93 Aligned_cols=73 Identities=18% Similarity=0.285 Sum_probs=46.8
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC---------CCCCCC
Q ss_conf 8001628885698569---9999973198169952135677888865310112111122100123---------211153
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEI---------AETDEK 131 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l---------~~~~~~ 131 (254)
.++|+.||=.|++.|+ ++..|++.|++|+.++-+++.++...... .+.++.+...|+.+- ....+.
T Consensus 2 ~l~~K~vlITGassGIG~a~A~~la~~G~~vil~~R~~~~L~~~~~~l--~~~~~~~~~~Dls~~~~~~~~~~~~~~~g~ 79 (262)
T PRK09072 2 DLKDKRVLLTGASGGIGEALAEALCAAGARLLLVGRNAEKLEALAARP--YPGRVRWVVADLTSEAGREAVLARAREMGG 79 (262)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH--CCCCEEEEEEECCCHHHHHHHHHHHHHHCC
T ss_conf 989988999486239999999999987998999989899999999984--589769999717999999999999998499
Q ss_pred HHHHEEC
Q ss_conf 0130012
Q gi|254780872|r 132 FDIILNM 138 (254)
Q Consensus 132 FD~V~~~ 138 (254)
.|+++..
T Consensus 80 iDiLInN 86 (262)
T PRK09072 80 INVLINN 86 (262)
T ss_pred CCEEEEC
T ss_conf 9899989
No 374
>PRK07062 short chain dehydrogenase; Provisional
Probab=92.29 E-value=0.26 Score=28.81 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=36.6
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 8001628885698569---999997319816995213567788886531
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHAN 109 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~ 109 (254)
.|+|+.+|=.|.+.|+ .++.|++.|++|+..|.+++-++.+.....
T Consensus 5 ~L~gK~alITG~s~GIG~a~a~~la~~Ga~Vvi~~r~~~~l~~~~~~l~ 53 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLR 53 (265)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 8899989995757799999999999879999999798899999999998
No 375
>PRK08628 short chain dehydrogenase; Provisional
Probab=92.26 E-value=0.21 Score=29.42 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=41.5
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 8001628885698569---99999731981699521356778888653101121111221001
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAE 123 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~ 123 (254)
.|+|+.+|=-|++.|+ .++.|++.|+.|..+|-++...+.++. ....+.++.+...|+.
T Consensus 4 ~l~gKvalVTG~s~GIG~a~a~~la~~Ga~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~Dvs 65 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVVFGRSAPDDEFAEE-LRALQPRAEFVQVDLQ 65 (258)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH-HHHCCCCEEEEEEECC
T ss_conf 9799989992777789999999999879989998088023999999-9953997899995279
No 376
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.24 E-value=0.25 Score=28.85 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=40.8
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 8001628885698569---99999731981699521356778888653101121111221001
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAE 123 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~ 123 (254)
.|+|+.+|=.|.+.|+ .++.|++.|++|..+|.+++.++.+.... .+.++.+.+.|+.
T Consensus 3 ~l~gK~alITGgs~GIG~aia~~la~~G~~V~i~~r~~~~~~~~~~~~--~~~~~~~~~~Dv~ 63 (250)
T PRK07231 3 RLEGKVAIVTGAGSGFGEGIARRFAAEGARVVVTDRNQEAAERVAAEI--RGGRAIAVAADVS 63 (250)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH--CCCCEEEEEEECC
T ss_conf 769988999388868999999999987999999979889999999984--4996799993079
No 377
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.19 E-value=0.99 Score=25.18 Aligned_cols=54 Identities=22% Similarity=0.304 Sum_probs=32.9
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHCCEEEECCC-HHHH-HHHHHHCCCCEEEECCHH
Q ss_conf 99999988651876444588001628885698-5699-999973198169952135
Q gi|254780872|r 45 KYIQDKIMQHFQCKSDDTHPFKGLRILDLGCG-GGLL-SEPMAQMGATVTGIDPST 98 (254)
Q Consensus 45 ~~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG-~G~~-s~~la~~g~~V~giD~S~ 98 (254)
.||.|...............-.|++|.=||.| .|+- +..|+++|++|+=.|-.+
T Consensus 305 RfiaD~a~~~g~~p~~~~~~~tGKkVAIIGsGPAGLsaA~~Lar~G~~VTVFE~~~ 360 (654)
T PRK12769 305 RYISDQALAKGWRPDLSHVTKSDKRVAIIGAGPAGLACADVLTRNGVAVTVYDRHP 360 (654)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 99988999719988888767789989998977899999999997697579952577
No 378
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=92.18 E-value=0.85 Score=25.59 Aligned_cols=39 Identities=26% Similarity=0.431 Sum_probs=29.3
Q ss_pred CCCCHHHCCEEEECCC-HHH-HHHHHHHCCCCEEEECCHHH
Q ss_conf 4588001628885698-569-99999731981699521356
Q gi|254780872|r 61 DTHPFKGLRILDLGCG-GGL-LSEPMAQMGATVTGIDPSTK 99 (254)
Q Consensus 61 ~~~~l~g~~VLDiGCG-~G~-~s~~la~~g~~V~giD~S~~ 99 (254)
...|-.|++|.=||.| .|+ .+..|+++|++|+-.|-.+.
T Consensus 187 ~~~~~tGKkVAIIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~ 227 (652)
T PRK12814 187 ERAPKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ 227 (652)
T ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 88788899799968378999999999977990699815888
No 379
>KOG1099 consensus
Probab=92.17 E-value=0.24 Score=28.95 Aligned_cols=129 Identities=22% Similarity=0.362 Sum_probs=70.7
Q ss_pred CCCCCCHHHHHHHHHHHHH-HCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHH-CCEEEECCCHHHHHHHH
Q ss_conf 7678988999999999887-468888712677517565999999988651876444588001-62888569856999999
Q gi|254780872|r 7 NYTTKNQDAINQFSNIASE-WWEPTGKFKPLHQINPVRIKYIQDKIMQHFQCKSDDTHPFKG-LRILDLGCGGGLLSEPM 84 (254)
Q Consensus 7 ~~~t~~~~ei~~F~~~a~~-WwD~~g~~~~Lh~~N~~R~~~I~~~i~~~~~~~~~~~~~l~g-~~VLDiGCG~G~~s~~l 84 (254)
-.++-|+.+| |=++|++ =|-.++.|+-|| +.+.|.. ++| +++.|+....|-+|..|
T Consensus 2 GktskDKRDi--YYRlAKe~gwRARSAFKLlq-------------ideef~i-------~~gv~rvVDLCAAPGSWSQvl 59 (294)
T KOG1099 2 GKTSKDKRDI--YYRLAKENGWRARSAFKLLQ-------------IDEEFQI-------FEGVKRVVDLCAAPGSWSQVL 59 (294)
T ss_pred CCCCCHHHHH--HHHHHHHCCCHHHHHHHHHH-------------HHHHHHH-------HHHHHHHHHHHCCCCCHHHHH
T ss_conf 9764014679--99988760615776777750-------------1366627-------760367743530898399999
Q ss_pred HHC--------CC---CEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCC------CCCC--CCCCCHHHHEECCC-----
Q ss_conf 731--------98---169952135677888865310112111122100------1232--11153013001243-----
Q gi|254780872|r 85 AQM--------GA---TVTGIDPSTKNIAIAKNHANMKNINIDYRVSCA------EEIA--ETDEKFDIILNMEV----- 140 (254)
Q Consensus 85 a~~--------g~---~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~------~~l~--~~~~~FD~V~~~~v----- 140 (254)
++. +. .+++||+.+- . ...++ ...++++ +.+. +..++-|+|+|-+.
T Consensus 60 SrkL~~~~~~~~~~~~kIVaVDLQ~M-a-------PI~GV--~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTG 129 (294)
T KOG1099 60 SRKLYKPLPSSGERDKKIVAVDLQPM-A-------PIEGV--IQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTG 129 (294)
T ss_pred HHHHHCCCCCCCHHHCCEEEEECCCC-C-------CCCCE--EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCC
T ss_conf 99973248874201162799855657-7-------66762--78504557776899999985799766788479987445
Q ss_pred HHCCCC------HHHHHHHHHHHCCCCCEEEEE
Q ss_conf 102688------889988887521333215774
Q gi|254780872|r 141 IEHVDN------IPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 141 leHv~d------~~~~l~~~~~~LkpgG~liis 167 (254)
||-+++ ...+|+-...+|||||.++--
T Consensus 130 lHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099 130 LHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHEECCCCEEEHH
T ss_conf 320889999999999987774201478752554
No 380
>PRK06500 short chain dehydrogenase; Provisional
Probab=92.02 E-value=0.25 Score=28.92 Aligned_cols=99 Identities=16% Similarity=0.200 Sum_probs=58.3
Q ss_pred HHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------CCCCC
Q ss_conf 001628885698569---99999731981699521356778888653101121111221001232----------11153
Q gi|254780872|r 65 FKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA----------ETDEK 131 (254)
Q Consensus 65 l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~----------~~~~~ 131 (254)
|+|+.+|=.|.+.|+ .++.|++.|++|.-+|.+++.++.++... +.+..+.+.|+.+.. ..-++
T Consensus 4 l~gK~~lITGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l---~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 80 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFAAEGARVAITGRDAATLEAARAEL---GEDALVIRNDAGSVAAQRALAQALAEAGGR 80 (249)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH---CCCEEEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 89988999376878999999999987999999969989999999985---897599995179999999999999997699
Q ss_pred HHHHEECCCHHC---C----------------CCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 013001243102---6----------------8888998888752133321577
Q gi|254780872|r 132 FDIILNMEVIEH---V----------------DNIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 132 FD~V~~~~vleH---v----------------~d~~~~l~~~~~~LkpgG~lii 166 (254)
.|+.++..-... + .-+-.+.+.+...++.+|.+++
T Consensus 81 iDiLvnnAG~~~~~~~~~~~~e~w~~~~~vNl~~~f~~~~~~~p~m~~~g~iI~ 134 (249)
T PRK06500 81 LDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLNNPASIVL 134 (249)
T ss_pred CCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 989998998789999166999999999998645699999999998622981899
No 381
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=91.94 E-value=1.1 Score=24.87 Aligned_cols=53 Identities=23% Similarity=0.332 Sum_probs=34.4
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHCCEEEECCC-HHH-HHHHHHHCCCCEEEECCHH
Q ss_conf 9999988651876444588001628885698-569-9999973198169952135
Q gi|254780872|r 46 YIQDKIMQHFQCKSDDTHPFKGLRILDLGCG-GGL-LSEPMAQMGATVTGIDPST 98 (254)
Q Consensus 46 ~I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG-~G~-~s~~la~~g~~V~giD~S~ 98 (254)
|+.|..............+-.|++|.=||+| .|+ .+..|+++|++|+=.|-.+
T Consensus 418 f~aD~~~~~~~~~~~~~~~~~GkKVAVIGsGPAGLsaA~~La~~G~~VtVFE~~~ 472 (760)
T PRK12778 418 FAADWERESGQISVPEVAEKNGIKVAVIGSGPAGLSFAGDMAKYGYDVTVFEALH 472 (760)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9999999739988877766689989998977899999999997799069980588
No 382
>KOG2352 consensus
Probab=91.91 E-value=0.16 Score=30.11 Aligned_cols=105 Identities=17% Similarity=0.259 Sum_probs=65.1
Q ss_pred HHCCEEEECCCHHHHHHHHH-HCC-CCEEEECCHHHHHHHHHHHHHCCC---CC------CCCCCCCCCCCCCCCCCHHH
Q ss_conf 01628885698569999997-319-816995213567788886531011---21------11122100123211153013
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMA-QMG-ATVTGIDPSTKNIAIAKNHANMKN---IN------IDYRVSCAEEIAETDEKFDI 134 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la-~~g-~~V~giD~S~~~i~~Ak~~a~~~~---~~------i~~~~~~~~~l~~~~~~FD~ 134 (254)
.+.++|=+|=|+|.+...+. .++ +.+++|.+.+.|+++|+++..... .+ +.|....+.. ...+..||+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~-~~~~~~~dv 373 (482)
T KOG2352 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKS-QQEDICPDV 373 (482)
T ss_pred CCCCEEEEECCCCCCCCCEEEECCCCCEEEEEECHHHHHCCHHHHCHHHHHHHHHHHHHCHHHHHHHHHC-CCCCCCCCE
T ss_conf 6675799832877540020020573411599978168405576525356552200373035999998615-644668757
Q ss_pred HEE----CCCHHCCCCH------HHHHHHHHHHCCCCCEEEEE--CCCCC
Q ss_conf 001----2431026888------89988887521333215774--36766
Q gi|254780872|r 135 ILN----MEVIEHVDNI------PYFIKTCCSLLLSNGLMFIS--TINRN 172 (254)
Q Consensus 135 V~~----~~vleHv~d~------~~~l~~~~~~LkpgG~liis--t~Nr~ 172 (254)
+.. .. .+-+.-| ..++..++..|.|-|.+++- |.|.+
T Consensus 374 l~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~ 422 (482)
T KOG2352 374 LMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSS 422 (482)
T ss_pred EEEECCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
T ss_conf 999778998-5667289647878999887761068663489987538842
No 383
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=91.85 E-value=0.34 Score=28.09 Aligned_cols=142 Identities=20% Similarity=0.214 Sum_probs=71.1
Q ss_pred HHCCEEEECCC-HH-HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHC
Q ss_conf 01628885698-56-99999973198169952135677888865310112111122100123211153013001243102
Q gi|254780872|r 66 KGLRILDLGCG-GG-LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEH 143 (254)
Q Consensus 66 ~g~~VLDiGCG-~G-~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleH 143 (254)
.|++|.=+||| -| +++.+..++|.+|..+|++++.-. .+-+.. ....+ ..|.+.+...-+.-|+|+. =+||
T Consensus 6 p~~tIGIlGgGQLgrMla~aA~~lG~~v~vldp~~~~PA--~~va~~-~~~~~--~~D~~al~~fa~~~DviT~--E~En 78 (377)
T PRK06019 6 PGKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDADCPA--AQVADR-VIVAD--YDDVAALRELAEQCDVITY--EFEN 78 (377)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCH--HHHCCE-EEECC--CCCHHHHHHHHHCCCEEEE--CCCC
T ss_conf 999999987868999999999978998999848984984--783784-89868--8989999999845999997--8176
Q ss_pred CCCHHHHHHHHHHH--CCCCCEEEEECCCCCC-HHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHCCCEEE-E
Q ss_conf 68888998888752--1333215774367660-245641565543104678998571225388999999998698388-8
Q gi|254780872|r 144 VDNIPYFIKTCCSL--LLSNGLMFISTINRNL-KAMLLAIIGAEYLLQWLPKGTHQYDKFIKPTEMECFLAANKVKII-D 219 (254)
Q Consensus 144 v~d~~~~l~~~~~~--LkpgG~liist~Nr~~-~s~~~~i~~ae~il~~~P~gtH~~~~Fi~p~el~~~l~~~g~~~~-~ 219 (254)
++ ...|+.+.+. +-|+...+-.+-||-. +.++. + ++ +| |-.|...-++++|.+.+++.||-.+ .
T Consensus 79 I~--~~~L~~le~~~~v~P~~~al~i~QdR~~eK~~l~-----~--lg-ip--tapf~~v~s~~dl~~~~~~lg~P~vlK 146 (377)
T PRK06019 79 VP--AEALDLLAARVPVPPGPDALAIAQDRLTEKQFLD-----E--LG-IP--VAPFALVDSAEDLDAAIADLGLPAVLK 146 (377)
T ss_pred CC--HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH-----H--CC-CC--CCCEEEECCHHHHHHHHHHCCCCEEEE
T ss_conf 89--9999999708966879899998862799999999-----7--69-99--888067189999999999729976995
Q ss_pred EEEEEEC
Q ss_conf 5505766
Q gi|254780872|r 220 RVGVVYN 226 (254)
Q Consensus 220 ~~g~~~~ 226 (254)
..-..|+
T Consensus 147 t~~~GYD 153 (377)
T PRK06019 147 TRRGGYD 153 (377)
T ss_pred CCCCCCC
T ss_conf 1334618
No 384
>PRK06545 prephenate dehydrogenase; Validated
Probab=91.73 E-value=0.68 Score=26.18 Aligned_cols=86 Identities=23% Similarity=0.364 Sum_probs=51.3
Q ss_pred CCEEEECCC--HHHHHHHHHHCCC--CEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHC
Q ss_conf 628885698--5699999973198--169952135677888865310112111122100123211153013001243102
Q gi|254780872|r 68 LRILDLGCG--GGLLSEPMAQMGA--TVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEH 143 (254)
Q Consensus 68 ~~VLDiGCG--~G~~s~~la~~g~--~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleH 143 (254)
++|+=||+| +|-++.++++.|. .++|+|.+...++.|.. .+. ++.... ++...-...|+|+..--.
T Consensus 1 k~V~IiGlGLIGgSlalalk~~g~~~~i~~~d~~~~~l~~A~~----~g~-id~~~~---~~~~~~~~~DlVvlatPv-- 70 (357)
T PRK06545 1 KTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSGAQLARALG----FGV-IDELAE---DLARAAAEADLIVLAVPV-- 70 (357)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHH----CCC-CCEECC---CHHHHCCCCCEEEECCCH--
T ss_conf 9799997787899999999854997699996699999999986----899-773048---876715679999994999--
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 68888998888752133321577
Q gi|254780872|r 144 VDNIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 144 v~d~~~~l~~~~~~LkpgG~lii 166 (254)
.....+++++.. ++|+ .++.
T Consensus 71 -~~~~~~l~~l~~-l~~~-~ivT 90 (357)
T PRK06545 71 -DATAALLAELAD-LAPG-VIVT 90 (357)
T ss_pred -HHHHHHHHHHHH-CCCC-CEEE
T ss_conf -999999999872-3899-7899
No 385
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=91.60 E-value=0.35 Score=27.99 Aligned_cols=60 Identities=17% Similarity=0.091 Sum_probs=38.8
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHH-HHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 8001628885698569---99999731981699521356-778888653101121111221001
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTK-NIAIAKNHANMKNINIDYRVSCAE 123 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~-~i~~Ak~~a~~~~~~i~~~~~~~~ 123 (254)
.|+|+.+|=.|++.|+ .+..|++.|++|...|.+.. ..+.+.......+.++.+...|+.
T Consensus 2 ~L~gK~~lITGgs~GIG~aia~~la~~G~~Vii~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlt 65 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVLNYASSEAGAEALVAEIGALGGKALAVQGDVA 65 (248)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 6799889994897689999999999879989999698565899999999963995899990389
No 386
>PRK11749 putative oxidoreductase; Provisional
Probab=91.59 E-value=1.2 Score=24.63 Aligned_cols=39 Identities=26% Similarity=0.412 Sum_probs=28.9
Q ss_pred CCCCCHHHCCEEEECCC-HHHH-HHHHHHCCCCEEEECCHH
Q ss_conf 44588001628885698-5699-999973198169952135
Q gi|254780872|r 60 DDTHPFKGLRILDLGCG-GGLL-SEPMAQMGATVTGIDPST 98 (254)
Q Consensus 60 ~~~~~l~g~~VLDiGCG-~G~~-s~~la~~g~~V~giD~S~ 98 (254)
....+..|+||.=||+| .|+- +..|+++|++|+-+|-.+
T Consensus 133 ~~~~~~~gkkVAIIGaGPAGLsAA~~Lar~G~~VtVfE~~~ 173 (460)
T PRK11749 133 FQPAPKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD 173 (460)
T ss_pred CCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 88866789989998967899999999997698479970478
No 387
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=91.52 E-value=0.45 Score=27.29 Aligned_cols=98 Identities=15% Similarity=0.172 Sum_probs=55.1
Q ss_pred CCEEEECCC--HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCC----CCCCCCCCC----CCC-----CCCCH
Q ss_conf 628885698--569999997319816995213567788886531011211----112210012----321-----11530
Q gi|254780872|r 68 LRILDLGCG--GGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINI----DYRVSCAEE----IAE-----TDEKF 132 (254)
Q Consensus 68 ~~VLDiGCG--~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i----~~~~~~~~~----l~~-----~~~~F 132 (254)
++|-=||.| ++..+..+|.-|..|+-.|+++++++.++....+.--+. .......+. +.. .-..-
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~~~ 83 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALKDA 83 (307)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHCCC
T ss_conf 07999724602099999997349956999589899999999999999988862787745599997515255766566308
Q ss_pred HHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 1300124310268888998888752133321577
Q gi|254780872|r 133 DIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 133 D~V~~~~vleHv~d~~~~l~~~~~~LkpgG~lii 166 (254)
|+|+- .|.|-++-...+++++-.+++|+-.|-=
T Consensus 84 DlVIE-Av~E~levK~~vf~~l~~~~~~~aIlAS 116 (307)
T COG1250 84 DLVIE-AVVEDLELKKQVFAELEALAKPDAILAS 116 (307)
T ss_pred CEEEE-ECCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 87888-5301599999999998865598857862
No 388
>PRK08945 short chain dehydrogenase; Provisional
Probab=91.52 E-value=0.59 Score=26.58 Aligned_cols=48 Identities=23% Similarity=0.298 Sum_probs=37.7
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHC
Q ss_conf 88001628885698569---9999973198169952135677888865310
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANM 110 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~ 110 (254)
..|+|+.+|=.|++.|+ +++.|++.|++|..++-+++.++.+......
