HHsearch alignment for GI: 254780872 and conserved domain: pfam00398
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=97.90 E-value=5.1e-05 Score=51.81 Aligned_cols=74 Identities=15% Similarity=0.195 Sum_probs=54.6
Q ss_pred HHHHHHHHCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99998865187644458800162888569856999999731981699521356778888653101121111221001232
Q gi|254780872|r 47 IQDKIMQHFQCKSDDTHPFKGLRILDLGCGGGLLSEPMAQMGATVTGIDPSTKNIAIAKNHANMKNINIDYRVSCAEEIA 126 (254)
Q Consensus 47 I~~~i~~~~~~~~~~~~~l~g~~VLDiGCG~G~~s~~la~~g~~V~giD~S~~~i~~Ak~~a~~~~~~i~~~~~~~~~l~ 126 (254)
T Consensus 18 i~~kIv~~~~~-------~~~d~VlEIGPG~G~LT~~L~~~~~~v~aiE~D~~l~~~L~~~~~-~~~~~~ii~~D~l~~d 89 (258)
T pfam00398 18 VINRIVDKANL-------QESDTVLEIGPGKGALTEELAKRAKQVVAIEIDPRLAKRLQKKLA-LHPNVEVVHQDFLKFS 89 (258)
T ss_pred HHHHHHHHCCC-------CCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHC-CCCCEEEEECCHHCCC
T ss_conf 99999997089-------999979997996239999999616947999544779999998644-2897799966301057
Q ss_pred CC
Q ss_conf 11
Q gi|254780872|r 127 ET 128 (254)
Q Consensus 127 ~~ 128 (254)
T Consensus 90 ~~ 91 (258)
T pfam00398 90 FP 91 (258)
T ss_pred CC
T ss_conf 54