HHsearch alignment for GI: 254780872 and conserved domain: pfam00398

>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=97.90  E-value=5.1e-05  Score=51.81  Aligned_cols=74  Identities=15%  Similarity=0.195  Sum_probs=54.6

Q ss_pred             HHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             99998865187644458800162888569856999999731981699521356778888653101121111221001232
Q gi|254780872|r   47 IQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA  126 (254)
Q Consensus        47 I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~  126 (254)
T Consensus        18 i~~kIv~~~~~-------~~~d~VlEIGPG~G~LT~~L~~~~~~v~aiE~D~~l~~~L~~~~~-~~~~~~ii~~D~l~~d   89 (258)
T pfam00398        18 VINRIVDKANL-------QESDTVLEIGPGKGALTEELAKRAKQVVAIEIDPRLAKRLQKKLA-LHPNVEVVHQDFLKFS   89 (258)
T ss_pred             HHHHHHHHCCC-------CCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHC-CCCCEEEEECCHHCCC
T ss_conf             99999997089-------999979997996239999999616947999544779999998644-2897799966301057


Q ss_pred             CC
Q ss_conf             11
Q gi|254780872|r  127 ET  128 (254)
Q Consensus       127 ~~  128 (254)
T Consensus        90 ~~   91 (258)
T pfam00398        90 FP   91 (258)
T ss_pred             CC
T ss_conf             54