T Consensus 9 ~~L~gK~~lITGas~GIG~aiA~~la~~Ga~Vil~~r~~~~l~~~~~el~~ 59 (245)
T PRK08945 9 DLLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEA 59 (245)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 678979899948861899999999998799899996988999999999997
No 389
>PRK12827 short chain dehydrogenase; Provisional
Probab=91.42 E-value=0.37 Score=27.81 Aligned_cols=62 Identities=18% Similarity=0.123 Sum_probs=39.6
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHH----HHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 88001628885698569---999997319816995213567----788886531011211112210012
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKN----IAIAKNHANMKNINIDYRVSCAEE 124 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~----i~~Ak~~a~~~~~~i~~~~~~~~~ 124 (254)
..|+|+.+|=-|.+.|+ .+..|++.|++|..+|.+... .+.........+.++.+...|+.+
T Consensus 2 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~ 70 (251)
T PRK12827 2 ASLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEAEAVAALIEAAGGKALGLAFDVRD 70 (251)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 898998899968255899999999998799899984888532899999999999649849999903899
No 390
>pfam04445 DUF548 Protein of unknown function (DUF548). Protein of unknown function found in proteobacteria. In Salmonella typhimurium, expression of this protein is regulated by heat shock.
Probab=91.38 E-value=0.57 Score=26.68 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=51.6
Q ss_pred CCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHH---HHHHHHHCCC-------CCCCCCCCCCCCC-CCCCCCHHHHE
Q ss_conf 62888569856999999731981699521356778---8886531011-------2111122100123-21115301300
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIA---IAKNHANMKN-------INIDYRVSCAEEI-AETDEKFDIIL 136 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~---~Ak~~a~~~~-------~~i~~~~~~~~~l-~~~~~~FD~V~ 136 (254)
.+|||.-.|-|.-+.-||.+|++|+.|+=|+-+-. -|-.++.... .+++..+++..++ ......+|+|+
T Consensus 77 p~VlDATAGLG~DafiLAsLG~~VtliEr~pvl~~LL~Dal~RA~~~~~~~~~~~~rm~L~~gds~~~l~~~~~~~DvIY 156 (235)
T pfam04445 77 PTVLDATAGLGRDAFVLASLGCRVRLVERHPVVAALLEDGLQRAYQDPEIGAWLQARLHLLHGSSADQLEPNIDQPDVVY 156 (235)
T ss_pred CEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCCHHHHHHHCCCCCCEEE
T ss_conf 83898787757889999818996999978899999999999998748155799996289983887999752468987899
Q ss_pred ECCCHHC
Q ss_conf 1243102
Q gi|254780872|r 137 NMEVIEH 143 (254)
Q Consensus 137 ~~~vleH 143 (254)
.-=++.|
T Consensus 157 LDPMFP~ 163 (235)
T pfam04445 157 LDPMYPH 163 (235)
T ss_pred ECCCCCC
T ss_conf 7376887
No 391
>PRK08265 short chain dehydrogenase; Provisional
Probab=91.32 E-value=0.32 Score=28.19 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=40.2
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 8001628885698569---99999731981699521356778888653101121111221001
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAE 123 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~ 123 (254)
.|+|+.+|=-|.+.|+ .++.|++.|++|..+|.+.+..+.... +-+.++.+.+.|+.
T Consensus 3 ~L~gKvalVTGgs~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~---~~~~~~~~~~~Dv~ 62 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGACVAILDIDADNGAAVAA---SLGERARFIATDIT 62 (261)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---HHCCCEEEEECCCC
T ss_conf 9999989994877689999999999879989999798899999999---81997289981389
No 392
>PRK06701 short chain dehydrogenase; Provisional
Probab=91.31 E-value=0.32 Score=28.23 Aligned_cols=106 Identities=14% Similarity=0.156 Sum_probs=61.7
Q ss_pred CCCCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCC----------
Q ss_conf 4588001628885698569---999997319816995213567-78888653101121111221001232----------
Q gi|254780872|r 61 DTHPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKN-IAIAKNHANMKNINIDYRVSCAEEIA---------- 126 (254)
Q Consensus 61 ~~~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~-i~~Ak~~a~~~~~~i~~~~~~~~~l~---------- 126 (254)
...-|+|+.+|=-|.+.|+ +++.|++.|++|.-++.+.+- .+.+....+..+.++.+..+|+.+..
T Consensus 39 ~~grL~GKvalVTGgs~GIG~aiA~~la~~GA~V~i~~~~~~~~a~~~~~~~~~~G~~~~~~~~Dv~d~~~v~~~v~~~~ 118 (289)
T PRK06701 39 GSGKLKGKVALITGGDSGIGRAVAVAFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEQFCKDAVEETV 118 (289)
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 68877999899968257999999999998799899982894678999999999639908999847899999999999999
Q ss_pred CCCCCHHHHEECC-------CHHCCCC-------------HHHHHHHHHHHCCCCCEEEE
Q ss_conf 1115301300124-------3102688-------------88998888752133321577
Q gi|254780872|r 127 ETDEKFDIILNME-------VIEHVDN-------------IPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 127 ~~~~~FD~V~~~~-------vleHv~d-------------~~~~l~~~~~~LkpgG~lii 166 (254)
..-+..|+++... -++.+.+ +-.+.+.+...|++||.++.
T Consensus 119 ~~fG~iDiLVNNAG~~~~~~~~~~~~~~~~~~~~~vNl~g~f~~~~~~~p~m~~gg~IIn 178 (289)
T PRK06701 119 RELGRLDILVNNAAQQYPQQSLEDITAEQLDKTFRTNIYSYFHMTKAALPHLKPGSAIIN 178 (289)
T ss_pred HHHCCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 985999899988834678887244999999999745217899999999999734977999
No 393
>PRK05875 short chain dehydrogenase; Provisional
Probab=91.21 E-value=0.37 Score=27.82 Aligned_cols=60 Identities=17% Similarity=0.265 Sum_probs=40.8
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHC---CCCCCCCCCCCCC
Q ss_conf 8001628885698569---9999973198169952135677888865310---1121111221001
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANM---KNINIDYRVSCAE 123 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~---~~~~i~~~~~~~~ 123 (254)
.|+|+.+|=.|.+.|+ .++.|++.|++|..++.+++.++.+...... ....+.+...|+.
T Consensus 4 ~L~gK~alVTGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~~~~~~v~~~~~Dvs 69 (277)
T PRK05875 4 SLQDRTYLVTGGGSGIGKGVAAALVAAGAAVMIVGRNPDKLAAAAEEIEALAGGAGAVRYEPADVT 69 (277)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 689998999488749999999999987998999979889999999999961278862899957899
No 394
>KOG1562 consensus
Probab=91.21 E-value=0.35 Score=28.00 Aligned_cols=102 Identities=12% Similarity=0.142 Sum_probs=63.2
Q ss_pred HHCCEEEECCCHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHC-----CCCCCCCCCCCCCCCCC--CCCCHHHHE
Q ss_conf 0162888569856999999731--98169952135677888865310-----11211112210012321--115301300
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM--GATVTGIDPSTKNIAIAKNHANM-----KNINIDYRVSCAEEIAE--TDEKFDIIL 136 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~--g~~V~giD~S~~~i~~Ak~~a~~-----~~~~i~~~~~~~~~l~~--~~~~FD~V~ 136 (254)
+-++||=||-|.|-+....+++ --++.-+|+.++.++..+++... .+.++....+|.-.+.. ..+.||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCEEEEEECCCCCCEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHCCCCCEEEE
T ss_conf 98747999448841301131034601067543367899999987388753678971489955689999870369741899
Q ss_pred E--CCCHHCCC--CHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 1--24310268--8889988887521333215774
Q gi|254780872|r 137 N--MEVIEHVD--NIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 137 ~--~~vleHv~--d~~~~l~~~~~~LkpgG~liis 167 (254)
. ++..---. -.+.++..+.+.|||||+++.-
T Consensus 201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562 201 TDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 71677675588988888999999851799279973
No 395
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=91.20 E-value=0.32 Score=28.22 Aligned_cols=41 Identities=27% Similarity=0.393 Sum_probs=35.0
Q ss_pred HHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf 001628885698569---99999731981699521356778888
Q gi|254780872|r 65 FKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAK 105 (254)
Q Consensus 65 l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak 105 (254)
|+|+.+|=-|.+.|+ .++.+++.|++|..+|.+++.++..+
T Consensus 3 L~gKvalITGgs~GIG~aia~~~a~~Ga~V~i~~r~~~~l~~~~ 46 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELE 46 (262)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 89988999067878999999999987999999989989999999
No 396
>pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.
Probab=91.17 E-value=0.72 Score=26.03 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=53.6
Q ss_pred CCCHHHCCEEEECCC-HH-HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECC
Q ss_conf 588001628885698-56-9999997319816995213567788886531011211112210012321115301300124
Q gi|254780872|r 62 THPFKGLRILDLGCG-GG-LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNME 139 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG-~G-~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~ 139 (254)
...+.|++|.=||+| .| .++..+...|.+|.+.|++..... ...+ + ...+.+++ -..-|+|++.-
T Consensus 31 g~~L~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~------~~~~--~--~~~~l~~l---l~~sDii~~~~ 97 (176)
T pfam02826 31 GRELSGKTVGIIGLGRIGRAVARRLKAFGMKVIAYDRYPKAEA------EALG--A--RYVSLDEL---LAESDVVSLHL 97 (176)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCHH------HHCC--E--EECCHHHH---HHHCCEEEECC
T ss_conf 5557999999989699999999999983981254379876102------3157--1--66689999---86299887547
Q ss_pred CHHCCCCHHHHH-HHHHHHCCCCCEEEE
Q ss_conf 310268888998-888752133321577
Q gi|254780872|r 140 VIEHVDNIPYFI-KTCCSLLLSNGLMFI 166 (254)
Q Consensus 140 vleHv~d~~~~l-~~~~~~LkpgG~lii 166 (254)
-+ .++...++ ++....+|+|..++=
T Consensus 98 pl--t~~T~~li~~~~l~~mk~~a~lIN 123 (176)
T pfam02826 98 PL--TPETRHLINAERLALMKPGAILIN 123 (176)
T ss_pred CC--CCCCCCCCCHHHHHHHCCCCEEEE
T ss_conf 67--420246346999985189988998
No 397
>PRK06914 short chain dehydrogenase; Provisional
Probab=91.16 E-value=0.59 Score=26.59 Aligned_cols=46 Identities=11% Similarity=0.036 Sum_probs=34.7
Q ss_pred HHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHC
Q ss_conf 001628885698569---9999973198169952135677888865310
Q gi|254780872|r 65 FKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANM 110 (254)
Q Consensus 65 l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~ 110 (254)
++++.+|=-||++|+ ++..|++.|++|.+.+-+++.++........
T Consensus 1 l~~K~alITGassGIG~a~A~~la~~G~~V~~~~r~~~~~~~l~~~~~~ 49 (280)
T PRK06914 1 MNKKIAIITGASSGFGLLTTLELAKKDYLVIATMRNLEKQENLISQAAQ 49 (280)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 9519899907344999999999998799899998988999999999996
No 398
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=91.11 E-value=0.31 Score=28.30 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=34.1
Q ss_pred HHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf 001628885698569---99999731981699521356778888
Q gi|254780872|r 65 FKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAK 105 (254)
Q Consensus 65 l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak 105 (254)
|+|+.+|=-|.+.|+ .++.|++.|++|...|.+++..+...
T Consensus 3 L~gKvalVTGas~GIG~aia~~la~~Ga~V~i~d~~~~~~~~~~ 46 (256)
T PRK07067 3 LQGKVALLTGAASGIGEAVAQRYLREGARVVLADIKPARAALAA 46 (256)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 89988999376778999999999987999999979889999999
No 399
>PRK07326 short chain dehydrogenase; Provisional
Probab=91.09 E-value=0.36 Score=27.88 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=35.9
Q ss_pred HHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHH
Q ss_conf 001628885698569---9999973198169952135677888865
Q gi|254780872|r 65 FKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNH 107 (254)
Q Consensus 65 l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~ 107 (254)
++||.+|=-|++.|+ .+..|++.|++|..+|.+++.++.+...
T Consensus 3 ~~GKvalITGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~ 48 (235)
T PRK07326 3 GNGKAALVTGGSKGIGFAVAEALAAAGYRVAICARDESELEAAAQE 48 (235)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
T ss_conf 9998999938267999999999998799999998988999999998
No 400
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.08 E-value=0.42 Score=27.47 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=34.6
Q ss_pred HHHCCEEEECCCH--HH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC
Q ss_conf 0016288856985--69---9999973198169952135677888865310112
Q gi|254780872|r 65 FKGLRILDLGCGG--GL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI 113 (254)
Q Consensus 65 l~g~~VLDiGCG~--G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~ 113 (254)
|+|+++|=.|+|+ |+ .+..|++.|++|.-.+-++...+.++.-+++.+.
T Consensus 5 L~GK~alITGaa~~~GIG~aiA~~La~~GA~V~i~~~~e~~~~~~~~~~~~~g~ 58 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGDALGKRVKPLAESLGS 58 (271)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 799979997999985499999999998699999981866889999999996498
No 401
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=91.07 E-value=1.1 Score=24.98 Aligned_cols=91 Identities=22% Similarity=0.261 Sum_probs=57.2
Q ss_pred HCCEEEECCC--HHHHHHHHHHC-CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCC--CCCCHHHHEECCC
Q ss_conf 1628885698--56999999731-9816995213567788886531011211112210012-321--1153013001243
Q gi|254780872|r 67 GLRILDLGCG--GGLLSEPMAQM-GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE-IAE--TDEKFDIILNMEV 140 (254)
Q Consensus 67 g~~VLDiGCG--~G~~s~~la~~-g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~-l~~--~~~~FD~V~~~~v 140 (254)
|.+||=.|.. -|.++..||+. |+.+.++--|++-.+.++.. -...-++|...+..+ ... ....+|+|+..-
T Consensus 143 g~~VLv~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~l--GAd~vi~y~~~d~~~~v~~~t~g~gvDvv~D~v- 219 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKEL--GADHVINYREEDFVEQVRELTGGKGVDVVLDTV- 219 (326)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHCCCCCCEEEECC-
T ss_conf 99799977854699999999998499589998175788999873--998897056424899999983799878899798-
Q ss_pred HHCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 10268888998888752133321577
Q gi|254780872|r 141 IEHVDNIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 141 leHv~d~~~~l~~~~~~LkpgG~lii 166 (254)
=...+....+.|+++|.++.
T Consensus 220 ------G~~~~~~~l~~l~~~G~lv~ 239 (326)
T COG0604 220 ------GGDTFAASLAALAPGGRLVS 239 (326)
T ss_pred ------CHHHHHHHHHHHCCCCEEEE
T ss_conf ------67999999997425958999
No 402
>pfam00145 DNA_methylase C-5 cytosine-specific DNA methylase.
Probab=91.05 E-value=0.54 Score=26.80 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=42.4
Q ss_pred CCEEEECCCHHHHHHHHHHCCCCE-EEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCCHHHHEE
Q ss_conf 628885698569999997319816-9952135677888865310112111122100123211-153013001
Q gi|254780872|r 68 LRILDLGCGGGLLSEPMAQMGATV-TGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAET-DEKFDIILN 137 (254)
Q Consensus 68 ~~VLDiGCG~G~~s~~la~~g~~V-~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~-~~~FD~V~~ 137 (254)
++|+|+=||.|-++..+.+.|.+| .++|+.+.+++.-+.+... ..++|+.++... -...|+++.
T Consensus 1 ~~vidlF~G~GG~s~G~~~aG~~~~~a~e~d~~a~~ty~~N~~~------~~~~Di~~~~~~~~~~~Dvl~g 66 (319)
T pfam00145 1 FKFIDLFAGIGGFRLGLEQAGFECVAANEIDKSAAKTYEANFPK------VPIGDITLIDIKDIPDIDILTG 66 (319)
T ss_pred CCEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCC------CCCCCCCCCCHHHCCCCCEEEE
T ss_conf 95899780707899999987992999983899999999987799------9617754088747888688986
No 403
>KOG1198 consensus
Probab=91.03 E-value=0.63 Score=26.40 Aligned_cols=96 Identities=24% Similarity=0.327 Sum_probs=58.2
Q ss_pred HHHCCEEEECCCHH--HHHHHHHHC-CCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCHHHHEECC
Q ss_conf 00162888569856--999999731-98169952135677888865310112111122100123211--15301300124
Q gi|254780872|r 65 FKGLRILDLGCGGG--LLSEPMAQM-GATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAET--DEKFDIILNME 139 (254)
Q Consensus 65 l~g~~VLDiGCG~G--~~s~~la~~-g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~--~~~FD~V~~~~ 139 (254)
-+|++||=+|-++| .++..+|+. ++..+...-|.+.++.++.. ....-++|...+..+.... ...||+|+=+
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~l--GAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~- 232 (347)
T KOG1198 156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKL--GADEVVDYKDENVVELIKKYTGKGVDVVLDC- 232 (347)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHC--CCCCCCCCCCHHHHHHHHHHCCCCCEEEEEC-
T ss_conf 8998699993874899999999987497479998155416899972--9965124885779999876227885099988-
Q ss_pred CHHCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 31026888899888875213332157743
Q gi|254780872|r 140 VIEHVDNIPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 140 vleHv~d~~~~l~~~~~~LkpgG~liist 168 (254)
+.++ .....+..++++||..++++
T Consensus 233 ----vg~~-~~~~~~~~l~~~g~~~~i~~ 256 (347)
T KOG1198 233 ----VGGS-TLTKSLSCLLKGGGGAYIGL 256 (347)
T ss_pred ----CCCC-CCHHHHHHHCCCCCCEEEEE
T ss_conf ----8897-32432343323787269994
No 404
>pfam02636 DUF185 Uncharacterized ACR, COG1565. This family contains several uncharacterized proteins. One member has been described as an ATP synthase beta subunit transcription termination factor rho protein.
Probab=90.93 E-value=0.65 Score=26.30 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=30.7
Q ss_pred HCCEEEECCCHHHHHHHHH----HC------CCCEEEECCHHHHHHHHHHHHH
Q ss_conf 1628885698569999997----31------9816995213567788886531
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMA----QM------GATVTGIDPSTKNIAIAKNHAN 109 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la----~~------g~~V~giD~S~~~i~~Ak~~a~ 109 (254)
..+|+|+|+|.|.++..+. +. ..++.-||+|+.+.+..+.+.+
T Consensus 18 ~~~ivE~G~G~G~L~~dil~~l~~~~p~~~~~~~y~lvE~s~~L~~~Q~~~L~ 70 (240)
T pfam02636 18 PLRLVEIGAGRGTLAADILRALRKLLPEFYEALEYHLVEISPALRERQKERLA 70 (240)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHCHHHHHCCEEEEEECCHHHHHHHHHHHH
T ss_conf 70899979971899999999998759465753469998089999999999752
No 405
>PRK08703 short chain dehydrogenase; Provisional
Probab=90.91 E-value=0.63 Score=26.39 Aligned_cols=44 Identities=25% Similarity=0.322 Sum_probs=36.7
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf 88001628885698569---999997319816995213567788886
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKN 106 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~ 106 (254)
..|+|+.+|=.||+.|+ +++.|++.|++|..++-+++.++.+..
T Consensus 2 ~~L~gK~~lITGas~GIG~aiA~~la~~Ga~V~l~~r~~~~l~~~~~ 48 (239)
T PRK08703 2 ATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYD 48 (239)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
T ss_conf 48596989994886289999999999879989999798889999999
No 406
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=90.91 E-value=1.4 Score=24.21 Aligned_cols=70 Identities=26% Similarity=0.280 Sum_probs=40.8
Q ss_pred CHHHCCEEEECCC-HHH--HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCC
Q ss_conf 8001628885698-569--9999973198169952135677888865310112111122100123211153013001243
Q gi|254780872|r 64 PFKGLRILDLGCG-GGL--LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEV 140 (254)
Q Consensus 64 ~l~g~~VLDiGCG-~G~--~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~v 140 (254)
|-+-++|.=||.| +|+ ++..|.++|++|+|-|..+.-. .+ ..++.|..+.. ..+.+.+ ..+|+|+-+-.
T Consensus 5 ~~~~k~ih~iGigG~GmsalA~~l~~~G~~V~gsD~~~~~~--~~-~L~~~Gi~v~~-g~~~~~l----~~~d~vV~Sp~ 76 (459)
T PRK00421 5 PRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAV--TQ-RLLELGAIIFI-GHDAENI----KGADVVVVSSA 76 (459)
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHCCCEEEEECCCCCHH--HH-HHHHCCCEEEC-CCCHHHC----CCCCEEEECCC
T ss_conf 65678899998668889999999996899399988989978--99-99978799977-9897987----99999998998
Q ss_pred H
Q ss_conf 1
Q gi|254780872|r 141 I 141 (254)
Q Consensus 141 l 141 (254)
+
T Consensus 77 I 77 (459)
T PRK00421 77 I 77 (459)
T ss_pred C
T ss_conf 5
No 407
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=90.68 E-value=0.59 Score=26.56 Aligned_cols=44 Identities=23% Similarity=0.392 Sum_probs=30.9
Q ss_pred HCCEEEECCCHHHHHHHHHH----C------CCCEEEECCHHHHHHHHHHHHHC
Q ss_conf 16288856985699999973----1------98169952135677888865310
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQ----M------GATVTGIDPSTKNIAIAKNHANM 110 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~----~------g~~V~giD~S~~~i~~Ak~~a~~ 110 (254)
...++|+|.|+|.++.-+.+ + ..++.-|++|++..+.-|+..+.
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCHHHHHHCEEEEEECCHHHHHHHHHHHHC
T ss_conf 844899679967699999999987597877305599992598999999998743
No 408
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=90.58 E-value=0.99 Score=25.19 Aligned_cols=87 Identities=20% Similarity=0.275 Sum_probs=54.4
Q ss_pred CCEEEECCC--HHHHHHHHHHCCCCE--EEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCHHHHEECCCHH
Q ss_conf 628885698--569999997319816--9952135677888865310112111122100123-21115301300124310
Q gi|254780872|r 68 LRILDLGCG--GGLLSEPMAQMGATV--TGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEI-AETDEKFDIILNMEVIE 142 (254)
Q Consensus 68 ~~VLDiGCG--~G~~s~~la~~g~~V--~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l-~~~~~~FD~V~~~~vle 142 (254)
.+|.=+|.| +|.++..+.+.|..| +|.|.+...++.|.. .+ +.+... .+. .......|+|+..--+
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lg--v~d~~~--~~~~~~~~~~aDlVivavPi- 74 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LG--VIDELT--VAGLAEAAAEADLVIVAVPI- 74 (279)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH----CC--CCHHHC--CCHHHHHCCCCCEEEEECCH-
T ss_conf 4899987746779999999976984799724774677877663----58--530100--11555413569989995778-
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 26888899888875213332157
Q gi|254780872|r 143 HVDNIPYFIKTCCSLLLSNGLMF 165 (254)
Q Consensus 143 Hv~d~~~~l~~~~~~LkpgG~li 165 (254)
.....+++++...|+||..+.
T Consensus 75 --~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 75 --EATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred --HHHHHHHHHHCCCCCCCCEEE
T ss_conf --899999998630379998897
No 409
>TIGR03253 oxalate_frc formyl-CoA transferase. This enzyme, formyl-CoA transferase, transfers coenzyme A from formyl-CoA to oxalate. It forms a pathway, together with oxalyl-CoA decarboxylase, for oxalate degradation; decarboxylation by the latter gene regenerates formyl-CoA. The two enzymes typically are encoded by a two-gene operon.
Probab=90.42 E-value=0.4 Score=27.63 Aligned_cols=13 Identities=15% Similarity=0.181 Sum_probs=5.8
Q ss_pred HHHHHHHHHCCCE
Q ss_conf 9999999986983
Q gi|254780872|r 204 TEMECFLAANKVK 216 (254)
Q Consensus 204 ~el~~~l~~~g~~ 216 (254)
+|+.+.++++|.-
T Consensus 321 ~e~~~~l~~~gvp 333 (415)
T TIGR03253 321 FEVTEWLNQYGIP 333 (415)
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999998604862
No 410
>PRK06125 short chain dehydrogenase; Provisional
Probab=90.42 E-value=0.53 Score=26.85 Aligned_cols=74 Identities=19% Similarity=0.308 Sum_probs=48.0
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHC-CCCCCCCCCCCC------CCCCCCCCCHH
Q ss_conf 8001628885698569---9999973198169952135677888865310-112111122100------12321115301
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANM-KNINIDYRVSCA------EEIAETDEKFD 133 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~-~~~~i~~~~~~~------~~l~~~~~~FD 133 (254)
.|+|+++|=-|.+.|+ .++.|++.|++|..+|.+++.++.+...... .+.++.....|+ +++...-+..|
T Consensus 4 ~l~gK~alITG~s~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~iD 83 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLVLAARDADALAALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCC
T ss_conf 86999899968776899999999998799899997988999999999987009866999888999999999999858998
Q ss_pred HHEE
Q ss_conf 3001
Q gi|254780872|r 134 IILN 137 (254)
Q Consensus 134 ~V~~ 137 (254)
+++.
T Consensus 84 iLVn 87 (259)
T PRK06125 84 ILVN 87 (259)
T ss_pred EEEE
T ss_conf 9997
No 411
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.41 E-value=1.1 Score=24.92 Aligned_cols=68 Identities=25% Similarity=0.332 Sum_probs=43.6
Q ss_pred CCEEEECCC-HHH-HHHHHHHCC-CCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---CCCCCHHHHEEC
Q ss_conf 628885698-569-999997319-81699521356778888653101121111221001232---111530130012
Q gi|254780872|r 68 LRILDLGCG-GGL-LSEPMAQMG-ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA---ETDEKFDIILNM 138 (254)
Q Consensus 68 ~~VLDiGCG-~G~-~s~~la~~g-~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~---~~~~~FD~V~~~ 138 (254)
++||=|||| -|. .+..+++.| .+|+..|-|....+.+... ...+++..+.|+.+.. ..-+.+|+|++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~---~~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAEL---IGGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH---CCCCCEEEEECCCCHHHHHHHHHCCCEEEEE
T ss_conf 7289989866679999999857896299984888899998753---3466316994256758899987257789992
No 412
>PRK07454 short chain dehydrogenase; Provisional
Probab=90.39 E-value=0.5 Score=27.02 Aligned_cols=72 Identities=11% Similarity=0.057 Sum_probs=47.7
Q ss_pred HCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------CCCCCHH
Q ss_conf 1628885698569---99999731981699521356778888653101121111221001232----------1115301
Q gi|254780872|r 67 GLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA----------ETDEKFD 133 (254)
Q Consensus 67 g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~----------~~~~~FD 133 (254)
.|.+|=-|++.|+ .+..|++.|++|..++-+++.++.........+.++.+...|+.+.. ..-+..|
T Consensus 6 mKvalITGas~GIG~a~A~~la~~G~~V~l~~R~~~~l~~~~~e~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iD 85 (241)
T PRK07454 6 MPTALITGASRGIGKATALAFAKAGWDLALVARSQDALEALAEELRSTGVKVAAYSIDLSNPEAIAPGIAELLEQFGCPS 85 (241)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCC
T ss_conf 98899917587899999999998799899998999999999999996599289999518999999999999999759988
Q ss_pred HHEEC
Q ss_conf 30012
Q gi|254780872|r 134 IILNM 138 (254)
Q Consensus 134 ~V~~~ 138 (254)
+++..
T Consensus 86 iLVnN 90 (241)
T PRK07454 86 VLINN 90 (241)
T ss_pred EEEEC
T ss_conf 99988
No 413
>PRK07832 short chain dehydrogenase; Provisional
Probab=90.39 E-value=0.55 Score=26.77 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=44.0
Q ss_pred CCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCC----------CCCCCHH
Q ss_conf 628885698569---99999731981699521356778888653101121-111221001232----------1115301
Q gi|254780872|r 68 LRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNIN-IDYRVSCAEEIA----------ETDEKFD 133 (254)
Q Consensus 68 ~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~-i~~~~~~~~~l~----------~~~~~FD 133 (254)
+++|=-|+++|+ ++..|++.|++|..+|.+++-++......+..+.. ..+...|+.+.. ...+..|
T Consensus 1 K~alITGassGIG~a~A~~la~~Ga~v~l~~r~~~~l~~~~~~l~~~g~~~~~~~~~Dvsd~~~v~~~~~~~~~~~g~iD 80 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHPSMD 80 (272)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 97999472019999999999988998999989889999999999845897147885668999999999999999729988
Q ss_pred HHEEC
Q ss_conf 30012
Q gi|254780872|r 134 IILNM 138 (254)
Q Consensus 134 ~V~~~ 138 (254)
++++.
T Consensus 81 iLiNN 85 (272)
T PRK07832 81 VVMNI 85 (272)
T ss_pred EEEEC
T ss_conf 89987
No 414
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=90.34 E-value=0.5 Score=27.04 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=39.1
Q ss_pred CCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 628885698569---999997319816995213567788886531011211112210012
Q gi|254780872|r 68 LRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124 (254)
Q Consensus 68 ~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~ 124 (254)
++||=.|++.|+ .+..|++.|++|..+|.+++.++.+....+..+ ++.+...|+.+
T Consensus 1 mnVlITGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g-~~~~~~~Dv~~ 59 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKELG-EVYAIKADLSD 59 (259)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCC-CEEEEEEECCC
T ss_conf 989997587789999999999879999999799899999999987418-87999963699
No 415
>PRK13984 putative oxidoreductase; Provisional
Probab=90.26 E-value=1.6 Score=23.86 Aligned_cols=100 Identities=21% Similarity=0.270 Sum_probs=52.3
Q ss_pred CCHHHCCEEEECCC-HHHH-HHHHHHCCCCEEEECCHHH-----------------HHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 88001628885698-5699-9999731981699521356-----------------778888653101121111221001
Q gi|254780872|r 63 HPFKGLRILDLGCG-GGLL-SEPMAQMGATVTGIDPSTK-----------------NIAIAKNHANMKNINIDYRVSCAE 123 (254)
Q Consensus 63 ~~l~g~~VLDiGCG-~G~~-s~~la~~g~~V~giD~S~~-----------------~i~~Ak~~a~~~~~~i~~~~~~~~ 123 (254)
.+-.|++|.=||+| .|+- +..|+++|++|+-.|-.+. .++.--...+..|+.+.+-..--.
T Consensus 279 ~~~tGKKVAVIGsGPAGLaaA~~Lar~Gh~VtVFE~~~~~GGlL~yGIP~fRLpk~vv~rei~~i~~~GV~f~~n~~VGk 358 (604)
T PRK13984 279 PPKKGKKVAIVGSGPAGLSAAYFLATMGYEVEVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHTNTRVGK 358 (604)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC
T ss_conf 88789989998986899999999998698689974567789723315872228789999999999972989976857798
Q ss_pred CCC--CCCCCHHHHEEC-CC------------HHCCCCHHHHHHHHHHHCCCCC
Q ss_conf 232--111530130012-43------------1026888899888875213332
Q gi|254780872|r 124 EIA--ETDEKFDIILNM-EV------------IEHVDNIPYFIKTCCSLLLSNG 162 (254)
Q Consensus 124 ~l~--~~~~~FD~V~~~-~v------------leHv~d~~~~l~~~~~~LkpgG 162 (254)
++. ...+.||.|+.. +. ++-|-+-..+|..+.+.+...|
T Consensus 359 Dit~eeL~~~yDAVfLa~Ga~~~r~L~IpGedl~GV~~AldfL~~~~~~~~g~~ 412 (604)
T PRK13984 359 DISLEELREKHDAVFVSTGFTLGRSTRIPGSDHPNVIQALPLLREIRDYLRGEG 412 (604)
T ss_pred CCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCC
T ss_conf 478999970589999953888776689899888881767999999986542578
No 416
>pfam07109 Mg-por_mtran_C Magnesium-protoporphyrin IX methyltransferase C-terminus. This family represents the C-terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (EC:2.1.1.11). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX methylester using S-adenosyl-L-methionine as a cofactor.
Probab=90.13 E-value=1.6 Score=23.91 Aligned_cols=80 Identities=13% Similarity=0.092 Sum_probs=51.8
Q ss_pred ECCCHHCCC--CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCH-HHCCCHHHHHHHHHHC
Q ss_conf 124310268--8889988887521333215774367660245641565543104678998571-2253889999999986
Q gi|254780872|r 137 NMEVIEHVD--NIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQY-DKFIKPTEMECFLAAN 213 (254)
Q Consensus 137 ~~~vleHv~--d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~-~~Fi~p~el~~~l~~~ 213 (254)
|++||-|-+ |...+|..+....+ |.++|+.-=||+.=.++- ++-++.|++---. -.-+++++|.+.+..+
T Consensus 1 cMDsLIHY~~~d~~~~l~~La~rt~--~~iifTfAP~T~~L~~m~-----~vGklFPr~dRsp~i~p~~~~~l~~~l~~~ 73 (97)
T pfam07109 1 CMDVLIHYPAEDAAAMLSHLASLTK--TRIVFTFAPKTPLLAALK-----RIGKLFPGSSRSTRAYPHAEADIQRILSEL 73 (97)
T ss_pred CCCEEECCCHHHHHHHHHHHHHHCC--CCEEEEECCCCHHHHHHH-----HHHCCCCCCCCCCCEEECCHHHHHHHHHHC
T ss_conf 9633734778999999999997317--948999779749999999-----975518998899607872889999999977
Q ss_pred CCEEEEEEEE
Q ss_conf 9838885505
Q gi|254780872|r 214 KVKIIDRVGV 223 (254)
Q Consensus 214 g~~~~~~~g~ 223 (254)
|+++.....+
T Consensus 74 g~~~~r~~rv 83 (97)
T pfam07109 74 GWQIAREGRV 83 (97)
T ss_pred CCEEEEEEEE
T ss_conf 9806630110
No 417
>KOG1201 consensus
Probab=90.11 E-value=1.2 Score=24.71 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=39.9
Q ss_pred HHHHHHHCCCCCCCCCCHHHCCEEEECCCHH---HHHHHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf 9998865187644458800162888569856---999999731981699521356778888
Q gi|254780872|r 48 QDKIMQHFQCKSDDTHPFKGLRILDLGCGGG---LLSEPMAQMGATVTGIDPSTKNIAIAK 105 (254)
Q Consensus 48 ~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G---~~s~~la~~g~~V~giD~S~~~i~~Ak 105 (254)
...+...+... ..+..+|..||=-|.|.| .++..+|++|+.+.-.|+.++..+...
T Consensus 21 ~~s~~~~~l~~--~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv 79 (300)
T KOG1201 21 LESLIKLLLPK--PLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETV 79 (300)
T ss_pred HHHHHHHHCCC--CHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHH
T ss_conf 99999875554--334406988999689860789999999970784899955651239999
No 418
>PRK12744 short chain dehydrogenase; Provisional
Probab=90.10 E-value=0.67 Score=26.24 Aligned_cols=104 Identities=19% Similarity=0.199 Sum_probs=55.9
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHH----HHHHHHHHHCCCCCCCCCCCCCCCCC---------
Q ss_conf 88001628885698569---999997319816995213567----78888653101121111221001232---------
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKN----IAIAKNHANMKNINIDYRVSCAEEIA--------- 126 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~----i~~Ak~~a~~~~~~i~~~~~~~~~l~--------- 126 (254)
..|+|+.+|=.|.+.|+ .++.|++.|++|+.+|..... .+......+..+.++.+...|+.+..
T Consensus 4 ~~L~gKvalVTGgs~GIG~aiA~~la~~Ga~vv~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~ 83 (257)
T PRK12744 4 HSLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAATKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDA 83 (257)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 99899989992887589999999999879989999378743689999999999973992899976889999999999999
Q ss_pred -CCCCCHHHHEEC-CCH-----HCC-------------CCHHHHHHHHHHHCCCCCEEEE
Q ss_conf -111530130012-431-----026-------------8888998888752133321577
Q gi|254780872|r 127 -ETDEKFDIILNM-EVI-----EHV-------------DNIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 127 -~~~~~FD~V~~~-~vl-----eHv-------------~d~~~~l~~~~~~LkpgG~lii 166 (254)
..-+..|+++.. +.. +.+ .-+-.+.+++.+.++.+|.++.
T Consensus 84 ~~~~G~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~m~~~G~ii~ 143 (257)
T PRK12744 84 KAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVT 143 (257)
T ss_pred HHHCCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 998099889997664456772333228888889888876699999999998741894999
No 419
>PRK06057 short chain dehydrogenase; Provisional
Probab=90.07 E-value=0.36 Score=27.94 Aligned_cols=42 Identities=24% Similarity=0.174 Sum_probs=35.3
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf 8001628885698569---99999731981699521356778888
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAK 105 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak 105 (254)
-|+|+.+|=-|.+.|+ .++.|++.|++|..+|.+++..+.+.
T Consensus 4 rL~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~d~~~~~~~~~~ 48 (255)
T PRK06057 4 RLAGRVAVITGGASGIGLATARRMRAEGATVVVGDIDPEAGKAAA 48 (255)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 889998999684888999999999986998999969889999999
No 420
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase; InterPro: IPR011286 This entry describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (IPR002198 from INTERPRO). This protein has been characterised in Erwinia chrysanthemi as an enzyme of pectin degradation .; GO: 0008678 2-deoxy-D-gluconate 3-dehydrogenase activity, 0051287 NAD binding.
Probab=89.92 E-value=0.32 Score=28.19 Aligned_cols=114 Identities=20% Similarity=0.252 Sum_probs=62.2
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEEC-CHHHHHHH----HHHHHHCCCCCCCCCCC-----CCCCCCCCCC
Q ss_conf 8001628885698569---9999973198169952-13567788----88653101121111221-----0012321115
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGID-PSTKNIAI----AKNHANMKNINIDYRVS-----CAEEIAETDE 130 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD-~S~~~i~~----Ak~~a~~~~~~i~~~~~-----~~~~l~~~~~ 130 (254)
.|+|+..|=-||.||+ ++..||+.|++|+|+- .|+ +-|. ++.-.+...+.+++... .+++.....+
T Consensus 2 sL~GK~alvTGa~tGlGQG~a~gLA~AGadi~g~~~~~~-~~ET~~~v~~~Gr~f~~~~~Dl~~~~~~~~~~~~~~~~~g 80 (249)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGVGHISE-PSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFG 80 (249)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCC-HHHHHHHHHHHCCCEEHHHHHHHCHHHHHHHHHHHHHHHC
T ss_conf 878776888259887368999999857741785143126-3888999998252100021212232137899999998618
Q ss_pred CHHHHEEC-CCH------HCC-CCHHHH--------H---H-HHHHHCCCC--CEEE-EECCCCCCHHHHHHHHH
Q ss_conf 30130012-431------026-888899--------8---8-887521333--2157-74367660245641565
Q gi|254780872|r 131 KFDIILNM-EVI------EHV-DNIPYF--------I---K-TCCSLLLSN--GLMF-ISTINRNLKAMLLAIIG 182 (254)
Q Consensus 131 ~FD~V~~~-~vl------eHv-~d~~~~--------l---~-~~~~~Lkpg--G~li-ist~Nr~~~s~~~~i~~ 182 (254)
++|+.+.. +++ |.- .|...+ | + -.++.|+.| |+++ |+ +++||--+|-.
T Consensus 81 ~~DiLVNNAGIIrR~da~~f~e~dWd~V~nvNlk~vF~l~q~~a~~~l~~G~~GkiiNIA----S~LSFQGGirV 151 (249)
T TIGR01832 81 KIDILVNNAGIIRREDAVEFSEKDWDDVMNVNLKSVFFLTQAAAKQFLKQGRGGKIINIA----SLLSFQGGIRV 151 (249)
T ss_pred CCCEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEH----HHHHHCCCCCC
T ss_conf 865676074221045775156144579998668999999999999999648995057514----23442267551
No 421
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.90 E-value=0.59 Score=26.59 Aligned_cols=44 Identities=18% Similarity=0.239 Sum_probs=32.6
Q ss_pred CCHHHCCEEEECCC--HHH---HHHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf 88001628885698--569---999997319816995213567788886
Q gi|254780872|r 63 HPFKGLRILDLGCG--GGL---LSEPMAQMGATVTGIDPSTKNIAIAKN 106 (254)
Q Consensus 63 ~~l~g~~VLDiGCG--~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~ 106 (254)
.+|+||++|=.|.+ .|+ .+..|++.|++|.-.|.+++..+.++.
T Consensus 2 ~~L~GK~alVTGaa~g~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~ 50 (254)
T PRK07533 2 MPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEP 50 (254)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
T ss_conf 9899998999688898089999999999879999998288778999999
No 422
>PRK06101 short chain dehydrogenase; Provisional
Probab=89.85 E-value=1.7 Score=23.66 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=31.0
Q ss_pred CCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf 628885698569---99999731981699521356778888
Q gi|254780872|r 68 LRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAK 105 (254)
Q Consensus 68 ~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak 105 (254)
++||=.|++.|+ +++.+++.|++|..++-+++.++...
T Consensus 2 ktvlITGassGIG~a~A~~la~~G~~Vi~~~R~~~~l~~~~ 42 (241)
T PRK06101 2 TSVLITGATSGIGKQLALDYAKAGWKVIACGRNEAVLDELH 42 (241)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 98999224049999999999987998999989999999999
No 423
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=89.83 E-value=1.2 Score=24.68 Aligned_cols=94 Identities=17% Similarity=0.246 Sum_probs=59.9
Q ss_pred CCCCCCCHHHCCEEEECCCH-H-HHHHHHHHCCCCE-EEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 64445880016288856985-6-9999997319816-9952135677888865310112111122100123211153013
Q gi|254780872|r 58 KSDDTHPFKGLRILDLGCGG-G-LLSEPMAQMGATV-TGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDI 134 (254)
Q Consensus 58 ~~~~~~~l~g~~VLDiGCG~-G-~~s~~la~~g~~V-~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~ 134 (254)
+.....+++|++|.=||+|. | ..+..|...|.+| +|.-......+.| +..+.++ .++++ .-..-|+
T Consensus 8 ~D~dl~~lk~k~iaViGYGsQG~AhAlNLrDSG~~V~vglr~gs~S~~kA----~~dGf~v----~~~~e---A~~~aDi 76 (336)
T PRK05479 8 KDADLSLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKA----EADGFEV----LTVAE---AAKWADV 76 (336)
T ss_pred CCCCHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHH----HHCCCEE----CCHHH---HHHHCCE
T ss_conf 67894787799799975270768988553744997799979998039999----9879943----67999---9974686
Q ss_pred HEECCCHHCCCCH--HHHH-HHHHHHCCCCCEEEEE
Q ss_conf 0012431026888--8998-8887521333215774
Q gi|254780872|r 135 ILNMEVIEHVDNI--PYFI-KTCCSLLLSNGLMFIS 167 (254)
Q Consensus 135 V~~~~vleHv~d~--~~~l-~~~~~~LkpgG~liis 167 (254)
|..+ +||. ..+. +++...||||-.|.|+
T Consensus 77 i~~L-----~PD~~q~~vy~~~I~p~lk~G~~L~Fa 107 (336)
T PRK05479 77 IMIL-----LPDELQAEVYKEEIEPNLKEGAALAFA 107 (336)
T ss_pred EEEE-----CCHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 6542-----875778999999998545899768861
No 424
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=89.56 E-value=1.4 Score=24.18 Aligned_cols=88 Identities=22% Similarity=0.291 Sum_probs=52.6
Q ss_pred CEEEECCC--HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCC
Q ss_conf 28885698--5699999973198169952135677888865310112111122100123211153013001243102688
Q gi|254780872|r 69 RILDLGCG--GGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVDN 146 (254)
Q Consensus 69 ~VLDiGCG--~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d 146 (254)
+|==||.| +.-++..|++.|++|++.|.+++..+.+. ..+... ..+.+++...-+.-++|+.+ +..-+.
T Consensus 2 kIGfIGLG~MG~~mA~nL~~~G~~V~v~d~~~~~~~~~~----~~g~~~---~~s~~e~~~~l~~~~vI~~~--vp~g~~ 72 (298)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG----KLGITA---RHSLEELVSKLEAPRAIWVM--VPAGEV 72 (298)
T ss_pred EEEEECHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHH----HCCCEE---CCCHHHHHHHCCCCCEEEEE--CCCCHH
T ss_conf 799983467689999999977994899849989999999----869954---28999999737899889997--689455
Q ss_pred HHHHHHHHHHHCCCCCEEE
Q ss_conf 8899888875213332157
Q gi|254780872|r 147 IPYFIKTCCSLLLSNGLMF 165 (254)
Q Consensus 147 ~~~~l~~~~~~LkpgG~li 165 (254)
...++.++...|+||-.++
T Consensus 73 v~~vi~~l~~~L~~g~iiI 91 (298)
T PRK12490 73 TESVLKDLYPLLSPGDIVI 91 (298)
T ss_pred HHHHHHHHHHHCCCCCEEE
T ss_conf 9999996885269998885
No 425
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=89.53 E-value=0.47 Score=27.18 Aligned_cols=35 Identities=34% Similarity=0.378 Sum_probs=27.9
Q ss_pred CCCHHHCCEEEECCC-HH-HHHHHHHHCCCCEEEECC
Q ss_conf 588001628885698-56-999999731981699521
Q gi|254780872|r 62 THPFKGLRILDLGCG-GG-LLSEPMAQMGATVTGIDP 96 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG-~G-~~s~~la~~g~~V~giD~ 96 (254)
..|..|++||=+|-| .| .+|.+|..-|+.|+|||=
T Consensus 396 p~~~tg~~VLVvGlGPAG~tLsH~Lln~Gh~Vv~IDG 432 (1048)
T PRK06567 396 PKEPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDG 432 (1048)
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECC
T ss_conf 8888996489992486520188998747872898654
No 426
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=89.48 E-value=1.9 Score=23.48 Aligned_cols=91 Identities=25% Similarity=0.332 Sum_probs=57.3
Q ss_pred CCEEEECCC--HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCC--C----CCCCCCCCCCHHHHEECC
Q ss_conf 628885698--56999999731981699521356778888653101121111221--0----012321115301300124
Q gi|254780872|r 68 LRILDLGCG--GGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVS--C----AEEIAETDEKFDIILNME 139 (254)
Q Consensus 68 ~~VLDiGCG--~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~--~----~~~l~~~~~~FD~V~~~~ 139 (254)
++|+=+||| +|+++..|++.|..|+.+--++. ++.- ++.++.+.-..+ . ...-+.....+|+|+..
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l----~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~- 74 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEAL----KKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVT- 74 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECHHH-HHHH----HHCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE-
T ss_conf 9599987878999999999858995799810899-9999----878979981688522443235673336788889998-
Q ss_pred CHHCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 310268888998888752133321577
Q gi|254780872|r 140 VIEHVDNIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 140 vleHv~d~~~~l~~~~~~LkpgG~lii 166 (254)
| --.+...+++.+...++|+..+++
T Consensus 75 v--Ka~q~~~al~~l~~~~~~~t~vl~ 99 (307)
T COG1893 75 V--KAYQLEEALPSLAPLLGPNTVVLF 99 (307)
T ss_pred E--CCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 0--422389999998730799848999
No 427
>PRK08251 short chain dehydrogenase; Provisional
Probab=89.48 E-value=0.71 Score=26.09 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=44.7
Q ss_pred HCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCC--CCCCCCCCCCCCCC----------CCCCCC
Q ss_conf 1628885698569---99999731981699521356778888653101--12111122100123----------211153
Q gi|254780872|r 67 GLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMK--NINIDYRVSCAEEI----------AETDEK 131 (254)
Q Consensus 67 g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~--~~~i~~~~~~~~~l----------~~~~~~ 131 (254)
.++||=.|++.|+ +++.+++.|++|..++-.++.++..+...... +.++.+...|+.+. ...-+.
T Consensus 2 ~K~vlITGAssGIG~alA~~la~~G~~v~l~~r~~~~l~~~~~el~~~~~~~~v~~~~~Dvsd~~~v~~~~~~~~~~~g~ 81 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFSDELGG 81 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99899947863999999999998799899998988899999999987379973999978678689999999999998099
Q ss_pred HHHHEEC
Q ss_conf 0130012
Q gi|254780872|r 132 FDIILNM 138 (254)
Q Consensus 132 FD~V~~~ 138 (254)
.|++++.
T Consensus 82 iD~lvnN 88 (248)
T PRK08251 82 LDRVIVN 88 (248)
T ss_pred CCEEEEC
T ss_conf 9899985
No 428
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.36 E-value=0.75 Score=25.93 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=37.9
Q ss_pred HHHCCEEEECCCHHH---HHHHHHHCCCCEEEE-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 001628885698569---999997319816995-213567788886531011211112210012
Q gi|254780872|r 65 FKGLRILDLGCGGGL---LSEPMAQMGATVTGI-DPSTKNIAIAKNHANMKNINIDYRVSCAEE 124 (254)
Q Consensus 65 l~g~~VLDiGCG~G~---~s~~la~~g~~V~gi-D~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~ 124 (254)
|+|+.+|=.|.+.|+ .++.|++.|++|.-. .-+++..+.+....+..+.++.+.+.|+.+
T Consensus 2 L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~d 65 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAKEGYDIAINYARSRKAAEETANEIEQLGRKALVVKANVGD 65 (250)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 8949899958766999999999998899899975999899999999999549958999847999
No 429
>PRK07776 consensus
Probab=89.36 E-value=0.62 Score=26.46 Aligned_cols=44 Identities=18% Similarity=0.303 Sum_probs=36.5
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHH
Q ss_conf 8001628885698569---9999973198169952135677888865
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNH 107 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~ 107 (254)
.|+|+.+|=.|.+.|+ .++.|++.|++|.-+|.+++.++.+...
T Consensus 5 ~L~gKv~lITG~~~GIG~aiA~~la~~Ga~V~i~~~~~~~l~~~~~~ 51 (252)
T PRK07776 5 DLTGRTAIVTGASRGIGLAIAQALAAAGANVVITARKQEALDEAAAQ 51 (252)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
T ss_conf 99999899947787999999999998799899997988999999998
No 430
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=89.28 E-value=0.5 Score=27.02 Aligned_cols=40 Identities=23% Similarity=0.451 Sum_probs=33.0
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHH
Q ss_conf 88001628885698569---99999731981699521356778
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIA 102 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~ 102 (254)
..|+|+.+|=.|++.|+ .+..|++.|++|.++|.+.+.+.
T Consensus 4 ~~l~gK~alITG~s~GIG~aia~~la~~Ga~V~~~~r~~~~l~ 46 (253)
T PRK08220 4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAFEQLN 46 (253)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 8999998999588568999999999987999999978877874
No 431
>PRK07831 short chain dehydrogenase; Provisional
Probab=89.26 E-value=0.66 Score=26.29 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=33.1
Q ss_pred CHHHCCEEEECCC-HH---HHHHHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf 8001628885698-56---999999731981699521356778888
Q gi|254780872|r 64 PFKGLRILDLGCG-GG---LLSEPMAQMGATVTGIDPSTKNIAIAK 105 (254)
Q Consensus 64 ~l~g~~VLDiGCG-~G---~~s~~la~~g~~V~giD~S~~~i~~Ak 105 (254)
-|+|+++|=.|++ .| ..+..|++.|++|..+|.+++.+..+.
T Consensus 13 ~L~gKvalVTGgsg~GIG~a~a~~la~~Ga~V~i~d~~~~~~~e~~ 58 (261)
T PRK07831 13 LLAGKVVVVTAAAGTGIGSATARRALEEGADVVISDIHERRLGETA 58 (261)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 4699849994999647899999999987998999808777789999
No 432
>PRK08643 acetoin reductase; Validated
Probab=89.23 E-value=0.73 Score=25.99 Aligned_cols=102 Identities=13% Similarity=0.179 Sum_probs=56.9
Q ss_pred HCCEEEECCCHH---HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC----------CCCCCCHH
Q ss_conf 162888569856---99999973198169952135677888865310112111122100123----------21115301
Q gi|254780872|r 67 GLRILDLGCGGG---LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEI----------AETDEKFD 133 (254)
Q Consensus 67 g~~VLDiGCG~G---~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l----------~~~~~~FD 133 (254)
+|-+|=.|.+.| ..++.|++.|++|.-+|.+++.++.+....+..+.+......|+.+. ...-+..|
T Consensus 2 nKvalVTGg~~GIG~aia~~la~~Ga~V~i~d~~~~~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iD 81 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAKAAADKLSSDGGKAIAVKADVSNRDQVFDAVQQVVDTFGDLN 81 (256)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 84999957578899999999998799999996988999999999985399099998058999999999999999829987
Q ss_pred HHEECC-C-----HHCCCC-------------HHHHHHHHHHHCCC---CCEEE-EEC
Q ss_conf 300124-3-----102688-------------88998888752133---32157-743
Q gi|254780872|r 134 IILNME-V-----IEHVDN-------------IPYFIKTCCSLLLS---NGLMF-IST 168 (254)
Q Consensus 134 ~V~~~~-v-----leHv~d-------------~~~~l~~~~~~Lkp---gG~li-ist 168 (254)
+++..- + ++.+++ +-.+.+.+.+.++. ||.++ ++.
T Consensus 82 iLVNnAG~~~~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~~~m~~~~~~G~IVnisS 139 (256)
T PRK08643 82 VVVNNAGLAPTTPIDTITEEQFKKVYGINVGGVIWGIQAAQEQFKKLGHGGKIINATS 139 (256)
T ss_pred EEEECCCCCCCCCHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 9998998899988255999999999999763689999999999998289927999832
No 433
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=89.19 E-value=2 Score=23.35 Aligned_cols=94 Identities=22% Similarity=0.257 Sum_probs=48.4
Q ss_pred CCEEEECCC-HH-HHHHHHHHCCCCEEEECCHHHHHHHHH-HHHHCCC-CCCCCC--CCCCCCCCCCCCCHHHHEECCCH
Q ss_conf 628885698-56-999999731981699521356778888-6531011-211112--21001232111530130012431
Q gi|254780872|r 68 LRILDLGCG-GG-LLSEPMAQMGATVTGIDPSTKNIAIAK-NHANMKN-INIDYR--VSCAEEIAETDEKFDIILNMEVI 141 (254)
Q Consensus 68 ~~VLDiGCG-~G-~~s~~la~~g~~V~giD~S~~~i~~Ak-~~a~~~~-~~i~~~--~~~~~~l~~~~~~FD~V~~~~vl 141 (254)
+||.=||+| .| .++..|++.|.+|+-.+.+++.++.-+ .|..... .++.+- .....++...-+..|+|+..
T Consensus 1 kKI~IiGaG~wGtAla~~la~n~~~V~l~~r~~~~~~~i~~~~~n~~~lp~~~l~~~i~~~~dl~~a~~~adiIiia--- 77 (159)
T pfam01210 1 KKIAVLGAGSWGTALAKVLARNGHEVRLWGRDEELIEEINTTRENVKYLPGIKLPDNLRATTDLEEAIKGADIIVLA--- 77 (159)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHCCCCCHHCCCCCCCCCEEECCCHHHHHHCCCEEEEE---
T ss_conf 98999996999999999999879989999904366677886697821047864555305428899998379899991---
Q ss_pred HCCC--CHHHHHHHHHHHCCCCCEEEE
Q ss_conf 0268--888998888752133321577
Q gi|254780872|r 142 EHVD--NIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 142 eHv~--d~~~~l~~~~~~LkpgG~lii 166 (254)
+| ....+++++...++++-.++.
T Consensus 78 --vps~~~~~~~~~i~~~~~~~~~iv~ 102 (159)
T pfam01210 78 --VPSQALREVLKQLKGLLSPGAILVS 102 (159)
T ss_pred --CCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf --7488999999999865576556888
No 434
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.09 E-value=0.7 Score=26.12 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=38.6
Q ss_pred CCCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHH--HHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 588001628885698569---99999731981699521356--77888865310112111122100
Q gi|254780872|r 62 THPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTK--NIAIAKNHANMKNINIDYRVSCA 122 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~--~i~~Ak~~a~~~~~~i~~~~~~~ 122 (254)
...|+|+.+|=-|.|.|+ .+..|++.|++|...|.+.. .-+.++. ....+.++.+..+|+
T Consensus 4 ~~dL~GKvalVTGas~GIGraiA~~lA~~GA~Vvi~d~~~~~~~~~~~~e-i~~~G~~~~~~~~Dv 68 (303)
T PRK07792 4 TTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDIASALDASDVLDE-IRAAGAKAVAVAGDI 68 (303)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH-HHHCCCCEEEEECCC
T ss_conf 75689998999288668999999999986999999718972479999999-984499389996676
No 435
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.09 E-value=1.1 Score=24.93 Aligned_cols=41 Identities=29% Similarity=0.433 Sum_probs=34.9
Q ss_pred CCCCCCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHH
Q ss_conf 444588001628885698569---99999731981699521356
Q gi|254780872|r 59 SDDTHPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTK 99 (254)
Q Consensus 59 ~~~~~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~ 99 (254)
.+..+||+|+.+|=-|.+.|+ .++.|++.|++|+++|+...
T Consensus 199 ~~~~~pL~GKVALVTGAArGIG~AIA~~LAreGA~VVi~Di~~a 242 (447)
T PRK08261 199 ADWDRPLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPQA 242 (447)
T ss_pred CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 88788899998999172578999999999986999999827114
No 436
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=89.07 E-value=0.67 Score=26.22 Aligned_cols=44 Identities=30% Similarity=0.368 Sum_probs=35.7
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf 88001628885698569---999997319816995213567788886
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKN 106 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~ 106 (254)
..|+|+.+|=-|.+.|+ .++.|++.|++|...|.+++.++.+..
T Consensus 5 f~L~gK~alVTG~s~GIG~aiA~~la~~Ga~Vvi~~r~~~~l~~~~~ 51 (251)
T PRK07523 5 FDLTGRRALITGSSQGIGYALAKGLAQAGAEVILNGRDAAKLAAAAE 51 (251)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
T ss_conf 26899989995836699999999999879999999699899999999
No 437
>PRK05717 oxidoreductase; Validated
Probab=89.04 E-value=0.72 Score=26.04 Aligned_cols=43 Identities=19% Similarity=0.125 Sum_probs=34.4
Q ss_pred CCCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHH
Q ss_conf 588001628885698569---9999973198169952135677888
Q gi|254780872|r 62 THPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIA 104 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~A 104 (254)
...|+|+.+|=.|.+.|+ .++.|++.|++|+..|.+++-.+..
T Consensus 5 ~~~l~GKvalITG~s~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~ 50 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGAKV 50 (255)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf 6899998899958788899999999998799899996988999999
No 438
>PRK12746 short chain dehydrogenase; Provisional
Probab=89.02 E-value=0.81 Score=25.74 Aligned_cols=106 Identities=17% Similarity=0.184 Sum_probs=60.3
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEE-ECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC----------
Q ss_conf 88001628885698569---99999731981699-52135677888865310112111122100123211----------
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTG-IDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAET---------- 128 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~g-iD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~---------- 128 (254)
..|+|+.+|=.|++.|+ .+..|++.|++|.- .+.+++..+.+....+..+.++.+...|+.+....
T Consensus 2 ~~l~gKvalITGga~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 81 (254)
T PRK12746 2 KNLDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKAAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNE 81 (254)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 69999889994847689999999999879999996599989999999999855992899975779999999999999999
Q ss_pred ------CCCHHHHEECC-------CHHCC------------CCHHHHHHHHHHHCCCCCEEE-EEC
Q ss_conf ------15301300124-------31026------------888899888875213332157-743
Q gi|254780872|r 129 ------DEKFDIILNME-------VIEHV------------DNIPYFIKTCCSLLLSNGLMF-IST 168 (254)
Q Consensus 129 ------~~~FD~V~~~~-------vleHv------------~d~~~~l~~~~~~LkpgG~li-ist 168 (254)
.+..|+++... +.++- .-+-.+.+.+.++++.+|.++ +++
T Consensus 82 ~~~~~g~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~f~~~k~~~p~m~~~G~IVnisS 147 (254)
T PRK12746 82 LQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISS 147 (254)
T ss_pred HHHHCCCCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 866416898518997997889999144999999999998534689999999999861696699924
No 439
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=88.88 E-value=0.92 Score=25.39 Aligned_cols=61 Identities=13% Similarity=0.104 Sum_probs=38.6
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEE-CCHHHHHHHHHHHH-HCCCCCCCCCCCCCC
Q ss_conf 88001628885698569---999997319816995-21356778888653-101121111221001
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGI-DPSTKNIAIAKNHA-NMKNINIDYRVSCAE 123 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~gi-D~S~~~i~~Ak~~a-~~~~~~i~~~~~~~~ 123 (254)
..|+|+.+|=.|.+.|+ .++.|++.|++|.-+ +.+++..+...... ...+.++.+...|+.
T Consensus 4 ~~L~gK~alVTGgs~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~g~~~~~~~~Dv~ 69 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEADKIAQDLEKKYGIKARAYPLNIL 69 (260)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 778999899967340999999999998799999985998899999999998841983699977889
No 440
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=88.76 E-value=0.54 Score=26.83 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=31.7
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHH
Q ss_conf 88001628885698569---999997319816995213567
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKN 100 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~ 100 (254)
-.|+|+.+|=-|.+.|+ .++.|++.|++|..+|.++..
T Consensus 5 ~~L~gKvalVTGgs~GIG~aia~~la~~Ga~V~~~d~~~~~ 45 (266)
T PRK06171 5 LNLQGKIIIVTGGSSGIGLAIVEELLAQGANVQMVDIHGGD 45 (266)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 38999979994778789999999999879999999788535
No 441
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase; InterPro: IPR011294 This entry represents a subfamily of the short chain dehydrogenases. Characterised members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polymers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.; GO: 0003858 3-hydroxybutyrate dehydrogenase activity.
Probab=88.71 E-value=0.82 Score=25.68 Aligned_cols=90 Identities=22% Similarity=0.259 Sum_probs=55.5
Q ss_pred CCEEEECCCHHH---HHHHHHHCCCCEEEECCH--HHHHHHHHHHHHCCCCCCCCCCC----------------------
Q ss_conf 628885698569---999997319816995213--56778888653101121111221----------------------
Q gi|254780872|r 68 LRILDLGCGGGL---LSEPMAQMGATVTGIDPS--TKNIAIAKNHANMKNINIDYRVS---------------------- 120 (254)
Q Consensus 68 ~~VLDiGCG~G~---~s~~la~~g~~V~giD~S--~~~i~~Ak~~a~~~~~~i~~~~~---------------------- 120 (254)
+.+|=-|..+|+ .+..||+.|++|.-.|.. ++..+.+...+...+.++.|...
T Consensus 2 ktalVTGaaSGIG~~iA~~LA~aGa~v~~~d~~~~~~~~~~~~~~~~~~G~~v~~~~~D~T~~~e~~~~~~~~~~~fG~~ 81 (258)
T TIGR01963 2 KTALVTGAASGIGLAIAKALAAAGANVVVNDLGEADEGAEAAAKVATDAGGSVIYLVADVTKEEEIADMIQAVAAEFGGL 81 (258)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 48999658716789999999872988998467887899999999999618835775147888899999999999985688
Q ss_pred -------------CCCCCCCCCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCE
Q ss_conf -------------0012321115301300124310268888998888752133321
Q gi|254780872|r 121 -------------CAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGL 163 (254)
Q Consensus 121 -------------~~~~l~~~~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~ 163 (254)
.+|++|. ++||.|+.. ++.-+-..++.....+|..|+
T Consensus 82 DiLVNNAG~QhVaPiEeFP~--~~w~~iiav----~LtsaF~t~raAlP~Mk~~gw 131 (258)
T TIGR01963 82 DILVNNAGIQHVAPIEEFPP--EKWDRIIAV----MLTSAFHTIRAALPHMKKQGW 131 (258)
T ss_pred CEEEECCCEEECCCCCCCCH--HHHHHHHHH----CCCHHHHHHHHCCCCCCCCCC
T ss_conf 74884464014176547786--678737302----168889999750643213785
No 442
>PRK07775 short chain dehydrogenase; Provisional
Probab=88.64 E-value=1.1 Score=24.79 Aligned_cols=59 Identities=8% Similarity=-0.089 Sum_probs=40.1
Q ss_pred HHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 001628885698569---99999731981699521356778888653101121111221001
Q gi|254780872|r 65 FKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAE 123 (254)
Q Consensus 65 l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~ 123 (254)
+.++.+|=.|.++|+ .+..|++.|++|..++-+.+-++.........+..+.....|+.
T Consensus 8 ~~~KtAlVTGAssGIG~aiA~~la~~G~~V~l~~R~~e~l~~~~~~l~~~g~~~~~~~~Dvt 69 (275)
T PRK07775 8 PARRPAIVAGASSGIGAATAIELAAHGFPVALGARRVEKCEEIVDKIRADGGEAVAFPLDVT 69 (275)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 99997999462359999999999987998999989899999999999964994899991289
No 443
>PRK12828 short chain dehydrogenase; Provisional
Probab=88.43 E-value=0.82 Score=25.69 Aligned_cols=43 Identities=26% Similarity=0.278 Sum_probs=34.9
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf 88001628885698569---99999731981699521356778888
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAK 105 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak 105 (254)
..|+|+.+|=-|++.|+ .++.|++.|++|..+|.+.+-++.+.
T Consensus 3 ~~L~gKvalITGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~ 48 (239)
T PRK12828 3 HSLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTL 48 (239)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 9969898999472548999999999987998999979877899999
No 444
>PRK07825 short chain dehydrogenase; Provisional
Probab=88.41 E-value=0.81 Score=25.72 Aligned_cols=42 Identities=21% Similarity=0.209 Sum_probs=35.3
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf 8001628885698569---99999731981699521356778888
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAK 105 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak 105 (254)
.++|+.||=-|++.|+ +++.|++.|++|...|.+++.++.+.
T Consensus 2 dl~gKvvlITGassGIG~a~A~~la~~Ga~V~i~~r~~~~l~~~~ 46 (273)
T PRK07825 2 NLRGKVIAITGGARGIGLATARALAALGAKVAIGDLDEALAKESA 46 (273)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 999988999262339999999999987998999979999999999
No 445
>PRK12742 oxidoreductase; Provisional
Probab=88.14 E-value=2.3 Score=22.91 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=51.3
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCC-CCCCCCCCC---CCCCCCCCHHHH
Q ss_conf 88001628885698569---99999731981699521356778888653101121-111221001---232111530130
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNIN-IDYRVSCAE---EIAETDEKFDII 135 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~-i~~~~~~~~---~l~~~~~~FD~V 135 (254)
..|+|+++|=.|++.|+ .++.|++.|++|.-..-+.. +.++.-..+.+.. +.....+.+ +.....+..|++
T Consensus 2 ~~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~g~iD~l 79 (237)
T PRK12742 2 GAFTGKSVLVLGGSRGIGAAIVRRFVTDGANVVFTYAGSK--DAAERLAAETGATAVFTDSADRDAVIDVVRKSGPLDIL 79 (237)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCH--HHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHCCCCEE
T ss_conf 9989998999278879999999999987999999779998--99999988639828993545899999999986999899
Q ss_pred EECCCHH-------------------CCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 0124310-------------------268888998888752133321577
Q gi|254780872|r 136 LNMEVIE-------------------HVDNIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 136 ~~~~vle-------------------Hv~d~~~~l~~~~~~LkpgG~lii 166 (254)
+...-.. ++.-+-...+...+.++++|.+++
T Consensus 80 VnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~G~ii~ 129 (237)
T PRK12742 80 VVNAGIALFGDALELDADAIDRLFKINIHAPYHASVEAARQMPEGGRILI 129 (237)
T ss_pred EECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 98997789998134999999999987506799999999997123785999
No 446
>PRK07041 short chain dehydrogenase; Provisional
Probab=88.09 E-value=0.98 Score=25.22 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=47.0
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCC------CCCCCCCCHHH
Q ss_conf 8001628885698569---99999731981699521356778888653101121111221001------23211153013
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAE------EIAETDEKFDI 134 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~------~l~~~~~~FD~ 134 (254)
.|+|+.+|=.|.+.|+ .+..|++.|++|..+|.+++.++.+..... ...++.+...|+. .+...-+.+|.
T Consensus 4 ~l~gK~~lITGgs~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~g~~d~ 82 (240)
T PRK07041 4 SLNDQKVLVVGGSSGIGLAAARAFAARGADVTIASRSRERLAAAARALG-GPRPVRTAALDITDEAAVDAFFAEAGPFDH 82 (240)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHHCCCCE
T ss_conf 8599989995778889999999999879999999598899999999847-888669998479999999999997098788
Q ss_pred HEEC
Q ss_conf 0012
Q gi|254780872|r 135 ILNM 138 (254)
Q Consensus 135 V~~~ 138 (254)
+++.
T Consensus 83 lv~n 86 (240)
T PRK07041 83 VVIT 86 (240)
T ss_pred EEEC
T ss_conf 9982
No 447
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=88.09 E-value=0.85 Score=25.61 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=39.0
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 8001628885698569---999997319816995213567788886531011211112210012
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~ 124 (254)
.|+|+.+|=.|.+.|+ .++.|++.|++|.-.|.+.+.++.... +.+.++.+...|+.+
T Consensus 3 ~l~gK~alITG~s~GIG~aia~~~a~~Ga~V~i~~~~~~~~~~~~~---~~~~~~~~~~~Dv~~ 63 (245)
T PRK12936 3 DLTGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAA---ELGERVKIFPANLSD 63 (245)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---HHCCCEEEEECCCCC
T ss_conf 8899989992747689999999999869999998299999999999---838966999913799
No 448
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=88.08 E-value=1.4 Score=24.28 Aligned_cols=45 Identities=27% Similarity=0.342 Sum_probs=36.5
Q ss_pred CCCHHHCCEEEECCC-HH-HHHHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf 588001628885698-56-9999997319816995213567788886
Q gi|254780872|r 62 THPFKGLRILDLGCG-GG-LLSEPMAQMGATVTGIDPSTKNIAIAKN 106 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG-~G-~~s~~la~~g~~V~giD~S~~~i~~Ak~ 106 (254)
...|+|++|.=-|+| .| ..+..|.+.|++|++.|+++..+..+..
T Consensus 23 ~~~l~gk~VaIqG~GnVG~~~A~~l~~~Gakvvv~d~~~~~~~~~~~ 69 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAE 69 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
T ss_conf 99878999999898799999999999679979998268899999985
No 449
>PRK11430 hypothetical protein; Provisional
Probab=88.02 E-value=0.89 Score=25.47 Aligned_cols=35 Identities=31% Similarity=0.651 Sum_probs=17.5
Q ss_pred CCCHHHCCEEEECCC-HH-HHHHHHHHCCCCEEEECC
Q ss_conf 588001628885698-56-999999731981699521
Q gi|254780872|r 62 THPFKGLRILDLGCG-GG-LLSEPMAQMGATVTGIDP 96 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG-~G-~~s~~la~~g~~V~giD~ 96 (254)
..||+|.+|||++-. .| +-+..||.+||+|+=|++
T Consensus 7 ~gPL~GirVld~~~~~agP~a~~~LadlGA~VIKVE~ 43 (381)
T PRK11430 7 KGPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEP 43 (381)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHHHCCEEEEECC
T ss_conf 9899999899837745899999999980996999888
No 450
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=87.96 E-value=1.1 Score=24.89 Aligned_cols=61 Identities=10% Similarity=-0.042 Sum_probs=39.5
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECC-HHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 8001628885698569---99999731981699521-3567788886531011211112210012
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDP-STKNIAIAKNHANMKNINIDYRVSCAEE 124 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~-S~~~i~~Ak~~a~~~~~~i~~~~~~~~~ 124 (254)
.|+|+.+|=.|.+.|+ .++.|++.|++|.-.+. ++..++.+....++.+.++.+.+.|+.+
T Consensus 4 ~L~gKvalVTGa~~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~ 68 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDESEANDVAEEIKKVGGEAIAVKGDVTV 68 (261)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 89999899968477899999999998799999972898789999999999659938999827999
No 451
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.73 E-value=0.94 Score=25.32 Aligned_cols=102 Identities=14% Similarity=0.147 Sum_probs=57.3
Q ss_pred HHHCCEEEECCCHHH---HHHHHHHCCCCEEE-ECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------CCCC
Q ss_conf 001628885698569---99999731981699-521356778888653101121111221001232----------1115
Q gi|254780872|r 65 FKGLRILDLGCGGGL---LSEPMAQMGATVTG-IDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA----------ETDE 130 (254)
Q Consensus 65 l~g~~VLDiGCG~G~---~s~~la~~g~~V~g-iD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~----------~~~~ 130 (254)
|+|+.+|=-|.+.|+ .+..|++.|++|.- .+-+.+..+.+....++.+.+..+...|+.+.. ..-+
T Consensus 1 L~gKvalITGgs~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 80 (249)
T PRK06077 1 LKDKVVVVTGSGRGIGRAIAVRLAKEGAKVVVNAKKRAEEMNETLRMVKEYGGEGIGVLADVSTREGCRTLAKAALDNFG 80 (249)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 96198999263678999999999987998999848876899999999997599589998479999999999999999819
Q ss_pred CHHHHEECC------CHHCCC-------------CHHHHHHHHHHHCCCCCEEEE
Q ss_conf 301300124------310268-------------888998888752133321577
Q gi|254780872|r 131 KFDIILNME------VIEHVD-------------NIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 131 ~FD~V~~~~------vleHv~-------------d~~~~l~~~~~~LkpgG~lii 166 (254)
..|++++.- .++.++ -+-.+.+++.+.++.+|.++.
T Consensus 81 ~iDiLVnNAG~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~m~~~G~IIn 135 (249)
T PRK06077 81 VVDILVNNAGLGLFSPFLNADDRLIEKHISTDLKSVIYCSQEAAKVMREGGEIIN 135 (249)
T ss_pred CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 9888998577578875010999999999988621899999999999616978998
No 452
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=87.61 E-value=0.93 Score=25.34 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=5.9
Q ss_pred HHHHHHHHHCCCE
Q ss_conf 9999999986983
Q gi|254780872|r 204 TEMECFLAANKVK 216 (254)
Q Consensus 204 ~el~~~l~~~g~~ 216 (254)
+|+.+.|+++|.-
T Consensus 306 ~e~~~~l~~~~vp 318 (405)
T PRK03525 306 AEVKARFAELNIA 318 (405)
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999875998
No 453
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase; InterPro: IPR012773 Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (2.6.1.76 from EC) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (Q9Z3R2 from SWISSPROT) or 1,3-diaminopropane (P44951 from SWISSPROT) biosynthesis. Ectoine is a compatible solute particularly effective in conferring salt tolerance.; GO: 0030170 pyridoxal phosphate binding, 0047307 diaminobutyrate-pyruvate transaminase activity, 0019491 ectoine biosynthetic process.
Probab=87.43 E-value=0.36 Score=27.90 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=27.5
Q ss_pred HHHHHHHHCCCCCCCCCCHHHCCEEEECCC-HHHHHHHHHH-------CCCCE-----EEECCHHHHHHHHHHHHHCC
Q ss_conf 999988651876444588001628885698-5699999973-------19816-----99521356778888653101
Q gi|254780872|r 47 IQDKIMQHFQCKSDDTHPFKGLRILDLGCG-GGLLSEPMAQ-------MGATV-----TGIDPSTKNIAIAKNHANMK 111 (254)
Q Consensus 47 I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG-~G~~s~~la~-------~g~~V-----~giD~S~~~i~~Ak~~a~~~ 111 (254)
|++++...+...-.. .=||.+.- -..|.+.+.+ +.++| ||.-.-|.+|+.||+.-...
T Consensus 56 ~K~~L~~Yl~~DGI~-------hsLDM~T~AK~~Fl~~F~~~IL~PR~LdYK~qFpGPTGTNaVEsAlKLARKvtGR~ 126 (413)
T TIGR02407 56 LKQALIDYLADDGII-------HSLDMATEAKREFLETFQEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTGRS 126 (413)
T ss_pred HHHHHHHHHHHCCCE-------EEECCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 999999999858933-------62002417899999999985267887895156888786407999999985038984
No 454
>KOG4589 consensus
Probab=87.40 E-value=0.93 Score=25.35 Aligned_cols=33 Identities=27% Similarity=0.296 Sum_probs=25.6
Q ss_pred HHCCEEEECCCHHHHHHHHHHC---CCCEEEECCHH
Q ss_conf 0162888569856999999731---98169952135
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM---GATVTGIDPST 98 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~---g~~V~giD~S~ 98 (254)
++.+|||+||..|..+.-..++ ...|.|||+-.
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh 104 (232)
T KOG4589 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH 104 (232)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 887799816788718999988628874288874331
No 455
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=87.32 E-value=2 Score=23.22 Aligned_cols=91 Identities=18% Similarity=0.281 Sum_probs=56.9
Q ss_pred CCCCHHHCCEEEECCCH-H-HHHHHHHHCCCCE-EEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEE
Q ss_conf 45880016288856985-6-9999997319816-9952135677888865310112111122100123211153013001
Q gi|254780872|r 61 DTHPFKGLRILDLGCGG-G-LLSEPMAQMGATV-TGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILN 137 (254)
Q Consensus 61 ~~~~l~g~~VLDiGCG~-G-~~s~~la~~g~~V-~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~ 137 (254)
...+++|++|.=||||+ | ..+..|...|.+| +|+-.....-+ +|.+.+.++ .++++.. ..-|+|..
T Consensus 12 ~l~~LkgK~iaIIGYGsQG~ahalNlRDSGlnViiGlr~g~~s~~----kA~~dGf~V----~~v~ea~---k~ADvim~ 80 (338)
T COG0059 12 DLDLLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWK----KAKEDGFKV----YTVEEAA---KRADVVMI 80 (338)
T ss_pred CHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCHHHH----HHHHCCCEE----ECHHHHH---HCCCEEEE
T ss_conf 745654986999902708788874224248747998568872489----999669775----1399985---22799998
Q ss_pred CCCHHCCCCH--HHHH-HHHHHHCCCCCEEEEE
Q ss_conf 2431026888--8998-8887521333215774
Q gi|254780872|r 138 MEVIEHVDNI--PYFI-KTCCSLLLSNGLMFIS 167 (254)
Q Consensus 138 ~~vleHv~d~--~~~l-~~~~~~LkpgG~liis 167 (254)
+ +||- ..+. +++...|+.|-.|.|+
T Consensus 81 L-----~PDe~q~~vy~~~I~p~Lk~G~aL~Fa 108 (338)
T COG0059 81 L-----LPDEQQKEVYEKEIAPNLKEGAALGFA 108 (338)
T ss_pred E-----CCHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 1-----865467899998743452278667762
No 456
>KOG2539 consensus
Probab=87.30 E-value=1.7 Score=23.66 Aligned_cols=99 Identities=10% Similarity=0.062 Sum_probs=56.5
Q ss_pred CCEEEECCCHHH--HHHH-HHHC-CCCEEEECCHHHHHHHHHHHHHCCCCCCC--CCCC--CCC-CCCCCC-CCHHHHEE
Q ss_conf 628885698569--9999-9731-98169952135677888865310112111--1221--001-232111-53013001
Q gi|254780872|r 68 LRILDLGCGGGL--LSEP-MAQM-GATVTGIDPSTKNIAIAKNHANMKNINID--YRVS--CAE-EIAETD-EKFDIILN 137 (254)
Q Consensus 68 ~~VLDiGCG~G~--~s~~-la~~-g~~V~giD~S~~~i~~Ak~~a~~~~~~i~--~~~~--~~~-~l~~~~-~~FD~V~~ 137 (254)
..++|+|.|.|. .+.. +-+. -..++-||.|..|...+....+. +-.+. +... ..+ .+|... +.||+|+|
T Consensus 202 d~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539 202 DLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred HHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCC-HHHCCCHHCCCCCHHCCCCCCCCCCCEEEEEE
T ss_conf 79999874315551035343002122067632555888888876247-33327502155320101278885553236886
Q ss_pred CCCHHCCCCHHH---HH-HHHHHHCCCCCEEEEE
Q ss_conf 243102688889---98-8887521333215774
Q gi|254780872|r 138 MEVIEHVDNIPY---FI-KTCCSLLLSNGLMFIS 167 (254)
Q Consensus 138 ~~vleHv~d~~~---~l-~~~~~~LkpgG~liis 167 (254)
..+++|...+.. .. +-..+...+||.+++-
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViI 314 (491)
T KOG2539 281 AHKLHELGSKFSRLDVPESLWRKTDRSGYFLVII 314 (491)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 6343014782046563699998606877417998
No 457
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.25 E-value=0.57 Score=26.65 Aligned_cols=36 Identities=31% Similarity=0.489 Sum_probs=30.4
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHH
Q ss_conf 8001628885698569---99999731981699521356
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTK 99 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~ 99 (254)
.|+|+.+|=-|++.|+ .++.|++.|++|.++|.++.
T Consensus 2 dl~gK~alVTGas~GIG~aia~~~a~~Ga~V~~~d~~~~ 40 (237)
T PRK06550 2 EFMTKTVLVTGAASGIGLAQARAFLEQGAHVYGVDKSDK 40 (237)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 989989999374779999999999987999999708612
No 458
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=87.11 E-value=0.96 Score=25.26 Aligned_cols=97 Identities=15% Similarity=0.288 Sum_probs=63.8
Q ss_pred CCEEEECCCHH----HHHHHHHHCC--CCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCH-HH
Q ss_conf 62888569856----9999997319--81699521356778888653101121111221001232------111530-13
Q gi|254780872|r 68 LRILDLGCGGG----LLSEPMAQMG--ATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA------ETDEKF-DI 134 (254)
Q Consensus 68 ~~VLDiGCG~G----~~s~~la~~g--~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~------~~~~~F-D~ 134 (254)
.-|+|+|.-.| .++..+...| ++|+|+|++-..++-+-. .-..|.|..++..+.. ...+-+ -+
T Consensus 71 ~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~----e~p~i~f~egss~dpai~eqi~~~~~~y~kI 146 (237)
T COG3510 71 SLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAR----EVPDILFIEGSSTDPAIAEQIRRLKNEYPKI 146 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH----CCCCEEEEECCCCCHHHHHHHHHHHCCCCCE
T ss_conf 506764232574011206769864997328997456675886563----1797389837988878999999974579967
Q ss_pred HEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 0012431026888899888875213332157743
Q gi|254780872|r 135 ILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 135 V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist 168 (254)
-+|.+.-||.....+.|+-...+|--|-++++..
T Consensus 147 fvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 147 FVILDSDHSMEHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9996487509999999997606764375699963
No 459
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.11 E-value=1.2 Score=24.63 Aligned_cols=41 Identities=10% Similarity=0.132 Sum_probs=29.9
Q ss_pred CHHHCCEEEECCCH--H---HHHHHHHHCCCCEEEECCHHHHHHHH
Q ss_conf 80016288856985--6---99999973198169952135677888
Q gi|254780872|r 64 PFKGLRILDLGCGG--G---LLSEPMAQMGATVTGIDPSTKNIAIA 104 (254)
Q Consensus 64 ~l~g~~VLDiGCG~--G---~~s~~la~~g~~V~giD~S~~~i~~A 104 (254)
.|+|+.+|=.|+++ | ..+..|++.|++|.-.+.++...+.+
T Consensus 3 ~L~gK~~lVTGaag~rGIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~ 48 (256)
T PRK08594 3 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEV 48 (256)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHH
T ss_conf 9999889998999996399999999998799999974880669999
No 460
>PRK09134 short chain dehydrogenase; Provisional
Probab=87.05 E-value=1.3 Score=24.48 Aligned_cols=61 Identities=10% Similarity=-0.048 Sum_probs=39.0
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEE-EECCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 88001628885698569---9999973198169-9521356778888653101121111221001
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVT-GIDPSTKNIAIAKNHANMKNINIDYRVSCAE 123 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~-giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~ 123 (254)
..++++.+|=.|.+.|+ .++.|++.|++|. ..+-+.+-++......+..+.+..+.++|+.
T Consensus 5 ~~~~~KvalVTGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dl~ 69 (256)
T PRK09134 5 PMAAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLA 69 (256)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 89999979994886789999999999879989998499989999999999964991899975589
No 461
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=87.03 E-value=1 Score=25.09 Aligned_cols=61 Identities=16% Similarity=0.161 Sum_probs=39.1
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEE-ECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 8001628885698569---99999731981699-5213567788886531011211112210012
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTG-IDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~g-iD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~ 124 (254)
.|+|+.+|=-|.+.|+ .+..|++.|++|.- .+.+++..+.........+.++.+...|+.+
T Consensus 3 ~L~gKvalVTG~s~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~ 67 (247)
T PRK12935 3 QLNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSK 67 (247)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 88969899917276899999999998799899976999899999999998439958999857999
No 462
>PRK07102 short chain dehydrogenase; Provisional
Probab=87.03 E-value=1.3 Score=24.40 Aligned_cols=71 Identities=14% Similarity=0.095 Sum_probs=44.4
Q ss_pred CCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCC-------CCCCCHHHHE
Q ss_conf 628885698569---9999973198169952135677888865310-1121111221001232-------1115301300
Q gi|254780872|r 68 LRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANM-KNINIDYRVSCAEEIA-------ETDEKFDIIL 136 (254)
Q Consensus 68 ~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~-~~~~i~~~~~~~~~l~-------~~~~~FD~V~ 136 (254)
++||=.|++.|+ ++..+++.|++|..++-+++.++........ .+..+.+...|+.+.. ...+.+|+++
T Consensus 2 K~vlITGassGIG~a~A~~la~~G~~v~l~~R~~~~l~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~v 81 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDTERLERIAADLEARGAVAVATHELDILDTARHAAFLDNLPALPDTVL 81 (243)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEE
T ss_conf 97999157459999999999987998999989889999999999853586289984340369999999999875379799
Q ss_pred EC
Q ss_conf 12
Q gi|254780872|r 137 NM 138 (254)
Q Consensus 137 ~~ 138 (254)
+.
T Consensus 82 ~~ 83 (243)
T PRK07102 82 IA 83 (243)
T ss_pred EE
T ss_conf 97
No 463
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=86.97 E-value=1.4 Score=24.18 Aligned_cols=67 Identities=18% Similarity=0.133 Sum_probs=33.2
Q ss_pred HCCEEEECCC-HHH-HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC----CCCCHHHHEEC
Q ss_conf 1628885698-569-999997319816995213567788886531011211112210012321----11530130012
Q gi|254780872|r 67 GLRILDLGCG-GGL-LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAE----TDEKFDIILNM 138 (254)
Q Consensus 67 g~~VLDiGCG-~G~-~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~----~~~~FD~V~~~ 138 (254)
-++|+=+|.| .|. ++..| ..|.+|+-||.+++-.+.+.. .-.++...+++..+... .-+..|++++.
T Consensus 232 ~~~v~I~Ggg~ig~~la~~L-~~~~~v~iIe~d~~~~~~la~----~l~~~~Vi~GD~td~~~L~e~gi~~aD~~ia~ 304 (455)
T PRK09496 232 VKRIMIAGGGNIGLYLAKLL-EKGYSVKLIERDPERAEELAE----ELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (455)
T ss_pred CCEEEEECCCHHHHHHHHHH-HCCCEEEEECCCHHHHHHHHH----HCCCCEEEECCCCCHHHHHHHCCCCCCEEEEE
T ss_conf 65189987869999999987-408838997089899999997----47853999788768899976364556489990
No 464
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase; InterPro: IPR011548 3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators . 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterised 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate . HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase. ; GO: 0008442 3-hydroxyisobutyrate dehydrogenase activity, 0051287 NAD binding.
Probab=86.93 E-value=1.7 Score=23.70 Aligned_cols=88 Identities=24% Similarity=0.280 Sum_probs=52.5
Q ss_pred ECCC--HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECC-CHHCCCCHHH
Q ss_conf 5698--569999997319816995213567788886531011211112210012321115301300124-3102688889
Q gi|254780872|r 73 LGCG--GGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNME-VIEHVDNIPY 149 (254)
Q Consensus 73 iGCG--~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~-vleHv~d~~~ 149 (254)
||=| +|=.+..|.|.|++|...|++++.++.++ +.+..+ -.++ ...-+.-|+|+.+- .=.||...-.
T Consensus 2 IGLGNMGgPMA~NL~KAGH~v~~FDL~p~av~~~v----~aG~~~---A~S~---~~a~~~Ad~vITMLPAg~HV~sVY~ 71 (290)
T TIGR01692 2 IGLGNMGGPMAANLLKAGHAVRVFDLSPKAVEELV----EAGAQA---AASA---AEAAEGADVVITMLPAGKHVISVYS 71 (290)
T ss_pred CCCCCCCHHHHHHHHHHCCEEEEEECCHHHHHHHH----HCCHHC---CCCH---HHHHCCCCEEEECCCCCHHHHHHHH
T ss_conf 78888822799998611872577517889999999----600220---5457---9884558868634886034899983
Q ss_pred HHHHHHHHCCCCCEEE-EECCC
Q ss_conf 9888875213332157-74367
Q gi|254780872|r 150 FIKTCCSLLLSNGLMF-ISTIN 170 (254)
Q Consensus 150 ~l~~~~~~LkpgG~li-ist~N 170 (254)
.=+.|..-.+++-.|| .|||+
T Consensus 72 gd~gIL~~~~K~~LlIDcSTID 93 (290)
T TIGR01692 72 GDDGILAKVAKGSLLIDCSTID 93 (290)
T ss_pred CCHHHHCCCCCCCCEEECCCCC
T ss_conf 3133411367889633245678
No 465
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=86.92 E-value=1.3 Score=24.39 Aligned_cols=60 Identities=10% Similarity=-0.017 Sum_probs=39.1
Q ss_pred HHHCCEEEECCCHHH---HHHHHHHCCCCEE-EECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 001628885698569---9999973198169-95213567788886531011211112210012
Q gi|254780872|r 65 FKGLRILDLGCGGGL---LSEPMAQMGATVT-GIDPSTKNIAIAKNHANMKNINIDYRVSCAEE 124 (254)
Q Consensus 65 l~g~~VLDiGCG~G~---~s~~la~~g~~V~-giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~ 124 (254)
++|+.+|=-|.+.|+ .+..|++.|++|. ...-++..++......+..+.++.+.+.|+.+
T Consensus 4 ~~~KvalVTGa~~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~ 67 (252)
T PRK06947 4 SDRKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVAN 67 (252)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9990899938835899999999998799899980898789999999999649928999847999
No 466
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.90 E-value=1.2 Score=24.76 Aligned_cols=36 Identities=28% Similarity=0.597 Sum_probs=28.0
Q ss_pred HHHCCEEEECCC-HHH-HHHHHHHCCCCEEEECCHHHHH
Q ss_conf 001628885698-569-9999973198169952135677
Q gi|254780872|r 65 FKGLRILDLGCG-GGL-LSEPMAQMGATVTGIDPSTKNI 101 (254)
Q Consensus 65 l~g~~VLDiGCG-~G~-~s~~la~~g~~V~giD~S~~~i 101 (254)
++| |||=+|.| +|+ .+..|.+.|++|++.|-.+...
T Consensus 16 l~~-kvlV~GlG~SG~s~a~~L~~~G~~v~~~D~~~~~~ 53 (476)
T PRK00141 16 LRG-RVLVAGAGVSGLGIAKMLSELGCDVVVADDNETQR 53 (476)
T ss_pred HCC-CEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCHH
T ss_conf 699-88999227889999999997899799998998703
No 467
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.89 E-value=1.3 Score=24.42 Aligned_cols=49 Identities=16% Similarity=0.062 Sum_probs=34.3
Q ss_pred CHHHCCEEEEC--CCHH---HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 80016288856--9856---9999997319816995213567788886531011
Q gi|254780872|r 64 PFKGLRILDLG--CGGG---LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKN 112 (254)
Q Consensus 64 ~l~g~~VLDiG--CG~G---~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~ 112 (254)
-|+||++|=.| .+.| ..++.+++.|++|.-.+.++...+.+++-+.+.+
T Consensus 3 ~L~GK~~lVTG~a~~~GIG~aiA~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~g 56 (260)
T PRK06997 3 FLAGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG 56 (260)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCC
T ss_conf 899988999899887289999999999859999998088066999999998629
No 468
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=86.74 E-value=2.8 Score=22.41 Aligned_cols=96 Identities=18% Similarity=0.264 Sum_probs=55.8
Q ss_pred CCHHHCCEEEECCC-HH-HHHHHHHHCCC-CEEEECCHH-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEEC
Q ss_conf 88001628885698-56-99999973198-169952135-6778888653101121111221001232111530130012
Q gi|254780872|r 63 HPFKGLRILDLGCG-GG-LLSEPMAQMGA-TVTGIDPST-KNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNM 138 (254)
Q Consensus 63 ~~l~g~~VLDiGCG-~G-~~s~~la~~g~-~V~giD~S~-~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~ 138 (254)
..+.+++||=||.| .| ..+..|...|. +|+-+--+. .+.+.|+. -+. ...+.+++...-..+|+|++.
T Consensus 178 ~~l~~~~vlviGaGem~~l~~k~L~~~g~~~i~v~nRt~~ra~~la~~----~~~----~~~~~~~l~~~l~~~Dvvisa 249 (429)
T PRK00045 178 GDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEE----FGA----EAIPLEELPEALAEADIVISS 249 (429)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH----CCC----EEECHHHHHHHHHHCCEEEEE
T ss_conf 781206599976748999999999855998499975867789999997----598----897499999999658999994
Q ss_pred -CCHHCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf -43102688889988887521333215774
Q gi|254780872|r 139 -EVIEHVDNIPYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 139 -~vleHv~d~~~~l~~~~~~LkpgG~liis 167 (254)
..-+.+-.. ..++.+.+.-+....+++.
T Consensus 250 T~s~~~ii~~-~~~~~~~~~r~~~~~~iiD 278 (429)
T PRK00045 250 TAAPHPIITK-GMVERALKQRRHRPLLLID 278 (429)
T ss_pred CCCCCCCCCH-HHHHHHHHHCCCCCEEEEE
T ss_conf 4899750279-9999998734699569996
No 469
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=86.73 E-value=1.6 Score=23.95 Aligned_cols=92 Identities=21% Similarity=0.339 Sum_probs=55.5
Q ss_pred CCCHHHCCEEEECCCHHHHHHH--HHHCCCCE-EEECCHHHHHHH---HHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 5880016288856985699999--97319816-995213567788---88653101121111221001232111530130
Q gi|254780872|r 62 THPFKGLRILDLGCGGGLLSEP--MAQMGATV-TGIDPSTKNIAI---AKNHANMKNINIDYRVSCAEEIAETDEKFDII 135 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG~G~~s~~--la~~g~~V-~giD~S~~~i~~---Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V 135 (254)
...|+|++|.=||||.--++.. |...|-+| +|.- ++.|+. .-.+|.+++. .+++.+++.. .-|+|
T Consensus 32 ~~~LKgKkI~IiG~GsQG~aqaLNlRDSGldV~~~LR--~~si~~k~~Sw~~A~~~Gf----~V~t~eeai~---~ADvV 102 (489)
T PRK05225 32 ASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALR--KEAIAEKRASWRKATENGF----KVGTYEELIP---QADLV 102 (489)
T ss_pred HHHHCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEEC--CCHHHHHHHHHHHHHHCCC----CCCCHHHHHH---CCCEE
T ss_conf 6675288599980365877765244105885699955--5303341667999997799----6467899732---35878
Q ss_pred EECCCHHCCCCH--HHHHHHHHHHCCCCCEEEEE
Q ss_conf 012431026888--89988887521333215774
Q gi|254780872|r 136 LNMEVIEHVDNI--PYFIKTCCSLLLSNGLMFIS 167 (254)
Q Consensus 136 ~~~~vleHv~d~--~~~l~~~~~~LkpgG~liis 167 (254)
..+ +||. ..+.+++...+|+|..|.++
T Consensus 103 ~~L-----tPD~q~~~v~~~i~p~mk~g~~L~fa 131 (489)
T PRK05225 103 VNL-----TPDKQHSDVVRAVQPLMKQGAALGYS 131 (489)
T ss_pred EEE-----CCCCCHHHHHHHHHHHHCCCCEEEEC
T ss_conf 870-----88551489999998761267721114
No 470
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=86.62 E-value=2.2 Score=23.04 Aligned_cols=106 Identities=17% Similarity=0.150 Sum_probs=53.8
Q ss_pred HHHCCEEEECCC-HH-HHHHHHHHCCC-CEEEECCHH-------------------HHHHHHHHHHHCCCCCCC--CCCC
Q ss_conf 001628885698-56-99999973198-169952135-------------------677888865310112111--1221
Q gi|254780872|r 65 FKGLRILDLGCG-GG-LLSEPMAQMGA-TVTGIDPST-------------------KNIAIAKNHANMKNINID--YRVS 120 (254)
Q Consensus 65 l~g~~VLDiGCG-~G-~~s~~la~~g~-~V~giD~S~-------------------~~i~~Ak~~a~~~~~~i~--~~~~ 120 (254)
+...+||=+||| .| ..+..|+..|- +++-+|... .-.+.+..+.++-+..++ ....
T Consensus 17 l~~s~Vli~G~~glg~Ei~Knlvl~Gv~~i~i~D~~~v~~~dl~~qf~~~~~dvg~~ra~~~~~~l~~lNp~v~v~~~~~ 96 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTG 96 (286)
T ss_pred HHHCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 97592999998763999999999739965999959968867763472257778578889999999996489825896357
Q ss_pred CCCCCCCCCCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
Q ss_conf 0012321115301300124310268888998888752133321577436766024564
Q gi|254780872|r 121 CAEEIAETDEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFISTINRNLKAMLL 178 (254)
Q Consensus 121 ~~~~l~~~~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~ 178 (254)
..++ ..-.+||+|++.+. +...+..+....+..+.-|+.+-.+-+.+|++
T Consensus 97 ~~~~--~~~~~fdvVv~t~~------~~~~~~~iN~~cR~~~i~Fi~~~~~G~~G~~F 146 (286)
T cd01491 97 PLTT--DELLKFQVVVLTDA------SLEDQLKINEFCHSPGIKFISADTRGLFGSIF 146 (286)
T ss_pred CCCH--HHHCCCCEEEEECC------CHHHHHHHHHHHHHCCCEEEEEECCCCEEEEE
T ss_conf 7788--88538888999189------98999999888877598199950577579999
No 471
>KOG0023 consensus
Probab=86.34 E-value=1.7 Score=23.68 Aligned_cols=98 Identities=20% Similarity=0.193 Sum_probs=55.0
Q ss_pred HHCCEEEECCC-HHHHHHHHHH-CCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCHHHHEECCCH
Q ss_conf 01628885698-5699999973-1981699521356778888653101121111221--001232111530130012431
Q gi|254780872|r 66 KGLRILDLGCG-GGLLSEPMAQ-MGATVTGIDPSTKNIAIAKNHANMKNINIDYRVS--CAEEIAETDEKFDIILNMEVI 141 (254)
Q Consensus 66 ~g~~VLDiGCG-~G~~s~~la~-~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~--~~~~l~~~~~~FD~V~~~~vl 141 (254)
.|++|-=+|-| -|-++..+|+ +|.+|++||-|..--+-|- +.-+-+. |... +.+......+..|.++-. |.
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~---~~LGAd~-fv~~~~d~d~~~~~~~~~dg~~~~-v~ 255 (360)
T KOG0023 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAI---KSLGADV-FVDSTEDPDIMKAIMKTTDGGIDT-VS 255 (360)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHH---HHCCCCE-EEEECCCHHHHHHHHHHHCCCCEE-EE
T ss_conf 986898855764016899999870867999927853489999---8549621-588427878999998752675023-21
Q ss_pred HCCCCHHHHHHHHHHHCCCCCEEEE-ECCCC
Q ss_conf 0268888998888752133321577-43676
Q gi|254780872|r 142 EHVDNIPYFIKTCCSLLLSNGLMFI-STINR 171 (254)
Q Consensus 142 eHv~d~~~~l~~~~~~LkpgG~lii-st~Nr 171 (254)
. + -...+..+.++||++|.+++ ..|+.
T Consensus 256 ~-~--a~~~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023 256 N-L--AEHALEPLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred E-C--CCCCHHHHHHHHCCCCEEEEEECCCC
T ss_conf 0-2--32443888876103978999836677
No 472
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=86.32 E-value=1 Score=25.14 Aligned_cols=70 Identities=26% Similarity=0.437 Sum_probs=41.2
Q ss_pred HHHCCEEEECCC-HHH-HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEEC
Q ss_conf 001628885698-569-99999731981699521356778888653101121111221001232111530130012
Q gi|254780872|r 65 FKGLRILDLGCG-GGL-LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNM 138 (254)
Q Consensus 65 l~g~~VLDiGCG-~G~-~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~ 138 (254)
+.+++|+=+|=| +|+ .+..|.+.|+.|+..|.++.....+.. .....++.+..+.-.. +....||+|+-+
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~--~~~~~~i~~~~g~~~~--~~~~~~d~vV~S 76 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQ--PLLLEGIEVELGSHDD--EDLAEFDLVVKS 76 (448)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHH--HHHCCCCEEECCCCCH--HCCCCCCEEEEC
T ss_conf 05997999926651099999999779869998389876532344--4420372231376411--001347789989
No 473
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=86.26 E-value=0.8 Score=25.76 Aligned_cols=78 Identities=24% Similarity=0.351 Sum_probs=49.0
Q ss_pred CCCCHHHCCEEEECCCHH---HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEE
Q ss_conf 458800162888569856---99999973198169952135677888865310112111122100123211153013001
Q gi|254780872|r 61 DTHPFKGLRILDLGCGGG---LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILN 137 (254)
Q Consensus 61 ~~~~l~g~~VLDiGCG~G---~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~ 137 (254)
...+++|++|.=-|..++ .++..+.+.|++|+|+--+++-+..--........-|.+.++.-+.+...-++.|+.+.
T Consensus 174 TalSLKGKTV~VTGASG~LG~aL~k~l~~~GAKVIalTs~~~~i~~~~~~~~~~~~~i~W~~G~E~~L~~~L~kiDILIL 253 (410)
T PRK07424 174 TALSLKGKTVAVTGASGTLGQALLKELHQQGAKVIALTSNSDKIPLEINGEDLPVKTIHWQVGQEAALAELLEKVDILVI 253 (410)
T ss_pred CEEECCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCEEEE
T ss_conf 01301686799954773778999999997799899993589865534466546712786432888898888864689988
Q ss_pred C
Q ss_conf 2
Q gi|254780872|r 138 M 138 (254)
Q Consensus 138 ~ 138 (254)
.
T Consensus 254 N 254 (410)
T PRK07424 254 N 254 (410)
T ss_pred C
T ss_conf 4
No 474
>pfam05430 DUF752 Protein of unknown function (DUF752). This family contains several uncharacterized bacterial proteins with no known function.
Probab=86.18 E-value=1.7 Score=23.74 Aligned_cols=73 Identities=16% Similarity=0.014 Sum_probs=45.1
Q ss_pred CCCCCCC-CCCCCCCHHHHEECCCHHCCCCH----HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 2210012-32111530130012431026888----899888875213332157743676602456415655431046789
Q gi|254780872|r 118 RVSCAEE-IAETDEKFDIILNMEVIEHVDNI----PYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPK 192 (254)
Q Consensus 118 ~~~~~~~-l~~~~~~FD~V~~~~vleHv~d~----~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~ 192 (254)
..+++.+ ++..+..+|+++.-+.=. -.+| ..+++.++++++|||.+.--|
T Consensus 36 ~~GDa~~~l~~l~~~~DawflDgFsP-~~nPemWs~~~f~~i~~~~~~~~~l~Tys------------------------ 90 (124)
T pfam05430 36 WFGDARAALPELDFKADAWFLDGFSP-AKNPEMWTVEFFALLARRSKPGGTLATYS------------------------ 90 (124)
T ss_pred EECCHHHHHHHCCCCEEEEEECCCCC-CCCCCCCHHHHHHHHHHHHCCCCEEEEEE------------------------
T ss_conf 96409999884623010999779895-31810321999999999726898899875------------------------
Q ss_pred CCCCHHHCCCHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 98571225388999999998698388855057
Q gi|254780872|r 193 GTHQYDKFIKPTEMECFLAANKVKIIDRVGVV 224 (254)
Q Consensus 193 gtH~~~~Fi~p~el~~~l~~~g~~~~~~~g~~ 224 (254)
....+.+-|+++||++....|+.
T Consensus 91 ---------~a~~Vr~~L~~aGF~v~k~~G~g 113 (124)
T pfam05430 91 ---------SAGFVRRGLIAAGFHVGKRPGFG 113 (124)
T ss_pred ---------CCHHHHHHHHHCCCEEEECCCCC
T ss_conf ---------56899999998798899789899
No 475
>PRK07806 short chain dehydrogenase; Provisional
Probab=86.16 E-value=1.5 Score=24.08 Aligned_cols=103 Identities=12% Similarity=0.055 Sum_probs=59.5
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHH-HHHHHHHHHHHCCCCCCCCCCCCCCCCC----------CCC
Q ss_conf 8001628885698569---9999973198169952135-6778888653101121111221001232----------111
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPST-KNIAIAKNHANMKNINIDYRVSCAEEIA----------ETD 129 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~-~~i~~Ak~~a~~~~~~i~~~~~~~~~l~----------~~~ 129 (254)
.|+|+.+|=-|.+.|+ .+..|++.|++|.-.+-+. +..+......+..+.+....+.|+.+.. ..-
T Consensus 3 ~L~gKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~~~~~~~a~~~~~~i~~~g~~a~~~~~Dvtd~~~v~~l~~~~~~~~ 82 (248)
T PRK07806 3 DLPGKIALVTGSSRGIGAEVAKYLAGAGAHVVVNYRNKAARAEKVVAEIRAAGGRASAVGADLTDEASVAALMDAIRAEF 82 (248)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 98998899937885999999999998799899983895689999999999619839999789999999999999999984
Q ss_pred CCHHHHEECC-C-HHC-C-CC---------HHHHHHHHHHHCCCCCEEEE
Q ss_conf 5301300124-3-102-6-88---------88998888752133321577
Q gi|254780872|r 130 EKFDIILNME-V-IEH-V-DN---------IPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 130 ~~FD~V~~~~-v-leH-v-~d---------~~~~l~~~~~~LkpgG~lii 166 (254)
+..|+++... . .+. . +| +..+.+.+..+++.||.++.
T Consensus 83 G~iDiLVnNAg~~~~~~~~~~~~~~~n~~~~~~~~~~~~p~m~~gg~Ii~ 132 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDPDYAMRLNRDAQRRLLTLALPLMPAGSRVVF 132 (248)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99989998999987789972268999989999999999977504978999
No 476
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; InterPro: IPR005757 The tripeptide L-ananyl-gamma-D-glutamyl-meso-diaminopimelic acid is efficiently re-cycled during the formation of bacterial cell wall murein. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase is an essential enzyme in this process which links the tripeptide to UDP-N-acetylmuramate.; GO: 0016874 ligase activity, 0007047 cell wall organization and biogenesis.
Probab=86.13 E-value=1.7 Score=23.75 Aligned_cols=125 Identities=22% Similarity=0.319 Sum_probs=68.8
Q ss_pred CEEEECCCH--HHHHHHHHHCCCCEEEECCH--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCC
Q ss_conf 288856985--69999997319816995213--56778888653101121111221001232111530130012431026
Q gi|254780872|r 69 RILDLGCGG--GLLSEPMAQMGATVTGIDPS--TKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHV 144 (254)
Q Consensus 69 ~VLDiGCG~--G~~s~~la~~g~~V~giD~S--~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv 144 (254)
.||=| ||| |-++....++|++|+|.|.. |.|=.. .+..|.+| +..-|+-+| +.-+-|+|+.-++..-=
T Consensus 3 HIlGI-cGTFMGG~A~~A~~~G~~VtGsDa~vYPPMST~----LE~~GIe~-~~gfD~~QL--~~~~pD~~viGNa~~RG 74 (459)
T TIGR01081 3 HILGI-CGTFMGGLAMLAKQLGHEVTGSDANVYPPMSTL----LEAQGIEI-IEGFDAAQL--EPFKPDLVVIGNAMKRG 74 (459)
T ss_pred EEEEE-CHHHHHHHHHHHHHCCCEECCCCCCCCCCHHHH----HHHCCCEE-ECCCCHHHC--CCCCCCEEEECCCCCCC
T ss_conf 89972-513278999999874955701356558865688----87557303-227784440--03488879984633167
Q ss_pred CC-HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHC--CCC--CCCCCCHHHCCCHHHHHHHHHHCCCEEEE
Q ss_conf 88-88998888752133321577436766024564156554310--467--89985712253889999999986983888
Q gi|254780872|r 145 DN-IPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLL--QWL--PKGTHQYDKFIKPTEMECFLAANKVKIID 219 (254)
Q Consensus 145 ~d-~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il--~~~--P~gtH~~~~Fi~p~el~~~l~~~g~~~~~ 219 (254)
.+ .+.+| . .+.=++|-|. |+ .+++| +|+ =.||| -|=.|..-++=.||.+|++.-=
T Consensus 75 ~p~VE~vL-------~-~nl~Y~SGPQ-----WL-----~d~~L~drWVlaV~GTH--GKTTT~~M~~WvLE~~G~~pGF 134 (459)
T TIGR01081 75 NPCVEAVL-------E-KNLPYTSGPQ-----WL-----HDFVLRDRWVLAVAGTH--GKTTTASMLAWVLEQCGLKPGF 134 (459)
T ss_pred CHHHHHHH-------H-CCCCCCCCCC-----HH-----HHHHHHCCEEEEEECCC--CCHHHHHHHHHHHHHCCCCCCC
T ss_conf 44678987-------2-6895021751-----05-----63342134278950788--6046889999999863798872
Q ss_pred EE
Q ss_conf 55
Q gi|254780872|r 220 RV 221 (254)
Q Consensus 220 ~~ 221 (254)
+.
T Consensus 135 li 136 (459)
T TIGR01081 135 LI 136 (459)
T ss_pred EE
T ss_conf 67
No 477
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=86.04 E-value=2.3 Score=22.95 Aligned_cols=86 Identities=21% Similarity=0.210 Sum_probs=49.5
Q ss_pred CEEEECCC--HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCHHCCCC
Q ss_conf 28885698--5699999973198169952135677888865310112111122100123211153013001243102688
Q gi|254780872|r 69 RILDLGCG--GGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNMEVIEHVDN 146 (254)
Q Consensus 69 ~VLDiGCG--~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~vleHv~d 146 (254)
+|==||+| +.-++..|.+.|++|.+.|.+++..+.+.. .+.. ...++.++. +..|+|+.+ +++
T Consensus 3 ~Ig~IGlG~MG~~ma~~L~~~g~~v~v~d~~~~~~~~~~~----~g~~---~~~s~~e~~---~~~dvIi~~-----l~~ 67 (163)
T pfam03446 3 KIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVA----EGAV---AAASPAEAA---ASADVVITM-----VPA 67 (163)
T ss_pred EEEEEEEHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CCCE---ECCCHHHHH---HCCCEEEEE-----CCC
T ss_conf 8999836798999999999779969999797887799998----3995---539999998---619999992-----587
Q ss_pred HHH---HHHH---HHHHCCCCCEEE-EECC
Q ss_conf 889---9888---875213332157-7436
Q gi|254780872|r 147 IPY---FIKT---CCSLLLSNGLMF-ISTI 169 (254)
Q Consensus 147 ~~~---~l~~---~~~~LkpgG~li-ist~ 169 (254)
++. ++.. +...+++|-.++ .||.
T Consensus 68 ~~~v~~V~~~~~gl~~~~~~g~iiid~sT~ 97 (163)
T pfam03446 68 GAAVDAVIFGEDGLLPGLKPGDIIIDGSTI 97 (163)
T ss_pred HHHHHEEECCCCCHHHHCCCCCEEEECCCC
T ss_conf 145402202631332313589889867989
No 478
>PRK07791 short chain dehydrogenase; Provisional
Probab=85.95 E-value=1.4 Score=24.26 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=28.2
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECC
Q ss_conf 8001628885698569---99999731981699521
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDP 96 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~ 96 (254)
-|+|+.+|=-|.+.|+ .+..|++.|++|.-.|+
T Consensus 3 ~L~GKvalVTGas~GIG~aiA~~lA~~GA~Vvi~D~ 38 (285)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDI 38 (285)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 889987999286768999999999986999999837
No 479
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.91 E-value=1.4 Score=24.35 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=32.0
Q ss_pred CHHHCCEEEECCC--HH--H-HHHHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf 8001628885698--56--9-99999731981699521356778888
Q gi|254780872|r 64 PFKGLRILDLGCG--GG--L-LSEPMAQMGATVTGIDPSTKNIAIAK 105 (254)
Q Consensus 64 ~l~g~~VLDiGCG--~G--~-~s~~la~~g~~V~giD~S~~~i~~Ak 105 (254)
-|+||.+|=.|++ .| . .++.|++.|++|...+.+++..+.+.
T Consensus 4 ~L~gK~~lVTGaag~~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~~~ 50 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQ 50 (252)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 13998899989999877999999999986999999848879999999
No 480
>KOG1596 consensus
Probab=85.84 E-value=2.6 Score=22.61 Aligned_cols=94 Identities=23% Similarity=0.315 Sum_probs=54.0
Q ss_pred HHCCEEEECCCHHHHHHHHHHC-C--CCEEEECCHHH----HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH-HHEE
Q ss_conf 0162888569856999999731-9--81699521356----7788886531011211112210012321115301-3001
Q gi|254780872|r 66 KGLRILDLGCGGGLLSEPMAQM-G--ATVTGIDPSTK----NIAIAKNHANMKNINIDYRVSCAEEIAETDEKFD-IILN 137 (254)
Q Consensus 66 ~g~~VLDiGCG~G~~s~~la~~-g--~~V~giD~S~~----~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD-~V~~ 137 (254)
.|.+||=+|.+.|.-..+.+.. | .-|.+|+.|+. .+..|+++ .||--+ +||-.. ..+|- +|-|
T Consensus 156 pGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-----tNiiPI---iEDArh-P~KYRmlVgm 226 (317)
T KOG1596 156 PGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-----TNIIPI---IEDARH-PAKYRMLVGM 226 (317)
T ss_pred CCCEEEEEECCCCCEEEHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCC-----CCCEEE---EECCCC-CHHEEEEEEE
T ss_conf 8866999633678433300003077743999984355328899876426-----870024---504778-5003566105
Q ss_pred CCCH-HCCCCH--HH-HHHHHHHHCCCCCEEEEEC
Q ss_conf 2431-026888--89-9888875213332157743
Q gi|254780872|r 138 MEVI-EHVDNI--PY-FIKTCCSLLLSNGLMFIST 168 (254)
Q Consensus 138 ~~vl-eHv~d~--~~-~l~~~~~~LkpgG~liist 168 (254)
.+++ --|+.| .. +.-+....||+||.+++|.
T Consensus 227 VDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596 227 VDVIFADVAQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 77896268970344545334666502687189998
No 481
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=85.77 E-value=3.1 Score=22.10 Aligned_cols=39 Identities=26% Similarity=0.423 Sum_probs=29.5
Q ss_pred CCCCCHHHCCEEEECCC-HHHH-HHHHHHCCCCEEEECCHH
Q ss_conf 44588001628885698-5699-999973198169952135
Q gi|254780872|r 60 DDTHPFKGLRILDLGCG-GGLL-SEPMAQMGATVTGIDPST 98 (254)
Q Consensus 60 ~~~~~l~g~~VLDiGCG-~G~~-s~~la~~g~~V~giD~S~ 98 (254)
....+-.|++|.=||.| .|+- +..|+++|++||=.|-.+
T Consensus 130 ~~~~~~tgkkVAVIGaGPAGLsaA~~La~~G~~VtVfE~~~ 170 (560)
T PRK12771 130 PPPAPDTGKRVAVIGGGPAGLSAAYQLRRLGHAVTIFEAGP 170 (560)
T ss_pred CCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 98877789989998977899999999997698589967678
No 482
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=85.77 E-value=1.6 Score=23.95 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=41.6
Q ss_pred HHHCCEEEECCC--HHHHHHHHHHCCC-CEEEECCHH-------------------HHHHHHHHHHHCCCCCCC--CCCC
Q ss_conf 001628885698--5699999973198-169952135-------------------677888865310112111--1221
Q gi|254780872|r 65 FKGLRILDLGCG--GGLLSEPMAQMGA-TVTGIDPST-------------------KNIAIAKNHANMKNINID--YRVS 120 (254)
Q Consensus 65 l~g~~VLDiGCG--~G~~s~~la~~g~-~V~giD~S~-------------------~~i~~Ak~~a~~~~~~i~--~~~~ 120 (254)
++..+||=+||| ++..+..|++.|. +++-+|... .=.+.|+++.+.-+.+++ ....
T Consensus 19 L~~s~VlivG~GGlGs~~~~~La~~Gvg~i~lvD~D~ve~sNLnRQ~l~~~~diG~~K~~~a~~~l~~iNp~i~i~~~~~ 98 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred HHCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHEECHHHCCCCHHHHHHHHHHHHCCCCCCEEHHH
T ss_conf 86497899887788999999999839975899978745567642210237866878959999999985488753031321
Q ss_pred CC--CCCCCCCCCHHHHEE
Q ss_conf 00--123211153013001
Q gi|254780872|r 121 CA--EEIAETDEKFDIILN 137 (254)
Q Consensus 121 ~~--~~l~~~~~~FD~V~~ 137 (254)
.+ +++...-+.+|+|+.
T Consensus 99 ~i~~~~~~~~~~~~DlVid 117 (228)
T cd00757 99 RLDAENAEELIAGYDLVLD 117 (228)
T ss_pred CCCHHHHHHHHHCCCEEEE
T ss_conf 0057569988737989998
No 483
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein; InterPro: IPR014182 Members of this entry form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases. Some current members of this entry carry designations as putative alginate lyase, however none have been characterised as such..
Probab=85.73 E-value=3.1 Score=22.09 Aligned_cols=100 Identities=18% Similarity=0.198 Sum_probs=62.9
Q ss_pred CCCCCCCHHHCCEEEECCCHHHHH--HHHHHC--CCCEEEECCHHHHHHHHHHHHHCCCCC--CCCC---CCCCCCCCCC
Q ss_conf 644458800162888569856999--999731--981699521356778888653101121--1112---2100123211
Q gi|254780872|r 58 KSDDTHPFKGLRILDLGCGGGLLS--EPMAQM--GATVTGIDPSTKNIAIAKNHANMKNIN--IDYR---VSCAEEIAET 128 (254)
Q Consensus 58 ~~~~~~~l~g~~VLDiGCG~G~~s--~~la~~--g~~V~giD~S~~~i~~Ak~~a~~~~~~--i~~~---~~~~~~l~~~ 128 (254)
......+-.+..||=||.++|.-| ..|||. +..|.|.=-=++-.+..+. .|-. |+-- ..-++.|.
T Consensus 142 ~~~~~~~~~~~~lLIiGgAGGVGSI~iQLAR~LT~ltVIaTASRpEs~~Wv~~----LGAH~VIDHskPL~~ql~~L~-- 215 (338)
T TIGR02817 142 GINDPVAGAKRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLE----LGAHHVIDHSKPLKAQLEKLG-- 215 (338)
T ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHH----CCCCEEECCCCCHHHHHHHHC--
T ss_conf 58976888887478973885178999999998549649997285789999997----399188658843689999828--
Q ss_pred CCCHHHHEECCCHHCCCCHHHHHHHHHHHCCCCCEEEE-ECC
Q ss_conf 15301300124310268888998888752133321577-436
Q gi|254780872|r 129 DEKFDIILNMEVIEHVDNIPYFIKTCCSLLLSNGLMFI-STI 169 (254)
Q Consensus 129 ~~~FD~V~~~~vleHv~d~~~~l~~~~~~LkpgG~lii-st~ 169 (254)
-+.-|.|+|. ......++++.++|+|-|+|-+ .-|
T Consensus 216 l~~v~~V~Sl------T~TDqH~~~ive~laPQGrlaLIDDP 251 (338)
T TIGR02817 216 LEAVSYVFSL------THTDQHFKEIVELLAPQGRLALIDDP 251 (338)
T ss_pred CCCCCEEECC------CHHHHHHHHHHHHHCCCCCEECCCCC
T ss_conf 8998557516------60789999999985678740000287
No 484
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.42 E-value=1.4 Score=24.28 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=31.6
Q ss_pred CHHHCCEEEECCCH--HH---HHHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf 80016288856985--69---999997319816995213567788886
Q gi|254780872|r 64 PFKGLRILDLGCGG--GL---LSEPMAQMGATVTGIDPSTKNIAIAKN 106 (254)
Q Consensus 64 ~l~g~~VLDiGCG~--G~---~s~~la~~g~~V~giD~S~~~i~~Ak~ 106 (254)
.|+||++|=.|.++ |+ .++.|++.|++|.-.+-+++..+.+..
T Consensus 3 ~L~GK~alVTGaa~~~GiG~aiA~~la~~GA~V~i~~~~~~~~~~~~~ 50 (262)
T PRK07984 3 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEE 50 (262)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
T ss_conf 889987999899997259999999999879999998277789999999
No 485
>PRK07985 oxidoreductase; Provisional
Probab=85.40 E-value=1.5 Score=24.13 Aligned_cols=104 Identities=13% Similarity=0.049 Sum_probs=56.5
Q ss_pred CCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEEC--CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------C
Q ss_conf 88001628885698569---9999973198169952--1356778888653101121111221001232----------1
Q gi|254780872|r 63 HPFKGLRILDLGCGGGL---LSEPMAQMGATVTGID--PSTKNIAIAKNHANMKNINIDYRVSCAEEIA----------E 127 (254)
Q Consensus 63 ~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD--~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~----------~ 127 (254)
.-|+|+.+|=.|.+.|+ .+..|++.|++|.-.+ .++...+.+.....+.+.++....+|+.+.. .
T Consensus 45 GrL~gKvalVTGas~GIG~aiA~~lA~~GA~Vvi~~~~~~~~~a~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~lv~~~~~ 124 (294)
T PRK07985 45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 77899979991726699999999999879999994299666789999999997299589997678999999999999999
Q ss_pred CCCCHHHHEEC-CCH---HCC----------------CCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 11530130012-431---026----------------8888998888752133321577
Q gi|254780872|r 128 TDEKFDIILNM-EVI---EHV----------------DNIPYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 128 ~~~~FD~V~~~-~vl---eHv----------------~d~~~~l~~~~~~LkpgG~lii 166 (254)
.-+..|+.+.. +.. ..+ .-+-.+.+.+...|+++|.++.
T Consensus 125 ~fG~iDiLVnnAG~~~~~~~~~~~s~e~~~~~~~vNl~g~~~~~qaa~p~m~~gGsIIn 183 (294)
T PRK07985 125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIIT 183 (294)
T ss_pred HHCCCCEEEEECCCCCCCCCHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 85998889980666668888365899999999998653478888876776424877999
No 486
>KOG2078 consensus
Probab=85.32 E-value=0.36 Score=27.93 Aligned_cols=47 Identities=23% Similarity=0.330 Sum_probs=40.0
Q ss_pred HCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCC
Q ss_conf 16288856985699999973198169952135677888865310112
Q gi|254780872|r 67 GLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNI 113 (254)
Q Consensus 67 g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~ 113 (254)
|.-|-|+=||.|-++.++++.|..|++-|..++|+++.+..++.+.+
T Consensus 250 gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv 296 (495)
T KOG2078 250 GEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKV 296 (495)
T ss_pred CCHHHHHHCCCCCCCCCHHHCCCEEEECCCCHHHHHHHHHHCCCCCC
T ss_conf 41334440476743350222585899347997899999975653665
No 487
>PRK06128 oxidoreductase; Provisional
Probab=85.26 E-value=1.3 Score=24.49 Aligned_cols=106 Identities=14% Similarity=0.118 Sum_probs=57.2
Q ss_pred CCCCHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHH--HHHHHHHHHCCCCCCCCCCCCCCCCC---------
Q ss_conf 4588001628885698569---999997319816995213567--78888653101121111221001232---------
Q gi|254780872|r 61 DTHPFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKN--IAIAKNHANMKNINIDYRVSCAEEIA--------- 126 (254)
Q Consensus 61 ~~~~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~--i~~Ak~~a~~~~~~i~~~~~~~~~l~--------- 126 (254)
...-|+|+.+|=-|.+.|+ .+..|++.|++|.-.+.+.+- .+.+....+..+.......+|+.+-.
T Consensus 49 g~grL~GKvAlVTGgssGIG~AiA~~lA~eGA~Vvi~~~~~~~~~a~~~~~~i~~~G~~a~~v~~Dvsd~~~~~~~v~~~ 128 (300)
T PRK06128 49 GFGRLQGRKALITGADSGIGRATAIAFAREGADIVLNYLPEEEQDAAEVVQLIQAEGRKAVAVPGDLKDEAFCRQLVERA 128 (300)
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 88878999589917366999999999998699999942995567899999999965981899974789999999999999
Q ss_pred -CCCCCHHHHEECCC-------HHCCC--CH-----------HHHHHHHHHHCCCCCEEEE
Q ss_conf -11153013001243-------10268--88-----------8998888752133321577
Q gi|254780872|r 127 -ETDEKFDIILNMEV-------IEHVD--NI-----------PYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 127 -~~~~~FD~V~~~~v-------leHv~--d~-----------~~~l~~~~~~LkpgG~lii 166 (254)
..-+..|+++...- ++.+. +. -.+.+.+...|++||.+|.
T Consensus 129 ~~~~G~iDiLVNNAG~~~~~~~~~~~~~e~w~~~~~vNl~g~f~~~~aa~p~m~~gGsIIn 189 (300)
T PRK06128 129 VKELGGLDILVNIAGKQTARKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIIN 189 (300)
T ss_pred HHHHCCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9980999989989999778999177999999999866115899999999998753871478
No 488
>PRK12831 putative oxidoreductase; Provisional
Probab=85.22 E-value=3.3 Score=21.94 Aligned_cols=41 Identities=27% Similarity=0.394 Sum_probs=29.9
Q ss_pred CCCCCCCHHHCCEEEECCC-HHHH-HHHHHHCCCCEEEECCHH
Q ss_conf 6444588001628885698-5699-999973198169952135
Q gi|254780872|r 58 KSDDTHPFKGLRILDLGCG-GGLL-SEPMAQMGATVTGIDPST 98 (254)
Q Consensus 58 ~~~~~~~l~g~~VLDiGCG-~G~~-s~~la~~g~~V~giD~S~ 98 (254)
......+-.|++|.=||+| .|+- +..|+++|++|+-+|-.+
T Consensus 131 ~~~~~~~~~gkkVAVIGsGPAGLsaA~~La~~G~~VtVfE~~~ 173 (464)
T PRK12831 131 DLSETEEKKGKKVAVIGSGPAGLTCAGDLAKKGYDVTIFEALH 173 (464)
T ss_pred CCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 8788887899989998976899999999997699179982788
No 489
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.21 E-value=1.4 Score=24.33 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=27.9
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHH
Q ss_conf 8001628885698569---9999973198169952135
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPST 98 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~ 98 (254)
.|+|+.+|=.|.+.|+ .++.|++.|++|+..+.+.
T Consensus 3 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~i~~~~~ 40 (254)
T PRK08642 3 DISEQIVLVTGGSRGLGAAIARAFAREGARVVVNYHRS 40 (254)
T ss_pred CCCCCEEEEECHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 98989999978111999999999998799999961898
No 490
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.04 E-value=1.9 Score=23.49 Aligned_cols=42 Identities=14% Similarity=0.076 Sum_probs=31.3
Q ss_pred HHHCCEEEECCCH--H---HHHHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf 0016288856985--6---9999997319816995213567788886
Q gi|254780872|r 65 FKGLRILDLGCGG--G---LLSEPMAQMGATVTGIDPSTKNIAIAKN 106 (254)
Q Consensus 65 l~g~~VLDiGCG~--G---~~s~~la~~g~~V~giD~S~~~i~~Ak~ 106 (254)
|+|+++|=.|+++ | ..++.+++.|++|.-.+.++...+.++.
T Consensus 3 L~GK~alITGaag~~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~ 49 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNDALKKRVEP 49 (274)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
T ss_conf 89987999899998379999999999869999998488789999999
No 491
>PRK06940 short chain dehydrogenase; Provisional
Probab=84.99 E-value=3.3 Score=21.95 Aligned_cols=98 Identities=9% Similarity=0.095 Sum_probs=54.2
Q ss_pred CCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC---------CCCCHHHH
Q ss_conf 628885698569---999997319816995213567788886531011211112210012321---------11530130
Q gi|254780872|r 68 LRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAE---------TDEKFDII 135 (254)
Q Consensus 68 ~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~---------~~~~FD~V 135 (254)
++|+=+|..+|+ .+..|+ .|++|+.+|.+++.++.+.......+.++.+...|+.+... .-+..|++
T Consensus 5 ~kV~v~tGa~GIG~aiA~~la-~Ga~vvi~~~~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~l~~~~~~~G~idiL 83 (277)
T PRK06940 5 KEVVVVIGAGGMGQAIARRVG-SGKTVLLADYNEENLQAVARTLREAGFDVITQQVDVSSRESVKALAQTAATLGAVTGL 83 (277)
T ss_pred CCEEEECCCCHHHHHHHHHHH-HCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 929999781699999999998-1998999989889999999998722882999982579989999999999986998799
Q ss_pred EECCCHHCC-CCH-----------HHHHHHHHHHCCCCCEEEE
Q ss_conf 012431026-888-----------8998888752133321577
Q gi|254780872|r 136 LNMEVIEHV-DNI-----------PYFIKTCCSLLLSNGLMFI 166 (254)
Q Consensus 136 ~~~~vleHv-~d~-----------~~~l~~~~~~LkpgG~lii 166 (254)
+...-+... ..+ ...+++..+++.++|..++
T Consensus 84 VnnAG~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 126 (277)
T PRK06940 84 VHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 126 (277)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 9888678665789999988668899999999999984982899
No 492
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.94 E-value=1.7 Score=23.76 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=39.2
Q ss_pred HHCCEEEECCCHHH---HHHHHHHCCCCEEEECCH-HHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 01628885698569---999997319816995213-567788886531011211112210012
Q gi|254780872|r 66 KGLRILDLGCGGGL---LSEPMAQMGATVTGIDPS-TKNIAIAKNHANMKNINIDYRVSCAEE 124 (254)
Q Consensus 66 ~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S-~~~i~~Ak~~a~~~~~~i~~~~~~~~~ 124 (254)
+++-+|=-|.+.|+ .++.|++.|++|..+|.+ ++.++.+....+..+.++.+.++|+.+
T Consensus 4 ~~KValVTGgs~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~ 66 (259)
T PRK12745 4 TRPVALVTGGRRGIGLGIALALAAGGFDLAINDRPDAEKLAATQQELRALGVEVIFFPADVAD 66 (259)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 999999968678999999999998799899997986678999999998449948999846899
No 493
>PRK08278 short chain dehydrogenase; Provisional
Probab=84.83 E-value=1.6 Score=23.86 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=29.8
Q ss_pred CHHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHH
Q ss_conf 8001628885698569---99999731981699521356
Q gi|254780872|r 64 PFKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTK 99 (254)
Q Consensus 64 ~l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~ 99 (254)
.|+|+.+|=-|.+.|+ .+..|++.|++|..++.+.+
T Consensus 3 ~L~gKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~ 41 (273)
T PRK08278 3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAE 41 (273)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 989998999487659999999999987998999967722
No 494
>KOG2013 consensus
Probab=84.66 E-value=1.8 Score=23.61 Aligned_cols=72 Identities=33% Similarity=0.360 Sum_probs=40.3
Q ss_pred HHCCEEEECCCH-H-HHHHHHHHCCCC-EEEEC-----CHHHH--------------HHHHHHHHHCCC--CCCCCCCCC
Q ss_conf 016288856985-6-999999731981-69952-----13567--------------788886531011--211112210
Q gi|254780872|r 66 KGLRILDLGCGG-G-LLSEPMAQMGAT-VTGID-----PSTKN--------------IAIAKNHANMKN--INIDYRVSC 121 (254)
Q Consensus 66 ~g~~VLDiGCG~-G-~~s~~la~~g~~-V~giD-----~S~~~--------------i~~Ak~~a~~~~--~~i~~~~~~ 121 (254)
++.|||=||||+ | .+...|+..|+. |.-|| +|--. -.+|+.-.+.-+ .++...+++
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhan 90 (603)
T KOG2013 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHAN 90 (603)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCEECCCHHHHHEEEHHHCCCHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf 06718999057321999999998267705797325320210124550204122761889999999974977746851133
Q ss_pred CCCCCCC---CCCHHHHEE
Q ss_conf 0123211---153013001
Q gi|254780872|r 122 AEEIAET---DEKFDIILN 137 (254)
Q Consensus 122 ~~~l~~~---~~~FD~V~~ 137 (254)
+.+..+. -++||+|+.
T Consensus 91 I~e~~fnv~ff~qfdiV~N 109 (603)
T KOG2013 91 IKEPKFNVEFFRQFDIVLN 109 (603)
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 4685327899999999998
No 495
>pfam10354 DUF2431 Domain of unknown function (DUF2431). This is the N-terminal domain of a family of proteins found from plants to humans. The function is not known.
Probab=84.64 E-value=3.5 Score=21.77 Aligned_cols=121 Identities=18% Similarity=0.266 Sum_probs=65.4
Q ss_pred ECCCHHHHHHHHHHC---CCCEEE--ECCHHHHHHH---HHH---HHHCCCCCCCCCCCCCCCCCC----CCCCHHHHEE
Q ss_conf 569856999999731---981699--5213567788---886---531011211112210012321----1153013001
Q gi|254780872|r 73 LGCGGGLLSEPMAQM---GATVTG--IDPSTKNIAI---AKN---HANMKNINIDYRVSCAEEIAE----TDEKFDIILN 137 (254)
Q Consensus 73 iGCG~G~~s~~la~~---g~~V~g--iD~S~~~i~~---Ak~---~a~~~~~~i~~~~~~~~~l~~----~~~~FD~V~~ 137 (254)
||=|.=-||.+|++. +.++++ .|..+...+. |.. ..+..+..+- ...|+.++.. ...+||.|+-
T Consensus 3 VGeGdFSFS~aL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~-~gVDAt~l~~~~~~~~~~fD~IiF 81 (166)
T pfam10354 3 VGEGDFSFSLSLATAFGSPTNLTATSLDSREELEEKYGDAEENLEELEELGVTVL-HGVDATKLKKHFSLKKNRFDRIIF 81 (166)
T ss_pred EECCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHCCCHHHHHHHHHHCCCEEE-EEEECCCCCCCCCCCCCCCCEEEE
T ss_conf 6664328999999962999838997458999998767559999999985899599-857445366684434783578998
Q ss_pred CCCHHCCC---------------CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCC
Q ss_conf 24310268---------------888998888752133321577436766024564156554310467899857122538
Q gi|254780872|r 138 MEVIEHVD---------------NIPYFIKTCCSLLLSNGLMFISTINRNLKAMLLAIIGAEYLLQWLPKGTHQYDKFIK 202 (254)
Q Consensus 138 ~~vleHv~---------------d~~~~l~~~~~~LkpgG~liist~Nr~~~s~~~~i~~ae~il~~~P~gtH~~~~Fi~ 202 (254)
. +.|+. =...+++.+.++|+|+|.+.++--+.. |. -.|
T Consensus 82 N--FPH~G~~~~~~~~~i~~nr~Ll~~Ff~sa~~~l~~~G~i~vTl~~g~------------------py--~~W----- 134 (166)
T pfam10354 82 N--FPHAGGKIKDSDRNIRLNRELLRGFFKNASELLKPGGEIHVTLKDGE------------------PY--NSW----- 134 (166)
T ss_pred C--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC------------------CC--CEE-----
T ss_conf 7--99888877412555899999999999999998279989999953899------------------98--730-----
Q ss_pred HHHHHHHHHHCCCEEEEEEEE
Q ss_conf 899999999869838885505
Q gi|254780872|r 203 PTEMECFLAANKVKIIDRVGV 223 (254)
Q Consensus 203 p~el~~~l~~~g~~~~~~~g~ 223 (254)
.+..+.+++||..+....+
T Consensus 135 --~i~~lA~~~gl~l~~~~~F 153 (166)
T pfam10354 135 --NIEALAAEAGLKLEESVKF 153 (166)
T ss_pred --CHHHHHHHCCCEEEEEECC
T ss_conf --3889997479589887557
No 496
>PRK06182 short chain dehydrogenase; Validated
Probab=84.53 E-value=1.1 Score=24.83 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=32.2
Q ss_pred HHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHH
Q ss_conf 001628885698569---9999973198169952135677888
Q gi|254780872|r 65 FKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIA 104 (254)
Q Consensus 65 l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~A 104 (254)
++++.+|=-||++|+ ++..|++.|++|.+++-+.+.++..
T Consensus 1 mk~Kv~lITGassGIG~a~a~~la~~G~~V~~~~r~~~~l~~l 43 (273)
T PRK06182 1 MKKKVALVTGASSGIGKATARKLIAEGFTVYGAARRVDKMEDL 43 (273)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf 9469899906320999999999998799899997989999999
No 497
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.43 E-value=1.9 Score=23.37 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=11.2
Q ss_pred CEEEECCC-HHH-HHHHHHHCCCCEEEECC
Q ss_conf 28885698-569-99999731981699521
Q gi|254780872|r 69 RILDLGCG-GGL-LSEPMAQMGATVTGIDP 96 (254)
Q Consensus 69 ~VLDiGCG-~G~-~s~~la~~g~~V~giD~ 96 (254)
.+|=+|-| +|+ .+..|.+.|++|++.|.
T Consensus 9 ~~LV~G~G~sG~s~a~~L~~~G~~V~~~D~ 38 (448)
T PRK03803 9 LRIVVGLGKSGMSLVRFLARQGYQFAVTDT 38 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 589999899999999999978895999918
No 498
>PRK13243 glyoxylate reductase; Reviewed
Probab=84.06 E-value=3.7 Score=21.62 Aligned_cols=91 Identities=13% Similarity=0.179 Sum_probs=53.6
Q ss_pred CCCHHHCCEEEECCC-HH-HHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEECC
Q ss_conf 588001628885698-56-9999997319816995213567788886531011211112210012321115301300124
Q gi|254780872|r 62 THPFKGLRILDLGCG-GG-LLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIAETDEKFDIILNME 139 (254)
Q Consensus 62 ~~~l~g~~VLDiGCG-~G-~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~~~~~~FD~V~~~~ 139 (254)
...+.|+++.=||+| -| .++..+...|.+|.+.|++..- +.+ .. ..+.+ .+.+++. ..-|+|+..-
T Consensus 145 g~eL~gktlGIiG~G~IG~~vak~~~~fgm~V~~~d~~~~~-~~~----~~--~~~~~--~~l~ell---~~sDiIslh~ 212 (333)
T PRK13243 145 GYDVYGKTIGIVGFGRIGQAIARRAKGFGMRILYYSRTRKP-EVE----KE--LGAEY--RPLEDLL---RESDFVVLAV 212 (333)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCH-HHH----HH--CCCEE--ECHHHHH---HHCCEEEECC
T ss_conf 64667889999792566899999999769999998998986-678----76--09688--1199974---2165266425
Q ss_pred CHHCCCCHHHHH-HHHHHHCCCCCEEEE
Q ss_conf 310268888998-888752133321577
Q gi|254780872|r 140 VIEHVDNIPYFI-KTCCSLLLSNGLMFI 166 (254)
Q Consensus 140 vleHv~d~~~~l-~~~~~~LkpgG~lii 166 (254)
-+ .++...++ ++..+.+|||.+|+=
T Consensus 213 Pl--t~eT~~li~~~~~~~MK~~a~lIN 238 (333)
T PRK13243 213 PL--TKETYHMINEERLKLMKKTAILVN 238 (333)
T ss_pred CC--CCCCCCCCCHHHHHHCCCCEEEEE
T ss_conf 58--601346136999971799819998
No 499
>PRK06484 short chain dehydrogenase; Validated
Probab=83.93 E-value=1.6 Score=23.84 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=34.0
Q ss_pred HHHCCEEEECCCHHH---HHHHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf 001628885698569---99999731981699521356778888
Q gi|254780872|r 65 FKGLRILDLGCGGGL---LSEPMAQMGATVTGIDPSTKNIAIAK 105 (254)
Q Consensus 65 l~g~~VLDiGCG~G~---~s~~la~~g~~V~giD~S~~~i~~Ak 105 (254)
++|+.+|=-|.+.|+ .+..|++.|++|.-.|.+.+..+...
T Consensus 272 ~kGKvalVTGaa~GIG~aiA~~la~~GA~Vvi~d~~~~~~~~~~ 315 (530)
T PRK06484 272 RAGRVVCVTGGASGIGAAIADRFAALGDRVAIIDSDGEEAVKLR 315 (530)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 78989999287678999999999988798999958889999999
No 500
>pfam11599 AviRa RRNA methyltransferase AviRa. This family of proteins represents the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA.
Probab=83.85 E-value=2.3 Score=22.90 Aligned_cols=61 Identities=21% Similarity=0.395 Sum_probs=0.0
Q ss_pred HHHHHH-HHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCC----CCEEEECCHHHHHHHHHHHH
Q ss_conf 565999-999988651876444588001628885698569999997319----81699521356778888653
Q gi|254780872|r 41 PVRIKY-IQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMG----ATVTGIDPSTKNIAIAKNHA 108 (254)
Q Consensus 41 ~~R~~~-I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g----~~V~giD~S~~~i~~Ak~~a 108 (254)
|+|+.- |.+.-.......... ++.|--||+|++.-.+.-+. ..|.|-|+++..|+.|+.+.
T Consensus 32 PVRLAsEifqRal~~~~g~~p~-------tlwDpCCG~gYlLTvlgLLhr~~i~~v~aSDVd~~al~LA~~NL 97 (249)
T pfam11599 32 PVRLALEIFERALARLIGDAEI-------SLWDCCCGGAYLLSILGLLHRNSIANLIASDIDPAPIELAADNL 97 (249)
T ss_pred CHHHHHHHHHHHHHHCCCCCCC-------CEEECCCCCHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 1899999999999862688873-------03305777118999999853157877774258878999998645
Done!